Experiment set1IT067 for Rahnella sp. WP5

Compare to:

Ammonium chloride nitrogen source; RCH2 media; shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS03695 -6.9 -4.8 3-isopropylmalate dehydratase small subunit compare
EX31_RS20980 -5.9 -7.0 glutamate 5-kinase compare
EX31_RS12510 -5.9 -18.8 FAD-dependent oxidoreductase compare
EX31_RS22625 -5.8 -4.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS15005 -5.8 -17.0 dihydroxy-acid dehydratase compare
EX31_RS13445 -5.7 -14.6 argininosuccinate synthase compare
EX31_RS15020 -5.6 -18.8 ketol-acid reductoisomerase compare
EX31_RS02520 -5.6 -3.9 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS03685 -5.6 -13.5 3-isopropylmalate dehydrogenase compare
EX31_RS03250 -5.5 -9.9 RNA polymerase-binding protein DksA compare
EX31_RS23415 -5.4 -7.4 citrate synthase compare
EX31_RS11735 -5.4 -7.4 homoserine O-succinyltransferase compare
EX31_RS05785 -5.4 -3.7 superoxide dismutase [Mn] compare
EX31_RS12515 -5.4 -28.6 glutamate synthase large subunit compare
EX31_RS16860 -5.4 -19.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS02690 -5.4 -6.4 pyrroline-5-carboxylate reductase compare
EX31_RS14215 -5.3 -21.9 cystathionine gamma-synthase compare
EX31_RS22620 -5.3 -3.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS14190 -5.3 -14.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS14180 -5.3 -17.5 argininosuccinate lyase compare
EX31_RS11460 -5.2 -3.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS20975 -5.2 -7.1 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS13160 -5.2 -13.8 amino-acid N-acetyltransferase compare
EX31_RS03830 -5.2 -19.3 carbamoyl-phosphate synthase large subunit compare
EX31_RS12400 -5.1 -7.9 RNA polymerase factor sigma-54 compare
EX31_RS18530 -5.1 -15.4 leucine-responsive transcriptional regulator Lrp compare
EX31_RS16855 -5.1 -16.5 phosphoribosylamine--glycine ligase compare
EX31_RS04035 -5.0 -15.8 phosphoserine phosphatase compare
EX31_RS03690 -5.0 -13.0 3-isopropylmalate dehydratase large subunit compare
EX31_RS02515 -5.0 -4.9 PAS domain-containing protein compare
EX31_RS20495 -5.0 -10.7 outer membrane protein assembly factor BamB compare
EX31_RS22695 -5.0 -10.1 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS23245 -5.0 -21.2 asparagine synthase B compare
EX31_RS14185 -4.9 -10.0 acetylglutamate kinase compare
EX31_RS14200 -4.9 -19.4 phosphoenolpyruvate carboxylase compare
EX31_RS03940 -4.9 -13.0 homoserine kinase compare
EX31_RS03935 -4.9 -13.0 threonine synthase compare
EX31_RS09980 -4.9 -6.6 tryptophan synthase subunit alpha compare
EX31_RS03945 -4.9 -26.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS09955 -4.8 -5.7 anthranilate synthase component 1 compare
EX31_RS21470 -4.8 -11.9 phosphoglycerate dehydrogenase compare
EX31_RS14205 -4.7 -14.9 methylenetetrahydrofolate reductase compare
EX31_RS11470 -4.7 -4.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS03835 -4.7 -10.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS13275 -4.7 -15.0 diaminopimelate decarboxylase compare
EX31_RS21895 -4.7 -21.2 phosphoribosylformylglycinamidine synthase compare
EX31_RS09975 -4.7 -7.8 tryptophan synthase subunit beta compare
EX31_RS20450 -4.7 -5.5 IMP dehydrogenase compare
EX31_RS11465 -4.6 -7.1 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS15880 -4.6 -11.1 nitrogen regulation protein NR(I) compare
EX31_RS11440 -4.6 -8.2 histidinol dehydrogenase compare
EX31_RS18540 -4.5 -3.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS09965 -4.5 -8.0 anthranilate phosphoribosyltransferase compare
EX31_RS02530 -4.5 -5.9 ABC transporter ATP-binding protein compare
EX31_RS19570 -4.5 -16.4 amidophosphoribosyltransferase compare
EX31_RS22750 -4.4 -6.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS11445 -4.3 -9.1 histidinol-phosphate transaminase compare
EX31_RS09970 -4.2 -8.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS15875 -4.1 -16.9 nitrogen regulation protein NR(II) compare
EX31_RS22245 -4.1 -4.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS07895 -4.1 -12.6 phosphoadenylyl-sulfate reductase compare
EX31_RS20175 -4.1 -11.4 cysteine synthase A compare
EX31_RS12825 -4.0 -10.7 ornithine carbamoyltransferase compare
EX31_RS24385 -4.0 -4.8 dihydroorotase compare
EX31_RS11450 -4.0 -7.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS07585 -4.0 -11.5 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS18255 -4.0 -2.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS09855 -4.0 -5.4 orotidine-5'-phosphate decarboxylase compare
EX31_RS11455 -3.9 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS23440 -3.9 -2.7 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS03680 -3.9 -13.8 2-isopropylmalate synthase compare
EX31_RS09890 -3.9 -14.5 HTH-type transcriptional regulator CysB compare
EX31_RS07870 -3.8 -11.9 adenylyl-sulfate kinase compare
EX31_RS14310 -3.8 -5.1 6-phosphofructokinase compare
EX31_RS03775 -3.7 -6.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS15870 -3.6 -3.5 glutamate--ammonia ligase compare
EX31_RS09960 -3.5 -7.0 glutamine amidotransferase compare
EX31_RS07590 -3.5 -2.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS19610 -3.4 -9.5 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS14340 -3.3 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS14335 -3.2 -2.2 serine O-acetyltransferase compare
EX31_RS10030 -3.1 -3.7 YciY family protein compare
EX31_RS08720 -3.1 -15.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS14500 -3.1 -10.0 orotate phosphoribosyltransferase compare
EX31_RS07900 -3.1 -17.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS18525 -3.0 -5.4 DNA translocase FtsK compare
EX31_RS18095 -3.0 -8.6 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS25370 -3.0 -11.3 HTH-type transcriptional regulator MetR compare
EX31_RS12785 -3.0 -11.2 aspartate carbamoyltransferase compare
EX31_RS23495 -2.9 -10.1 Tol-Pal system protein TolB compare
EX31_RS23500 -2.8 -6.0 peptidoglycan-associated lipoprotein Pal compare
EX31_RS21850 -2.8 -3.3 pyridoxine 5'-phosphate synthase compare
EX31_RS15010 -2.7 -11.1 threonine ammonia-lyase, biosynthetic compare
EX31_RS20735 -2.7 -6.3 exodeoxyribonuclease V subunit beta compare
EX31_RS20190 -2.7 -2.5 PTS glucose transporter subunit IIA compare
EX31_RS07955 -2.7 -16.8 GTP diphosphokinase compare
EX31_RS22430 -2.7 -3.1 hemolysin expression modulator Hha compare
EX31_RS03480 -2.6 -3.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS04630 -2.6 -13.0 aspartate aminotransferase family protein compare
EX31_RS07905 -2.6 -14.9 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS07880 -2.5 -14.9 sulfate adenylyltransferase subunit CysD compare
EX31_RS23490 -2.5 -4.1 cell envelope integrity protein TolA compare
EX31_RS06055 -2.5 -4.6 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS22250 -2.4 -6.9 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS04390 -2.4 -2.2 DNA polymerase III subunit chi compare
EX31_RS23485 -2.4 -3.2 colicin uptake protein TolR compare
EX31_RS08130 -2.4 -2.8 accessory factor UbiK family protein compare
EX31_RS14620 -2.4 -3.2 SCP2 domain-containing protein compare
EX31_RS12875 -2.3 -3.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS07875 -2.3 -14.4 sulfate adenylyltransferase subunit CysN compare
EX31_RS08535 -2.2 -2.9 30S ribosome-binding factor RbfA compare
EX31_RS04725 -2.2 -4.7 shikimate kinase AroK compare
EX31_RS04325 -2.1 -1.4 hypothetical protein compare
EX31_RS03035 -2.1 -7.9 LysE family transporter compare
EX31_RS07380 -2.1 -2.8 redox-regulated ATPase YchF compare
EX31_RS05730 -2.1 -3.0 isochorismatase family protein compare
EX31_RS07560 -2.0 -15.2 ATP-dependent chaperone ClpB compare
EX31_RS10020 -1.9 -1.8 YciI family protein compare
EX31_RS09895 -1.9 -3.5 type I DNA topoisomerase compare
EX31_RS06060 -1.9 -5.5 phosphate ABC transporter permease PstA compare
EX31_RS25105 -1.8 -1.5 DUF2474 domain-containing protein compare
EX31_RS11815 -1.8 -8.1 glucose-6-phosphate isomerase compare
EX31_RS03400 -1.8 -5.5 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS07595 -1.8 -8.0 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS25365 -1.8 -1.5 50S ribosomal protein L31 compare
EX31_RS19600 -1.7 -7.9 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS13815 -1.7 -1.2 ribonuclease T compare
EX31_RS06070 -1.6 -6.5 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS10115 -1.6 -8.3 formyltetrahydrofolate deformylase compare
EX31_RS21400 -1.6 -6.0 transketolase compare
EX31_RS11690 -1.6 -1.9 dihydroneopterin triphosphate diphosphatase compare
EX31_RS06065 -1.6 -7.5 phosphate ABC transporter permease PstC compare
EX31_RS06140 -1.6 -9.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS13045 -1.6 -9.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS06150 -1.6 -10.4 transcriptional regulator AsnC compare
EX31_RS13870 -1.6 -1.5 pyruvate kinase PykF compare
EX31_RS07610 -1.6 -2.5 conjugal transfer protein TraR compare
EX31_RS07785 -1.6 -1.5 carbon storage regulator CsrA compare
EX31_RS03790 -1.6 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS06225 -1.5 -2.2 hypothetical protein compare
EX31_RS03030 -1.5 -8.3 helix-turn-helix transcriptional regulator compare
EX31_RS11675 -1.5 -2.6 Holliday junction branch migration protein RuvA compare
EX31_RS19205 -1.5 -2.1 50S ribosomal protein L25 compare
EX31_RS03710 -1.4 -1.7 glucose uptake inhibitor SgrT compare
EX31_RS25340 -1.4 -4.6 hypothetical protein compare
EX31_RS19655 -1.4 -5.1 beta-ketoacyl-ACP synthase I compare
EX31_RS06000 -1.4 -4.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS04925 -1.4 -3.4 Fe-S biogenesis protein NfuA compare
EX31_RS15155 -1.4 -2.6 diaminopimelate epimerase compare
EX31_RS22740 -1.4 -7.1 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS08745 -1.3 -1.5 50S ribosomal protein L9 compare
EX31_RS09520 -1.3 -2.6 hypothetical protein compare
EX31_RS16685 -1.3 -2.5 3-hydroxyacyl-CoA dehydrogenase family protein compare
EX31_RS15540 -1.2 -1.5 SDR family oxidoreductase compare
EX31_RS21190 -1.2 -3.2 ribonuclease HI compare
EX31_RS23125 -1.2 -2.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS22690 -1.2 -7.1 phosphoribosylglycinamide formyltransferase compare
EX31_RS15000 -1.2 -7.5 branched-chain amino acid transaminase compare
EX31_RS17290 -1.2 -3.8 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS25910 -1.2 -1.5 hypothetical protein compare
EX31_RS03040 -1.2 -6.4 hypothetical protein compare
EX31_RS01700 -1.2 -2.6 chromosome partitioning protein ParB compare
EX31_RS03890 -1.2 -3.2 Na+/H+ antiporter NhaA compare
EX31_RS19480 -1.2 -5.3 acetate kinase compare
EX31_RS20180 -1.2 -2.9 phosphocarrier protein Hpr compare
EX31_RS08150 -1.2 -7.6 inorganic triphosphatase compare
EX31_RS11435 -1.2 -3.6 ATP phosphoribosyltransferase compare
EX31_RS02385 -1.1 -1.5 hypothetical protein compare
EX31_RS19435 -1.1 -2.0 NADH-quinone oxidoreductase subunit A compare
EX31_RS13480 -1.1 -3.9 site-specific tyrosine recombinase XerD compare
EX31_RS25375 -1.1 -2.2 ilv operon leader peptide compare
EX31_RS21805 -1.1 -1.7 anti-sigma-E factor RseA compare
EX31_RS06620 -1.0 -2.8 electron transport complex subunit RsxA compare
EX31_RS24395 -1.0 -3.6 ribonuclease E compare
EX31_RS20210 -1.0 -5.1 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
EX31_RS20215 -1.0 -6.6 sulfate/thiosulfate ABC transporter permease CysW compare
EX31_RS13875 -1.0 -4.9 major outer membrane lipoprotein compare
EX31_RS09585 -1.0 -1.5 flagellar biosynthetic protein FliO compare
EX31_RS23525 -1.0 -4.1 quinolinate synthase NadA compare
EX31_RS24375 -1.0 -2.3 biofilm formation regulator BssS compare
EX31_RS18535 -1.0 -3.6 thioredoxin-disulfide reductase compare
EX31_RS18570 -1.0 -1.5 cold shock-like protein CspD compare
EX31_RS20840 -1.0 -2.0 hypothetical protein compare
EX31_RS24505 -1.0 -3.4 alpha/beta hydrolase compare
EX31_RS09325 -1.0 -1.6 transporter compare
EX31_RS16845 -1.0 -2.9 DNA-binding protein HU-alpha compare
EX31_RS12175 -1.0 -3.0 DNA-binding transcriptional regulator Fis compare
EX31_RS06485 -0.9 -1.4 YdbL family protein compare
EX31_RS11150 -0.9 -2.1 efflux transporter periplasmic adaptor subunit compare
EX31_RS12460 -0.9 -4.7 BolA family transcriptional regulator compare
EX31_RS09460 -0.9 -4.1 flagellar filament capping protein FliD compare
EX31_RS07555 -0.9 -1.8 glucose 1-dehydrogenase compare
EX31_RS26000 -0.9 -1.2 GntR family transcriptional regulator compare
EX31_RS00920 -0.9 -1.4 DUF1493 family protein compare
EX31_RS03920 -0.9 -4.7 transaldolase compare
EX31_RS00985 -0.9 -1.7 type VI secretion protein compare
EX31_RS11110 -0.9 -1.6 RidA family protein compare
EX31_RS09790 -0.9 -2.1 autoinducer 2 ABC transporter permease LsrD compare
EX31_RS24420 -0.9 -4.6 phosphate acyltransferase PlsX compare
EX31_RS04645 -0.9 -0.8 DUF2559 family protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms