Experiment set1IT067 for Pantoea sp. MT58

Compare to:

Cobalt chloride hexahydrate 10 uM, aerobic

200 most important genes:

  gene name fitness t score description  
IAI47_01030 -6.0 -17.7 branched-chain amino acid transaminase compare
IAI47_07060 -5.8 -13.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_16210 -5.8 -15.0 homoserine kinase compare
IAI47_09175 -5.8 -8.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_06235 -5.7 -8.8 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_16015 -5.7 -7.8 3-isopropylmalate dehydratase small subunit compare
IAI47_17220 -5.7 -30.4 glutamate synthase large subunit compare
IAI47_07085 -5.6 -16.5 histidinol-phosphate transaminase compare
IAI47_03860 -5.6 -13.9 diaminopimelate decarboxylase compare
IAI47_17225 -5.6 -23.2 sulfite reductase subunit alpha compare
IAI47_16005 -5.5 -12.9 3-isopropylmalate dehydrogenase compare
IAI47_01050 -5.5 -19.6 ketol-acid reductoisomerase compare
IAI47_09180 -5.5 -11.2 anthranilate phosphoribosyltransferase compare
IAI47_16205 -5.5 -11.2 threonine synthase compare
IAI47_07070 -5.5 -9.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_01040 -5.5 -14.6 threonine ammonia-lyase, biosynthetic compare
IAI47_00910 -5.4 -13.2 acetylglutamate kinase compare
IAI47_15635 -5.4 -4.2 RNA polymerase-binding protein DksA compare
IAI47_07065 -5.4 -13.9 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_01035 -5.3 -23.2 dihydroxy-acid dehydratase compare
IAI47_09190 -5.3 -13.6 anthranilate synthase component 1 compare
IAI47_16215 -5.3 -22.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_18015 -5.3 -19.1 homoserine O-succinyltransferase compare
IAI47_07090 -5.2 -14.3 histidinol dehydrogenase compare
IAI47_16010 -5.2 -20.1 3-isopropylmalate dehydratase large subunit compare
IAI47_09010 -5.2 -11.6 formyltetrahydrofolate deformylase compare
IAI47_00895 -5.2 -24.1 phosphoenolpyruvate carboxylase compare
IAI47_16000 -5.1 -24.9 2-isopropylmalate synthase compare
IAI47_09185 -5.0 -7.6 glutamine amidotransferase compare
IAI47_09165 -5.0 -9.0 tryptophan synthase subunit alpha compare
IAI47_13900 -4.9 -21.0 asparagine synthase B compare
IAI47_13770 -4.9 -11.0 citrate synthase compare
IAI47_16350 -4.9 -13.8 phosphoserine phosphatase compare
IAI47_03725 -4.9 -14.1 phosphoglycerate dehydrogenase compare
IAI47_16115 -4.8 -26.2 carbamoyl-phosphate synthase large subunit compare
IAI47_12865 -4.8 -11.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_18040 -4.8 -23.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_09170 -4.8 -13.0 tryptophan synthase subunit beta compare
IAI47_16830 -4.7 -20.0 ornithine carbamoyltransferase compare
IAI47_07075 -4.7 -12.8 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_07080 -4.7 -14.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_15115 -4.6 -10.7 glutamate-5-semialdehyde dehydrogenase compare
IAI47_00905 -4.6 -15.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_12790 -4.5 -1.8 chromosome partition protein MukE compare
IAI47_00920 -4.5 -20.0 argininosuccinate lyase compare
IAI47_03975 -4.5 -18.4 amino-acid N-acetyltransferase compare
IAI47_00880 -4.5 -20.1 cystathionine gamma-synthase compare
IAI47_00915 -4.5 -18.6 argininosuccinate synthase compare
IAI47_00900 -4.4 -16.6 acetylornithine deacetylase compare
IAI47_10520 -4.4 -5.2 pyridoxamine 5'-phosphate oxidase compare
IAI47_12215 -4.4 -17.9 dihydroorotase compare
IAI47_00780 -4.3 -5.9 6-phosphofructokinase compare
IAI47_06275 -4.3 -21.1 amidophosphoribosyltransferase compare
IAI47_05180 -4.3 -17.8 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_00455 -4.3 -15.2 nitrogen regulation protein NR(II) compare
IAI47_07095 -4.2 -11.3 ATP phosphoribosyltransferase compare
IAI47_12705 -4.2 -16.1 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_15120 -4.2 -8.5 glutamate 5-kinase compare
IAI47_16080 -4.2 -13.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_13740 -4.2 -2.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_00760 -4.1 -6.2 envelope stress response regulator transcription factor CpxR compare
IAI47_15605 -4.1 -3.5 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_05420 -4.1 -2.7 PTS glucose transporter subunit IIA compare
IAI47_04895 -4.1 -6.3 pyridoxine 5'-phosphate synthase compare
IAI47_16120 -4.0 -11.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_15485 -4.0 -2.6 molecular chaperone Skp compare
IAI47_04930 -4.0 -23.0 phosphoribosylformylglycinamidine synthase compare
IAI47_15810 -4.0 -3.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_13180 -3.9 -11.0 manganese-binding transcriptional regulator MntR compare
IAI47_13695 -3.9 -1.5 colicin uptake protein TolR compare
IAI47_14945 -3.9 -4.6 pyrroline-5-carboxylate reductase compare
IAI47_17185 -3.8 -6.3 RNA polymerase factor sigma-54 compare
IAI47_09275 -3.8 -11.0 orotidine-5'-phosphate decarboxylase compare
IAI47_00450 -3.7 -14.9 nitrogen regulation protein NR(I) compare
IAI47_14355 -3.7 -13.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_00600 -3.6 -12.0 orotate phosphoribosyltransferase compare
IAI47_18045 -3.6 -12.8 phosphoribosylamine--glycine ligase compare
IAI47_12915 -3.6 -14.1 leucine-responsive transcriptional regulator Lrp compare
IAI47_04410 -3.6 -14.6 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_03855 -3.6 -8.3 LysR family transcriptional regulator compare
IAI47_05275 -3.6 -7.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_08085 -3.5 -8.2 helix-turn-helix domain-containing protein compare
IAI47_02695 -3.5 -13.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_09240 -3.4 -2.4 HTH-type transcriptional regulator CysB compare
IAI47_18315 -3.4 -7.8 HTH-type transcriptional regulator MetR compare
IAI47_04160 -3.3 -13.0 phosphoadenylyl-sulfate reductase compare
IAI47_04190 -3.2 -8.4 adenylyl-sulfate kinase compare
IAI47_16870 -3.2 -7.8 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_16860 -3.2 -14.2 aspartate carbamoyltransferase compare
IAI47_07165 -3.1 -3.5 exodeoxyribonuclease I compare
IAI47_14350 -3.1 -7.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_04155 -3.1 -14.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_18530 -3.1 -3.3 thioredoxin TrxA compare
IAI47_13685 -3.1 -2.9 Tol-Pal system protein TolB compare
IAI47_18240 -3.0 -4.1 NAD(P)H-flavin reductase compare
IAI47_13745 -2.9 -5.4 2-oxoglutarate dehydrogenase E1 component compare
IAI47_04150 -2.9 -13.0 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_09235 -2.8 -2.3 type I DNA topoisomerase compare
IAI47_09040 -2.7 -2.1 NAD-dependent epimerase compare
IAI47_04180 -2.7 -12.6 sulfate adenylyltransferase subunit CysD compare
IAI47_00460 -2.7 -1.9 glutamate--ammonia ligase compare
IAI47_16220 -2.7 -5.8 thr operon leader peptide compare
IAI47_12645 -2.6 -5.4 porin OmpA compare
IAI47_13690 -2.5 -1.4 cell envelope integrity protein TolA compare
IAI47_17965 -2.5 -12.4 glucose-6-phosphate isomerase compare
IAI47_04175 -2.5 -10.7 uroporphyrinogen-III C-methyltransferase compare
IAI47_04120 -2.4 -15.0 GTP diphosphokinase compare
IAI47_17020 -2.3 -4.2 30S ribosome-binding factor RbfA compare
IAI47_05440 -2.3 -9.5 cysteine synthase A compare
IAI47_12060 -2.2 -5.3 beta-ketoacyl-ACP synthase II compare
IAI47_00655 -2.2 -5.0 glycosyltransferase family 4 protein compare
IAI47_01955 -2.2 -10.8 aspartate aminotransferase family protein compare
IAI47_05070 -2.1 -1.2 outer membrane protein assembly factor BamB compare
IAI47_04185 -2.1 -11.8 sulfate adenylyltransferase subunit CysN compare
IAI47_03375 -2.1 -9.8 peptide chain release factor 3 compare
IAI47_13050 -2.1 -6.3 YbjN domain-containing protein compare
IAI47_17215 -1.9 -1.1 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_15540 -1.9 -9.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_01045 -1.8 -5.7 HTH-type transcriptional activator IlvY compare
IAI47_09580 -1.8 -6.0 FNR family transcription factor compare
IAI47_17005 -1.8 -7.8 polyribonucleotide nucleotidyltransferase compare
IAI47_16085 -1.8 -2.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_02585 -1.7 -3.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_04870 -1.7 -6.0 elongation factor 4 compare
IAI47_10925 -1.6 -4.3 EAL domain-containing protein compare
IAI47_16995 -1.6 -2.2 protein YrbN compare
IAI47_18410 -1.5 -3.9 diaminopimelate epimerase compare
IAI47_13765 -1.5 -2.4 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_05520 -1.5 -1.7 tRNA-Ala compare
IAI47_04400 -1.5 -5.0 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_11480 -1.5 -3.7 hypothetical protein compare
IAI47_18830 -1.4 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_00870 -1.4 -1.0 50S ribosomal protein L31 compare
IAI47_00300 -1.4 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_16095 -1.4 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_07015 -1.4 -5.2 ABC transporter ATP-binding protein compare
IAI47_05465 -1.3 -4.3 bile acid:sodium symporter compare
IAI47_18400 -1.3 -2.4 tyrosine recombinase XerC compare
IAI47_06245 -1.3 -2.6 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_03595 -1.2 -5.0 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_08165 -1.2 -6.2 flagella biosynthesis regulatory protein FliZ compare
IAI47_04835 -1.2 -5.4 ATP-dependent RNA helicase SrmB compare
IAI47_07010 -1.2 -2.2 ABC transporter permease compare
IAI47_05155 -1.2 -9.0 polyphosphate kinase 1 compare
IAI47_11310 -1.2 -2.6 redox-regulated ATPase YchF compare
IAI47_06355 -1.2 -7.0 transcriptional regulator LrhA compare
IAI47_00465 -1.2 -2.6 ribosome-dependent GTPase TypA compare
IAI47_01365 -1.2 -1.5 inorganic phosphate transporter PitA compare
IAI47_03685 -1.2 -5.9 erythrose-4-phosphate dehydrogenase compare
IAI47_00515 -1.2 -2.6 DNA-directed RNA polymerase subunit omega compare
IAI47_12920 -1.2 -3.0 thioredoxin-disulfide reductase compare
IAI47_12175 -1.1 -2.2 anti-sigma-28 factor FlgM compare
IAI47_18145 -1.1 -1.1 elongation factor Tu compare
IAI47_02090 -1.1 -3.3 elongation factor Tu compare
IAI47_18520 -1.1 -9.5 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_13755 -1.1 -5.3 succinate dehydrogenase flavoprotein subunit compare
IAI47_05195 -1.1 -2.0 DnaA inactivator Hda compare
IAI47_11475 -1.1 -1.3 hypothetical protein compare
IAI47_14295 -1.1 -3.2 hypothetical protein compare
IAI47_10890 -1.0 -8.6 FAD-binding oxidoreductase compare
IAI47_10775 -1.0 -3.9 ribonuclease T compare
IAI47_10725 -1.0 -1.6 DUF1656 domain-containing protein compare
IAI47_18715 -1.0 -1.9 YibL family ribosome-associated protein compare
IAI47_03610 -1.0 -3.5 YqgE/AlgH family protein compare
IAI47_03680 -1.0 -6.1 transketolase compare
IAI47_21690 -1.0 -5.4 TetR/AcrR family transcriptional regulator compare
IAI47_07475 -1.0 -0.9 hypothetical protein compare
IAI47_04425 -1.0 -5.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_12885 -1.0 -5.5 pyruvate formate lyase 1-activating protein compare
IAI47_13635 -1.0 -5.3 quinolinate synthase NadA compare
IAI47_18815 -1.0 -5.3 4'-phosphopantetheinyl transferase superfamily protein compare
IAI47_06240 -1.0 -5.4 aspartate-semialdehyde dehydrogenase compare
IAI47_14325 -0.9 -0.8 ribosome-associated protein YbcJ compare
IAI47_06135 -0.9 -2.8 phosphohistidine phosphatase SixA compare
IAI47_17255 -0.9 -1.3 DUF1043 family protein compare
IAI47_18215 -0.9 -1.3 Trk system potassium transporter TrkH compare
IAI47_05400 -0.9 -4.9 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI47_06270 -0.9 -4.6 colicin V production protein compare
IAI47_13750 -0.9 -2.4 succinate dehydrogenase iron-sulfur subunit compare
IAI47_12085 -0.9 -3.9 phosphate acyltransferase PlsX compare
IAI47_05035 -0.9 -1.4 nucleoside-diphosphate kinase compare
IAI47_11450 -0.9 -3.6 ankyrin repeat domain-containing protein compare
IAI47_21665 -0.9 -1.3 DUF333 domain-containing protein compare
IAI47_17000 -0.9 -5.5 lipoprotein NlpI compare
IAI47_01525 -0.9 -3.4 DUF2500 domain-containing protein compare
IAI47_20995 -0.9 -2.1 hypothetical protein compare
IAI47_05580 -0.8 -1.3 membrane protein YpdK compare
IAI47_08450 -0.8 -1.8 Holliday junction branch migration DNA helicase RuvB compare
IAI47_13950 -0.8 -1.0 PhoH family protein compare
IAI47_02345 -0.8 -1.2 5S ribosomal RNA compare
IAI47_13310 -0.8 -2.4 MerR family transcriptional regulator compare
IAI47_01820 -0.8 -3.4 two-component system response regulator OmpR compare
IAI47_21880 -0.8 -0.7 ParA family protein compare
IAI47_01025 -0.8 -3.6 acetolactate synthase 2 small subunit compare
IAI47_09095 -0.8 -2.7 YciU family protein compare
IAI47_00675 -0.8 -6.8 glycosyltransferase family 9 protein compare
IAI47_04450 -0.8 -2.2 tRNA-Ala compare
IAI47_03040 -0.8 -4.3 TetR/AcrR family transcriptional regulator compare
IAI47_07005 -0.8 -2.5 glycosyltransferase family 4 protein compare
IAI47_08355 -0.8 -1.7 flagellar protein FlhE compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress Cobalt chloride hexahydrate across organisms