Experiment set1IT067 for Phocaeicola vulgatus CL09T03C04

Compare to:

L-Fucose 20 mM carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS08840 -7.3 -12.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS15870 -6.9 -8.2 ATP phosphoribosyltransferase compare
HMPREF1058_RS12115 -6.8 -13.6 acetylglutamate kinase compare
HMPREF1058_RS08845 -6.7 -12.9 argininosuccinate synthase compare
HMPREF1058_RS14785 -6.6 -4.6 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS14725 -6.1 -14.2 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS12780 -6.0 -13.9 M20 family metallo-hydrolase compare
HMPREF1058_RS06180 -5.9 -7.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS08850 -5.9 -12.8 N-acetyltransferase compare
HMPREF1058_RS15885 -5.8 -11.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS14565 -5.7 -17.4 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS12275 -5.7 -15.8 L-fucose isomerase conserved
HMPREF1058_RS14720 -5.7 -19.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS14795 -5.6 -9.4 prephenate dehydratase compare
HMPREF1058_RS12105 -5.6 -6.6 shikimate kinase compare
HMPREF1058_RS14550 -5.6 -16.0 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS02410 -5.5 -24.7 methylmalonyl-CoA mutase compare
HMPREF1058_RS14555 -5.5 -3.7 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS08645 -5.5 -16.4 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS09675 -5.4 -7.3 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS08650 -5.4 -14.8 glutamate 5-kinase compare
HMPREF1058_RS09585 -5.4 -20.8 argininosuccinate lyase compare
HMPREF1058_RS02405 -5.4 -21.9 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS04065 -5.4 -3.4 VWA domain-containing protein compare
HMPREF1058_RS14610 -5.3 -19.7 adenylosuccinate synthase compare
HMPREF1058_RS06195 -5.3 -7.3 diaminopimelate decarboxylase compare
HMPREF1058_RS14770 -5.3 -11.4 prephenate dehydrogenase compare
HMPREF1058_RS03000 -5.3 -9.5 IMP dehydrogenase compare
HMPREF1058_RS14730 -5.2 -13.6 threonine synthase compare
HMPREF1058_RS11270 -5.2 -13.9 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS07955 -5.2 -15.3 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS15880 -5.1 -14.0 histidinol-phosphate transaminase compare
HMPREF1058_RS08860 -5.1 -13.5 rhamnulokinase compare
HMPREF1058_RS14920 -5.1 -13.0 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS04300 -5.1 -3.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS12270 -5.0 -19.2 L-fucose:H+ symporter permease conserved
HMPREF1058_RS04080 -5.0 -3.5 AAA family ATPase compare
HMPREF1058_RS08830 -5.0 -13.4 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS08875 -4.9 -18.2 rhamnulose-1-phosphate aldolase compare
HMPREF1058_RS16505 -4.9 -11.4 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS14545 -4.9 -13.9 2-isopropylmalate synthase compare
HMPREF1058_RS16815 -4.9 -14.9 dihydroxy-acid dehydratase compare
HMPREF1058_RS07200 -4.8 -14.2 tryptophan synthase subunit alpha compare
HMPREF1058_RS16820 -4.8 -13.8 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS00565 -4.7 -12.9 hemolysin III family protein compare
HMPREF1058_RS06170 -4.7 -7.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS15875 -4.7 -12.5 histidinol dehydrogenase compare
HMPREF1058_RS16760 -4.7 -5.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS08855 -4.7 -10.5 arginine repressor compare
HMPREF1058_RS15435 -4.7 -13.4 hypothetical protein compare
HMPREF1058_RS18205 -4.6 -5.5 ferrous iron transport protein B compare
HMPREF1058_RS10080 -4.6 -18.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS02220 -4.5 -9.6 branched-chain amino acid aminotransferase compare
HMPREF1058_RS08325 -4.5 -8.8 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS04295 -4.5 -6.1 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS10995 -4.5 -11.9 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS18695 -4.5 -4.3 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS08025 -4.5 -9.9 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS10075 -4.4 -14.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS08640 -4.4 -5.2 acetylornithine carbamoyltransferase compare
HMPREF1058_RS06175 -4.4 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS04070 -4.4 -6.0 hypothetical protein compare
HMPREF1058_RS16835 -4.4 -10.6 ketol-acid reductoisomerase compare
HMPREF1058_RS03085 -4.2 -2.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS14200 -4.2 -18.3 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS12490 -4.2 -5.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS07190 -4.2 -10.0 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS15075 -4.1 -12.7 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS17815 -4.1 -8.7 MFS transporter compare
HMPREF1058_RS07170 -4.0 -11.3 tryptophan synthase subunit beta compare
HMPREF1058_RS03800 -4.0 -12.4 serine hydroxymethyltransferase compare
HMPREF1058_RS16510 -4.0 -5.5 methylmalonyl-CoA epimerase compare
HMPREF1058_RS02975 -4.0 -4.7 hypothetical protein compare
HMPREF1058_RS07185 -3.9 -10.7 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS14285 -3.9 -3.6 DUF5056 domain-containing protein compare
HMPREF1058_RS05780 -3.9 -13.6 PD40 domain-containing protein compare
HMPREF1058_RS04075 -3.8 -3.7 DUF58 domain-containing protein compare
HMPREF1058_RS14590 -3.8 -4.5 AraC family transcriptional regulator compare
HMPREF1058_RS14005 -3.8 -4.5 3-dehydroquinate synthase compare
HMPREF1058_RS14835 -3.8 -6.7 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS01405 -3.8 -9.4 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS08295 -3.8 -8.3 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS01540 -3.8 -10.5 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS13970 -3.7 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS01575 -3.7 -10.7 precorrin-2 C(20)-methyltransferase compare
HMPREF1058_RS15375 -3.7 -3.5 DUF4369 domain-containing protein compare
HMPREF1058_RS01395 -3.7 -9.1 cobyric acid synthase compare
HMPREF1058_RS05140 -3.6 -4.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS01280 -3.6 -6.9 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1058_RS16500 -3.6 -7.9 OadG family protein compare
HMPREF1058_RS01550 -3.6 -11.6 precorrin-4 C(11)-methyltransferase compare
HMPREF1058_RS16730 -3.6 -4.2 chorismate synthase compare
HMPREF1058_RS04045 -3.5 -7.8 tetratricopeptide repeat protein compare
HMPREF1058_RS14790 -3.5 -11.7 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS11930 -3.5 -4.7 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS03535 -3.5 -2.4 UvrD-helicase domain-containing protein compare
HMPREF1058_RS13795 -3.5 -17.2 DUF4954 family protein compare
HMPREF1058_RS02485 -3.5 -9.4 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS01270 -3.4 -7.9 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS08060 -3.4 -10.8 hypothetical protein compare
HMPREF1058_RS01570 -3.4 -9.0 ABC transporter substrate-binding protein compare
HMPREF1058_RS00590 -3.3 -6.7 hypothetical protein compare
HMPREF1058_RS01385 -3.3 -9.7 cobalamin biosynthesis protein CobD compare
HMPREF1058_RS01565 -3.3 -10.5 iron ABC transporter permease compare
HMPREF1058_RS04050 -3.3 -7.6 protein BatD compare
HMPREF1058_RS17035 -3.3 -10.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS11730 -3.2 -3.0 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS14560 -3.2 -10.6 2-isopropylmalate synthase compare
HMPREF1058_RS07175 -3.1 -11.1 anthranilate synthase component I family protein compare
HMPREF1058_RS02495 -3.1 -12.8 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS02170 -3.1 -11.9 hypothetical protein compare
HMPREF1058_RS11205 -3.1 -3.4 radical SAM protein compare
HMPREF1058_RS17155 -3.1 -5.8 dCMP deaminase family protein compare
HMPREF1058_RS15915 -3.0 -5.7 OmpH family outer membrane protein compare
HMPREF1058_RS06335 -3.0 -11.9 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS06190 -3.0 -7.8 aspartate kinase compare
HMPREF1058_RS07195 -3.0 -4.6 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS02755 -3.0 -3.5 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS08870 -3.0 -12.1 L-rhamnose/proton symporter RhaT compare
HMPREF1058_RS08915 -3.0 -15.3 AraC family transcriptional regulator conserved
HMPREF1058_RS12070 -2.9 -6.1 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS13635 -2.9 -5.7 gliding motility lipoprotein GldH compare
HMPREF1058_RS14490 -2.9 -16.4 S9 family peptidase compare
HMPREF1058_RS15395 -2.9 -2.0 dihydroorotase compare
HMPREF1058_RS12505 -2.9 -6.1 RNA polymerase factor sigma-54 compare
HMPREF1058_RS00700 -2.9 -11.0 DUF4831 family protein compare
HMPREF1058_RS10820 -2.9 -16.1 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS16495 -2.9 -3.8 biotin/lipoyl-binding protein compare
HMPREF1058_RS08865 -2.9 -10.3 L-rhamnose isomerase compare
HMPREF1058_RS17205 -2.9 -3.3 DUF4199 domain-containing protein compare
HMPREF1058_RS03970 -2.8 -1.9 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS16260 -2.8 -6.8 hotdog fold thioesterase compare
HMPREF1058_RS10495 -2.8 -2.7 rhomboid family intramembrane serine protease compare
HMPREF1058_RS17080 -2.8 -3.6 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS05145 -2.8 -9.8 ATP-binding protein compare
HMPREF1058_RS10720 -2.8 -6.4 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS02480 -2.8 -7.8 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS02750 -2.7 -4.4 BamA/TamA family outer membrane protein compare
HMPREF1058_RS04375 -2.7 -8.9 carbon-nitrogen hydrolase compare
HMPREF1058_RS06320 -2.6 -9.9 electron transport complex subunit RsxA compare
HMPREF1058_RS16750 -2.6 -1.8 shikimate dehydrogenase compare
HMPREF1058_RS00525 -2.6 -5.8 DUF4290 domain-containing protein compare
HMPREF1058_RS09750 -2.6 -9.3 glycosyltransferase compare
HMPREF1058_RS16255 -2.6 -11.0 isochorismate synthase compare
HMPREF1058_RS07670 -2.5 -4.8 HAMP domain-containing histidine kinase compare
HMPREF1058_RS10920 -2.5 -4.1 viroplasmin family protein compare
HMPREF1058_RS15565 -2.5 -18.8 hypothetical protein compare
HMPREF1058_RS05805 -2.5 -12.7 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
HMPREF1058_RS11920 -2.5 -10.5 DUF2975 domain-containing protein compare
HMPREF1058_RS11890 -2.5 -5.8 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS16250 -2.5 -11.1 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS08835 -2.5 -12.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS06340 -2.5 -7.9 electron transport complex subunit RsxC compare
HMPREF1058_RS11375 -2.4 -1.9 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS01545 -2.4 -5.5 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
HMPREF1058_RS14505 -2.4 -2.3 mechanosensitive ion channel compare
HMPREF1058_RS01390 -2.4 -6.8 pyridoxal phosphate-dependent class II aminotransferase compare
HMPREF1058_RS15380 -2.4 -12.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS02540 -2.4 -4.2 cyclodeaminase/cyclohydrolase family protein compare
HMPREF1058_RS01555 -2.4 -7.6 cobalt-precorrin-5B (C(1))-methyltransferase compare
HMPREF1058_RS09685 -2.4 -13.1 tetratricopeptide repeat protein compare
HMPREF1058_RS04015 -2.4 -8.3 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1058_RS01560 -2.4 -5.8 ABC transporter ATP-binding protein compare
HMPREF1058_RS11915 -2.4 -2.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS03530 -2.4 -2.2 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS06325 -2.3 -3.8 electron transport complex subunit E compare
HMPREF1058_RS16845 -2.3 -5.4 SurA N-terminal domain-containing protein compare
HMPREF1058_RS06345 -2.3 -4.6 Fe-S cluster domain-containing protein compare
HMPREF1058_RS06350 -2.3 -9.1 SoxR reducing system RseC family protein compare
HMPREF1058_RS11940 -2.2 -5.1 DUF3836 domain-containing protein compare
HMPREF1058_RS12280 -2.2 -5.9 GntR family transcriptional regulator compare
HMPREF1058_RS14020 -2.2 -10.9 cardiolipin synthase compare
HMPREF1058_RS10955 -2.2 -8.1 phosphatase PAP2 family protein compare
HMPREF1058_RS09745 -2.2 -9.3 glycosyltransferase compare
HMPREF1058_RS00560 -2.2 -3.8 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS00515 -2.1 -10.4 YicC family protein compare
HMPREF1058_RS11310 -2.1 -7.6 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS07040 -2.1 -13.0 tetratricopeptide repeat protein compare
HMPREF1058_RS12110 -2.1 -7.8 biosynthetic arginine decarboxylase compare
HMPREF1058_RS14465 -2.1 -3.6 enoyl-ACP reductase compare
HMPREF1058_RS05765 -2.1 -11.1 nucleoside phosphorylase compare
HMPREF1058_RS02545 -2.1 -11.6 histidine ammonia-lyase compare
HMPREF1058_RS03245 -2.0 -2.3 thiamine phosphate synthase compare
HMPREF1058_RS12705 -2.0 -8.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS17160 -2.0 -3.7 DUF4847 family protein compare
HMPREF1058_RS14600 -2.0 -5.5 DNA alkylation repair protein compare
HMPREF1058_RS01275 -2.0 -8.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1058_RS03980 -2.0 -1.7 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS02800 -1.9 -7.4 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS11925 -1.9 -4.0 DUF2975 domain-containing protein compare
HMPREF1058_RS07575 -1.9 -4.6 MCE family protein compare
HMPREF1058_RS15645 -1.9 -6.1 NUDIX hydrolase compare
HMPREF1058_RS16440 -1.9 -3.9 endonuclease MutS2 compare
HMPREF1058_RS01925 -1.9 -4.4 helix-turn-helix domain-containing protein compare
HMPREF1058_RS17060 -1.9 -6.8 HAD family hydrolase compare
HMPREF1058_RS18265 -1.9 -4.0 aspartate 1-decarboxylase compare
HMPREF1058_RS14120 -1.9 -8.2 DUF349 domain-containing protein compare
HMPREF1058_RS01745 -1.9 -5.9 PorT family protein compare
HMPREF1058_RS10290 -1.8 -4.3 hypothetical protein compare
HMPREF1058_RS16690 -1.8 -8.8 NTP transferase domain-containing protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Fucose in Phocaeicola vulgatus CL09T03C04

For carbon source L-Fucose across organisms