Experiment set1IT067 for Paraburkholderia graminis OAS925

Compare to:

D-Cellobiose carbon source

200 most important genes:

  gene name fitness t score description  
ABIE53_005863 -4.3 -11.8 cyclic di-GMP phosphodiesterase Gmr compare
ABIE53_004817 -4.0 -9.2 O-succinylhomoserine sulfhydrylase compare
ABIE53_001544 -3.9 -2.7 coproporphyrinogen III oxidase compare
ABIE53_004068 -3.9 -3.0 putative NBD/HSP70 family sugar kinase compare
ABIE53_003428 -3.9 -3.8 phosphoglycerate kinase compare
ABIE53_003186 -3.9 -7.9 disulfide bond formation protein DsbB compare
ABIE53_005577 -3.9 -7.4 glucose/mannose transport system permease protein conserved
ABIE53_001225 -3.8 -5.8 LysR family cys regulon transcriptional activator compare
ABIE53_003231 -3.8 -2.5 DNA-directed RNA polymerase subunit omega compare
ABIE53_000875 -3.8 -5.8 tRNA dimethylallyltransferase compare
ABIE53_000414 -3.8 -19.6 homoserine O-acetyltransferase compare
ABIE53_002116 -3.7 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_003305 -3.7 -8.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_001232 -3.7 -2.5 sirohydrochlorin cobaltochelatase compare
ABIE53_005596 -3.7 -10.7 DNA-binding IclR family transcriptional regulator compare
ABIE53_000885 -3.7 -7.8 biopolymer transport protein TolQ compare
ABIE53_000667 -3.6 -10.4 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_001226 -3.6 -8.1 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_000666 -3.6 -4.9 preprotein translocase subunit SecB compare
ABIE53_001229 -3.6 -8.7 sulfate adenylyltransferase subunit 2 compare
ABIE53_004811 -3.6 -7.6 tryptophan synthase alpha chain compare
ABIE53_002004 -3.6 -9.7 anti-sigma factor RsiW compare
ABIE53_000403 -3.6 -4.8 rod shape-determining protein MreD compare
ABIE53_005578 -3.5 -8.2 multiple sugar transport system ATP-binding protein conserved
ABIE53_000061 -3.5 -6.3 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_000598 -3.5 -5.3 thiol:disulfide interchange protein DsbA compare
ABIE53_000883 -3.4 -1.9 colicin import membrane protein compare
ABIE53_003306 -3.4 -9.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_005575 -3.4 -9.1 glucose/mannose transport system substrate-binding protein conserved
ABIE53_006508 -3.4 -5.6 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_001228 -3.4 -7.1 phosphoadenosine phosphosulfate reductase compare
ABIE53_001230 -3.4 -11.4 sulfate adenylyltransferase subunit 1 compare
ABIE53_003157 -3.4 -9.6 chorismate mutase/prephenate dehydratase compare
ABIE53_001314 -3.3 -12.6 phosphoenolpyruvate carboxylase compare
ABIE53_000884 -3.3 -5.5 biopolymer transport protein TolR compare
ABIE53_002739 -3.3 -3.9 outer membrane protein assembly factor BamB compare
ABIE53_003734 -3.3 -11.3 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_005574 -3.3 -9.6 beta-glucosidase conserved
ABIE53_003017 -3.2 -12.2 trehalose 6-phosphate phosphatase compare
ABIE53_003737 -3.2 -18.9 outer membrane protein compare
ABIE53_004803 -3.2 -7.1 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_000768 -3.2 -13.3 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_004804 -3.2 -8.3 3-isopropylmalate dehydrogenase compare
ABIE53_000045 -3.1 -9.8 5-formyltetrahydrofolate cyclo-ligase compare
ABIE53_003640 -3.1 -8.3 anthranilate synthase component 1 compare
ABIE53_004325 -3.1 -3.0 hypothetical protein compare
ABIE53_003749 -3.1 -7.8 diaminopimelate decarboxylase compare
ABIE53_000063 -3.1 -4.6 adenosylhomocysteinase compare
ABIE53_002117 -3.1 -6.4 ATP-dependent Lon protease compare
ABIE53_000663 -3.0 -16.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_000838 -3.0 -9.4 starvation-inducible DNA-binding protein compare
ABIE53_001588 -3.0 -5.7 triosephosphate isomerase compare
ABIE53_003536 -3.0 -8.5 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_004801 -3.0 -8.8 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit compare
ABIE53_003158 -3.0 -5.6 phosphoserine aminotransferase compare
ABIE53_005576 -3.0 -7.3 glucose/mannose transport system permease protein conserved
ABIE53_000830 -2.9 -4.6 preprotein translocase subunit YajC compare
ABIE53_002794 -2.9 -2.8 PAS domain S-box-containing protein compare
ABIE53_003588 -2.9 -5.8 glutamate 5-kinase compare
ABIE53_000840 -2.9 -6.1 pyrroline-5-carboxylate reductase compare
ABIE53_004866 -2.9 -18.9 RNA polymerase primary sigma factor compare
ABIE53_002857 -2.9 -12.8 phosphomethylpyrimidine synthase compare
ABIE53_002352 -2.8 -9.8 AcrR family transcriptional regulator compare
ABIE53_001227 -2.8 -2.4 uncharacterized protein (DUF934 family) compare
ABIE53_000423 -2.8 -3.3 DnaK suppressor protein compare
ABIE53_000731 -2.8 -13.8 putative PurR-regulated permease PerM compare
ABIE53_003159 -2.8 -7.7 phosphoserine aminotransferase compare
ABIE53_001546 -2.7 -3.7 YebC/PmpR family DNA-binding regulatory protein compare
ABIE53_004227 -2.7 -6.7 signal transduction histidine kinase compare
ABIE53_003565 -2.6 -5.5 thiol-disulfide isomerase/thioredoxin compare
ABIE53_003517 -2.6 -6.5 phosphogluconate dehydratase compare
ABIE53_000413 -2.6 -6.4 methionine biosynthesis protein MetW compare
ABIE53_001273 -2.6 -12.1 glucokinase compare
ABIE53_004255 -2.6 -2.1 hypothetical protein compare
ABIE53_006090 -2.6 -2.3 antitoxin MazE compare
ABIE53_003752 -2.6 -1.4 cytochrome c-type biogenesis protein CcsB compare
ABIE53_003494 -2.6 -3.5 Holliday junction DNA helicase RuvA compare
ABIE53_002762 -2.5 -4.5 enolase compare
ABIE53_003735 -2.5 -4.8 hypothetical protein compare
ABIE53_001347 -2.5 -12.1 putative porin compare
ABIE53_001846 -2.5 -6.2 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_003162 -2.5 -2.9 OOP family OmpA-OmpF porin compare
ABIE53_001644 -2.5 -4.1 aromatic-amino-acid transaminase compare
ABIE53_005821 -2.5 -1.4 DNA-binding MurR/RpiR family transcriptional regulator compare
ABIE53_000795 -2.4 -8.6 MurNAc alpha-1-phosphate uridylyltransferase compare
ABIE53_003043 -2.4 -15.2 RNA polymerase sigma-70 factor (ECF subfamily) compare
ABIE53_004858 -2.4 -5.2 farnesyl diphosphate synthase compare
ABIE53_004774 -2.4 -6.8 DeoR/GlpR family transcriptional regulator of sugar metabolism compare
ABIE53_000678 -2.3 -8.4 cytochrome c oxidase subunit 3 compare
ABIE53_001140 -2.3 -3.1 dTDP-4-dehydrorhamnose reductase compare
ABIE53_004495 -2.3 -3.0 hypothetical protein compare
ABIE53_003391 -2.3 -5.3 DNA-binding transcriptional regulator LsrR (DeoR family) compare
ABIE53_003815 -2.3 -3.4 tRNA-Arg compare
ABIE53_000046 -2.3 -10.7 putative MarR family transcription regulator compare
ABIE53_002077 -2.2 -2.1 phosphoserine phosphatase compare
ABIE53_002528 -2.2 -2.1 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_001280 -2.2 -5.4 multiple sugar transport system ATP-binding protein compare
ABIE53_000858 -2.2 -12.1 heat-inducible transcriptional repressor compare
ABIE53_003733 -2.2 -4.3 glutamate synthase domain-containing protein 3 compare
ABIE53_002424 -2.2 -7.9 anti-sigma factor RsiW compare
ABIE53_003877 -2.2 -11.6 DeoR/GlpR family transcriptional regulator of sugar metabolism compare
ABIE53_000262 -2.2 -2.5 chromosome partitioning protein compare
ABIE53_003674 -2.2 -6.8 AcrR family transcriptional regulator compare
ABIE53_000465 -2.2 -13.0 cation diffusion facilitator family transporter compare
ABIE53_003535 -2.2 -13.0 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_003495 -2.1 -4.0 Holliday junction DNA helicase RuvB compare
ABIE53_000683 -2.1 -10.8 protoheme IX farnesyltransferase compare
ABIE53_004828 -2.1 -13.9 starch synthase (maltosyl-transferring) compare
ABIE53_002101 -2.1 -7.6 two-component system phosphate regulon response regulator OmpR compare
ABIE53_003287 -2.1 -9.2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
ABIE53_005070 -2.0 -8.1 DNA-binding GntR family transcriptional regulator compare
ABIE53_001963 -2.0 -1.1 hypothetical protein compare
ABIE53_002734 -2.0 -6.5 membrane protease subunit HflC compare
ABIE53_000153 -2.0 -13.4 O-antigen ligase compare
ABIE53_001421 -2.0 -2.6 cytochrome c553 compare
ABIE53_001275 -2.0 -2.0 glucose-6-phosphate 1-dehydrogenase compare
ABIE53_000614 -1.9 -4.5 rubrerythrin compare
ABIE53_003445 -1.9 -4.8 succinyl-CoA synthetase beta subunit compare
ABIE53_002335 -1.9 -9.5 LacI family kdg operon repressor compare
ABIE53_001770 -1.9 -4.4 arginine N-succinyltransferase compare
ABIE53_003434 -1.9 -8.1 heptosyltransferase-2 compare
ABIE53_000978 -1.9 -2.4 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_003531 -1.9 -2.1 Fur family ferric uptake transcriptional regulator compare
ABIE53_003444 -1.9 -5.0 succinyl-CoA synthetase alpha subunit compare
ABIE53_000682 -1.9 -9.8 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_001276 -1.9 -8.6 glucose-6-phosphate 1-dehydrogenase compare
ABIE53_003586 -1.9 -8.7 putative (di)nucleoside polyphosphate hydrolase compare
ABIE53_001667 -1.8 -4.0 hypothetical protein compare
ABIE53_001277 -1.8 -9.9 glucose/mannose transport system substrate-binding protein compare
ABIE53_006490 -1.8 -1.9 DNA-binding transcriptional MerR regulator compare
ABIE53_002862 -1.8 -8.5 outer membrane protein assembly factor BamC compare
ABIE53_000674 -1.8 -8.0 cytochrome c oxidase subunit 1 compare
ABIE53_005166 -1.8 -4.5 DNA-binding GntR family transcriptional regulator compare
ABIE53_002735 -1.8 -7.6 membrane protease subunit HflK compare
ABIE53_003298 -1.8 -5.2 phosphoribosylglycinamide formyltransferase-1 compare
ABIE53_002703 -1.7 -1.4 aspartate kinase compare
ABIE53_003160 -1.7 -9.4 hypothetical protein compare
ABIE53_001278 -1.7 -7.6 glucose/mannose transport system permease protein compare
ABIE53_005529 -1.7 -3.0 putative transcriptional regulator YheO compare
ABIE53_001420 -1.7 -4.4 cytochrome c553 compare
ABIE53_005950 -1.7 -1.9 plastocyanin compare
ABIE53_005230 -1.6 -2.5 homoprotocatechuate degradation regulator HpaR compare
ABIE53_001279 -1.6 -9.6 glucose/mannose transport system permease protein compare
ABIE53_006030 -1.6 -2.2 hypothetical protein compare
ABIE53_002923 -1.6 -3.4 NAD(P)H dehydrogenase (quinone) compare
ABIE53_003685 -1.6 -8.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE53_000650 -1.6 -8.8 thiol-disulfide isomerase/thioredoxin compare
ABIE53_000394 -1.5 -8.8 nitrogen fixation/metabolism regulation signal transduction histidine kinase compare
ABIE53_005752 -1.5 -5.2 DNA-binding PadR family transcriptional regulator compare
ABIE53_002729 -1.5 -4.8 KUP system potassium uptake protein compare
ABIE53_006380 -1.5 -2.6 hypothetical protein compare
ABIE53_003580 -1.4 -3.6 uncharacterized protein compare
ABIE53_001135 -1.4 -2.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
ABIE53_006072 -1.4 -4.3 DNA-binding IclR family transcriptional regulator compare
ABIE53_005782 -1.4 -0.9 hypothetical protein compare
ABIE53_005243 -1.4 -0.9 hypothetical protein compare
ABIE53_005703 -1.4 -2.6 two-component system copper resistance phosphate regulon response regulator CusR compare
ABIE53_001572 -1.4 -2.8 hypothetical protein compare
ABIE53_002726 -1.4 -6.6 hypothetical protein compare
ABIE53_000567 -1.4 -1.7 Lrp/AsnC family leucine-responsive transcriptional regulator compare
ABIE53_001991 -1.4 -4.6 sulfate transport system permease protein compare
ABIE53_002546 -1.4 -2.0 cell wall-associated NlpC family hydrolase compare
ABIE53_001795 -1.3 -1.8 CrcB protein compare
ABIE53_005142 -1.3 -1.1 acyl-CoA reductase-like NAD-dependent aldehyde dehydrogenase compare
ABIE53_000237 -1.3 -3.3 glycine cleavage system H protein compare
ABIE53_002496 -1.3 -8.8 regulator of sigma E protease compare
ABIE53_002640 -1.3 -1.1 enoyl-CoA hydratase/carnithine racemase compare
ABIE53_002168 -1.3 -5.5 hypothetical protein compare
ABIE53_005841 -1.3 -1.6 2-furoyl-CoA dehydrogenase FAD binding subunit compare
ABIE53_001297 -1.3 -6.2 ribosomal protein S18 acetylase RimI-like enzyme compare
ABIE53_001416 -1.3 -5.7 transaldolase compare
ABIE53_003465 -1.3 -5.2 DeoR family glycerol-3-phosphate regulon repressor compare
ABIE53_004907 -1.3 -5.7 LacI family transcriptional regulator compare
ABIE53_004826 -1.3 -8.3 1,4-alpha-glucan branching enzyme compare
ABIE53_003684 -1.3 -10.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
ABIE53_004586 -1.3 -1.9 ribosomal protein S18 acetylase RimI-like enzyme compare
ABIE53_004775 -1.3 -4.5 transketolase compare
ABIE53_005283 -1.2 -1.8 hypothetical protein compare
ABIE53_004852 -1.2 -8.3 DNA polymerase-1 compare
ABIE53_003683 -1.2 -9.1 ubiquinol-cytochrome c reductase cytochrome c1 subunit compare
ABIE53_001538 -1.2 -5.7 ribonuclease G compare
ABIE53_004459 -1.2 -4.4 DNA-binding MarR family transcriptional regulator compare
ABIE53_003390 -1.2 -2.5 xylulokinase compare
ABIE53_003688 -1.2 -9.4 sec-independent protein translocase protein TatC compare
ABIE53_001571 -1.2 -4.1 putative Fe-S protein YdhL (DUF1289 family) compare
ABIE53_000649 -1.2 -3.0 peroxiredoxin compare
ABIE53_003410 -1.2 -5.9 TetR/AcrR family acrAB operon transcriptional repressor compare
ABIE53_000798 -1.2 -3.1 peptidyl-prolyl cis-trans isomerase SurA compare
ABIE53_000657 -1.2 -6.2 glutathione synthase compare
ABIE53_004496 -1.2 -3.8 DNA-binding IclR family transcriptional regulator compare
ABIE53_004048 -1.2 -2.9 hypothetical protein compare
ABIE53_005312 -1.2 -1.7 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_000313 -1.2 -9.0 glutamate--cysteine ligase compare
ABIE53_001503 -1.2 -1.6 FixJ family two-component response regulator compare
ABIE53_002138 -1.2 -4.2 glucose-6-phosphate isomerase compare
ABIE53_000833 -1.2 -4.1 ATP-dependent DNA helicase RecG compare
ABIE53_002316 -1.2 -9.2 stage V sporulation protein R compare
ABIE53_004152 -1.2 -1.2 hypothetical protein compare
ABIE53_003260 -1.1 -5.1 tRNA (guanine-N7-)-methyltransferase compare
ABIE53_001720 -1.1 -1.3 LysR family transcriptional regulator of abg operon compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Cellobiose in Paraburkholderia graminis OAS925

For carbon source D-Cellobiose across organisms