Experiment set1IT066 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_10670 -4.9 -7.4 shikimate dehydrogenase compare
AO353_13070 -4.9 -6.7 phosphoserine phosphatase compare
AO353_12070 -4.6 -8.4 imidazoleglycerol-phosphate dehydratase compare
AO353_07220 -4.6 -7.1 anthranilate synthase compare
AO353_12090 -4.4 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20625 -4.4 -4.3 3-isopropylmalate dehydratase compare
AO353_05115 -4.4 -10.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_00430 -4.4 -5.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12520 -4.3 -12.2 glutamate synthase compare
AO353_20635 -4.3 -13.8 3-isopropylmalate dehydrogenase compare
AO353_20665 -4.3 -10.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_05110 -4.2 -12.1 histidinol dehydrogenase compare
AO353_12085 -4.1 -8.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_08185 -4.1 -11.7 methionine biosynthesis protein MetW compare
AO353_08475 -4.1 -9.8 phosphoserine phosphatase compare
AO353_07230 -4.1 -18.2 anthranilate synthase compare
AO353_07210 -4.1 -6.7 indole-3-glycerol-phosphate synthase compare
AO353_08685 -4.0 -9.0 N-acetylglutamate synthase compare
AO353_08345 -4.0 -9.8 dihydroxy-acid dehydratase compare
AO353_12515 -4.0 -23.5 glutamate synthase compare
AO353_14505 -4.0 -14.1 ketol-acid reductoisomerase compare
AO353_20620 -4.0 -8.4 isopropylmalate isomerase compare
AO353_08180 -3.9 -14.3 homoserine O-acetyltransferase compare
AO353_12365 -3.8 -5.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_12075 -3.8 -9.5 imidazole glycerol phosphate synthase subunit HisH compare
AO353_13165 -3.8 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_02075 -3.8 -12.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20695 -3.7 -7.2 O-succinylhomoserine sulfhydrylase compare
AO353_09240 -3.7 -4.4 acetylglutamate kinase compare
AO353_14500 -3.7 -7.5 acetolactate synthase 3 regulatory subunit compare
AO353_12115 -3.7 -4.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_02070 -3.7 -8.8 prephenate dehydratase compare
AO353_07155 -3.6 -8.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12500 -3.5 -2.4 shikimate kinase compare
AO353_14495 -3.5 -13.7 acetolactate synthase 3 catalytic subunit compare
AO353_20540 -3.4 -9.5 aromatic amino acid aminotransferase compare
AO353_04105 -3.3 -10.7 argininosuccinate synthase compare
AO353_14370 -3.3 -8.1 glucose-6-phosphate isomerase compare
AO353_08510 -3.2 -6.5 3-phosphoglycerate dehydrogenase compare
AO353_07215 -3.2 -8.3 anthranilate phosphoribosyltransferase compare
AO353_10710 -3.1 -7.2 tryptophan synthase subunit beta compare
AO353_11775 -3.1 -9.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_04155 -3.1 -14.4 ornithine carbamoyltransferase compare
AO353_02800 -3.1 -12.1 C4-dicarboxylate transporter conserved
AO353_12360 -3.1 -10.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_09000 -3.1 -7.6 argininosuccinate lyase compare
AO353_14115 -2.9 -8.0 gamma-glutamyl kinase compare
AO353_15250 -2.9 -4.4 cytochrome B compare
AO353_00620 -2.9 -3.8 cytochrome C oxidase Cbb3 compare
AO353_08015 -2.8 -9.2 5,10-methylenetetrahydrofolate reductase compare
AO353_00825 -2.8 -4.6 porin compare
AO353_02685 -2.8 -5.2 phosphoribosylglycinamide formyltransferase compare
AO353_22800 -2.7 -4.9 sulfite reductase compare
AO353_19060 -2.7 -6.2 CysB family transcriptional regulator compare
AO353_20175 -2.7 -5.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_12460 -2.7 -10.0 malate dehydrogenase compare
AO353_15925 -2.6 -10.7 2-isopropylmalate synthase compare
AO353_11860 -2.5 -8.2 Fis family transcriptional regulator conserved
AO353_03795 -2.1 -3.7 fumarate hydratase compare
AO353_10705 -2.1 -4.6 tryptophan synthase subunit alpha compare
AO353_16940 -2.1 -6.9 deoxycytidine triphosphate deaminase compare
AO353_11850 -2.1 -5.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_03590 -2.0 -4.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_06045 -2.0 -8.7 exodeoxyribonuclease V subunit beta compare
AO353_08165 -2.0 -3.7 pyrroline-5-carboxylate reductase compare
AO353_06720 -1.9 -3.2 NrdR family transcriptional regulator compare
AO353_13640 -1.9 -5.3 histidine kinase compare
AO353_15185 -1.9 -6.1 ATPase compare
AO353_06040 -1.9 -4.7 exodeoxyribonuclease V subunit alpha compare
AO353_09135 -1.8 -2.2 cytochrome C compare
AO353_07355 -1.8 -6.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_14150 -1.8 -2.6 peptidylprolyl isomerase compare
AO353_06495 -1.8 -4.0 gamma-glutamyl phosphate reductase compare
AO353_10445 -1.8 -2.7 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_02250 -1.7 -2.9 chorismate synthase compare
AO353_09040 -1.7 -2.3 diaminopimelate epimerase compare
AO353_01410 -1.7 -3.7 ribonuclease E compare
AO353_01190 -1.7 -2.8 hypothetical protein compare
AO353_03020 -1.6 -6.1 arginine N-succinyltransferase compare
AO353_04355 -1.6 -2.2 homoserine dehydrogenase compare
AO353_26055 -1.6 -3.2 hypothetical protein compare
AO353_03015 -1.6 -4.4 arginine N-succinyltransferase compare
AO353_10945 -1.6 -3.1 cytochrome C compare
AO353_19360 -1.6 -3.5 peroxiredoxin compare
AO353_12105 -1.6 -6.5 peptidase S41 compare
AO353_27650 -1.5 -4.9 cell division protein FtsK compare
AO353_10320 -1.5 -2.7 hypothetical protein compare
AO353_00610 -1.5 -2.5 cytochrome C oxidase Cbb3 compare
AO353_05690 -1.5 -3.9 SsrA-binding protein compare
AO353_14395 -1.5 -4.6 poly(A) polymerase compare
AO353_06050 -1.4 -6.5 exodeoxyribonuclease V subunit gamma compare
AO353_24340 -1.4 -1.2 TetR family transcriptional regulator compare
AO353_02810 -1.4 -7.3 histidine kinase compare
AO353_11770 -1.4 -2.4 molecular chaperone Hsp33 compare
AO353_13140 -1.4 -5.2 tRNA dimethylallyltransferase compare
AO353_24255 -1.3 -3.8 hypothetical protein compare
AO353_11530 -1.3 -6.5 diguanylate cyclase compare
AO353_06320 -1.3 -3.3 AsnC family transcriptional regulator compare
AO353_24130 -1.3 -1.9 hypothetical protein compare
AO353_12345 -1.3 -2.4 twin-arginine protein translocation system subunit TatC compare
AO353_04175 -1.3 -4.5 glycerol uptake facilitator GlpF compare
AO353_00605 -1.3 -5.8 cytochrome C oxidase Cbb3 compare
AO353_06100 -1.3 -2.4 thymidylate synthase compare
AO353_13160 -1.2 -2.6 membrane protease HflC compare
AO353_09015 -1.2 -3.5 DNA-binding protein compare
AO353_00515 -1.2 -3.6 hypothetical protein compare
AO353_00635 -1.2 -3.0 hypothetical protein compare
AO353_17750 -1.2 -2.4 transcriptional regulator compare
AO353_14775 -1.2 -5.5 hypothetical protein compare
AO353_03580 -1.2 -3.4 ATP-dependent DNA helicase RuvB compare
AO353_00490 -1.2 -2.9 PasA protein compare
AO353_22215 -1.2 -3.3 hypothetical protein compare
AO353_26285 -1.1 -1.9 hypothetical protein compare
AO353_19090 -1.1 -1.7 MarR family transcriptional regulator compare
AO353_03585 -1.1 -2.1 ATP-dependent DNA helicase RuvA compare
AO353_19530 -1.1 -1.9 quinohemoprotein amine dehydrogenase compare
AO353_10430 -1.1 -3.1 chromosome partitioning protein ParB compare
AO353_16805 -1.1 -4.9 recombinase RecA compare
AO353_17850 -1.1 -2.4 SAM-dependent methyltransferase compare
AO353_08780 -1.1 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
AO353_21625 -1.1 -2.1 Fe/S biogenesis protein NfuA compare
AO353_27825 -1.1 -3.1 peptidylprolyl isomerase compare
AO353_18745 -1.0 -2.7 flagellar biosynthesis protein flip compare
AO353_01780 -1.0 -7.1 heat-shock protein Hsp90 compare
AO353_03630 -1.0 -7.4 porin compare
AO353_03715 -1.0 -2.3 H-NS histone compare
AO353_03710 -1.0 -2.7 formyltetrahydrofolate deformylase compare
AO353_05105 -1.0 -6.6 histidinol-phosphate aminotransferase compare
AO353_27400 -1.0 -2.4 hypothetical protein compare
AO353_04240 -1.0 -2.1 chemotaxis protein CheW compare
AO353_05075 -1.0 -6.0 adenylylsulfate kinase compare
AO353_06850 -1.0 -3.6 MFS transporter compare
AO353_18890 -1.0 -3.3 cytochrome C compare
AO353_08100 -1.0 -2.8 chemotaxis protein CheY compare
AO353_12710 -1.0 -1.7 thioredoxin compare
AO353_03365 -0.9 -5.4 transcriptional regulator compare
AO353_10435 -0.9 -5.2 chromosome partitioning protein compare
AO353_00750 -0.9 -3.2 GntR family transcriptional regulator compare
AO353_11165 -0.9 -5.3 hypothetical protein compare
AO353_04565 -0.9 -4.0 nucleoid-associated protein compare
AO353_27000 -0.9 -1.8 hypothetical protein compare
AO353_02195 -0.9 -3.3 spermidine synthase compare
AO353_08470 -0.9 -2.7 RNA pyrophosphohydrolase compare
AO353_03235 -0.9 -5.2 glutamate-pyruvate aminotransferase compare
AO353_16810 -0.9 -2.5 recombinase RecX compare
AO353_05695 -0.9 -6.5 transcriptional regulator PdhR compare
AO353_01595 -0.9 -1.7 Flp pilus assembly protein CpaB compare
AO353_14935 -0.9 -2.8 aminopeptidase compare
AO353_03595 -0.9 -3.1 hypothetical protein compare
AO353_14595 -0.8 -4.5 carbonate dehydratase compare
AO353_03615 -0.8 -2.4 cold-shock protein compare
AO353_09890 -0.8 -3.6 phosphate ABC transporter ATP-binding protein compare
AO353_13605 -0.8 -5.0 oxidoreductase compare
AO353_17855 -0.8 -1.9 ribonuclease D compare
AO353_00650 -0.8 -1.9 cytochrome biogenesis protein compare
AO353_28815 -0.8 -2.2 hypothetical protein compare
AO353_20095 -0.8 -3.3 histidine kinase compare
AO353_00955 -0.8 -2.6 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_08880 -0.8 -1.7 exopolyphosphatase compare
AO353_10780 -0.8 -1.3 DNA-binding protein compare
AO353_02320 -0.8 -3.8 allantoinase compare
AO353_19810 -0.8 -2.5 filamentous hemagglutinin compare
AO353_01550 -0.8 -3.3 hypothetical protein compare
AO353_14740 -0.8 -2.1 GTP-binding protein compare
AO353_27410 -0.8 -2.1 hypothetical protein compare
AO353_02040 -0.8 -2.0 integration host factor subunit beta compare
AO353_09440 -0.8 -1.3 type VI secretion protein compare
AO353_22685 -0.8 -2.9 peroxidase compare
AO353_22735 -0.8 -1.9 hypothetical protein compare
AO353_08485 -0.8 -5.7 threonine dehydratase compare
AO353_21630 -0.8 -1.8 precorrin-4 C11-methyltransferase compare
AO353_02060 -0.8 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_05080 -0.8 -5.1 sulfate adenylyltransferase compare
AO353_09045 -0.7 -1.8 hypothetical protein compare
AO353_00460 -0.7 -1.4 TetR family transcriptional regulator compare
AO353_06155 -0.7 -3.9 copper-transporting ATPase compare
AO353_12080 -0.7 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_14940 -0.7 -2.2 malate:quinone oxidoreductase compare
AO353_18780 -0.7 -3.4 cobyrinic acid a,c-diamide synthase compare
AO353_23620 -0.7 -1.4 hypothetical protein compare
AO353_01080 -0.7 -4.8 hypothetical protein compare
AO353_18775 -0.7 -4.0 flagellar biosynthesis protein FlhF compare
AO353_11920 -0.7 -1.0 hypothetical protein compare
AO353_15975 -0.7 -2.4 GntR family transcriptional regulator compare
AO353_10825 -0.7 -5.5 hypothetical protein compare
AO353_19310 -0.7 -1.7 enoyl-CoA hydratase compare
AO353_02640 -0.7 -1.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_09050 -0.7 -2.5 recombinase XerC compare
AO353_10055 -0.7 -5.1 DNA helicase II compare
AO353_17160 -0.7 -1.5 aspartate-semialdehyde dehydrogenase compare
AO353_04650 -0.7 -2.0 molybdenum cofactor biosynthesis protein MoaE compare
AO353_15725 -0.7 -2.1 hypothetical protein compare
AO353_15555 -0.7 -2.6 fumarylacetoacetase compare
AO353_24120 -0.7 -1.7 hypothetical protein compare
AO353_23870 -0.7 -2.2 DNA-binding protein compare
AO353_21615 -0.7 -4.8 methionine synthase compare
AO353_09660 -0.7 -1.5 hypothetical protein compare
AO353_12145 -0.7 -2.5 nitrogen regulation protein NR(I) compare
AO353_29215 -0.7 -1.4 alpha/beta hydrolase compare
AO353_05325 -0.7 -2.2 GntR family transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium succinate dibasic hexahydrate across organisms