Experiment set1IT066 for Caulobacter crescentus NA1000

Compare to:

L-Isoleucine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03281 +11.6 81.0 AsnC-family transcriptional regulator compare
CCNA_01242 +3.5 28.1 amino acid permease compare
CCNA_00684 +1.5 7.1 anti-sigma factor, ChrR-family compare
CCNA_02250 +1.5 2.9 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_03944 +1.5 1.5 hypothetical protein compare
CCNA_01060 +1.5 5.6 type I protein secretion ATP-binding protein RsaD compare
CCNA_02037 +1.4 7.2 ATP-dependent endopeptidase Lon compare
CCNA_R0026 +1.4 2.6 tRNA-Gly compare
CCNA_01059 +1.4 11.1 S-layer protein rsaA compare
CCNA_00389 +1.3 2.0 aminomethyltransferase family protein compare
CCNA_02534 +1.3 2.1 hypothetical protein compare
CCNA_01583 +1.3 1.7 phosphate-binding protein compare
CCNA_03635 +1.3 1.4 hypothetical protein compare
CCNA_03609 +1.2 1.7 outer membrane protein compare
CCNA_01061 +1.2 4.2 type I secretion adaptor protein RsaE compare
CCNA_02892 +1.2 2.1 hypothetical protein compare
CCNA_00505 +1.2 6.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_03030 +1.2 5.0 cytochrome c2 compare
CCNA_02576 +1.1 4.6 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_01556 +1.1 2.2 LacI-family transcriptional regulator compare
CCNA_02132 +1.1 3.7 LacI-family transcriptional regulator compare
CCNA_01814 +1.1 7.6 nitrogen regulation protein ntrB compare
CCNA_02941 +1.1 2.9 transcription elongation factor greA compare
CCNA_01730 +1.1 7.0 amidophosphoribosyltransferase compare
CCNA_02376 +1.1 1.6 hypothetical protein compare
CCNA_03740 +1.1 7.0 cysteine synthase compare
CCNA_02133 +1.1 4.2 glucokinase compare
CCNA_00362 +1.1 2.8 zinc uptake regulation protein compare
CCNA_01037 +1.0 6.6 GntR-family transcriptional regulator compare
CCNA_02315 +1.0 2.9 Cro/CI-family transcriptional regulator compare
CCNA_01712 +1.0 6.5 CopY/TcrY family transcriptional repressor compare
CCNA_02026 +1.0 4.1 hypothetical protein compare
CCNA_02316 +1.0 6.3 hypothetical protein compare
CCNA_01815 +1.0 6.2 nitrogen assimilation regulatory protein NtrC compare
CCNA_03132 +1.0 3.9 transcriptional regulator, antitoxin protein higA compare
CCNA_R0037 +1.0 2.9 tRNA-Glu compare
CCNA_03514 +1.0 5.5 cytochrome c oxidase assembly protein ctaG compare
CCNA_02021 +1.0 4.1 hypothetical protein compare
CCNA_00264 +1.0 5.2 C4-dicarboxylate transport protein compare
CCNA_01939 +1.0 2.8 ADP-ribosylglycohydrolase compare
CCNA_01420 +1.0 4.1 NrdR family transcriptional regulator compare
CCNA_02270 +1.0 3.7 MarR-family transcriptional regulator compare
CCNA_02030 +0.9 2.7 hypothetical protein compare
CCNA_01220 +0.9 4.7 7-keto-8-aminopelargonate synthetase compare
CCNA_03952 +0.9 3.3 hypothetical protein compare
CCNA_01790 +0.9 4.0 protein translocase subunit secG compare
CCNA_00507 +0.9 3.3 cytochrome c1 compare
CCNA_02060 +0.9 2.3 CrcB family protein compare
CCNA_03861 +0.9 3.0 pyridoxal 5'-phosphate dependent enzyme class III compare
CCNA_02254 +0.9 2.9 isovaleryl-CoA dehydrogenase compare
CCNA_02252 +0.9 1.6 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_01780 +0.9 6.2 exopolyphosphatase compare
CCNA_02619 +0.9 6.7 stomatin/prohibitin-related protein compare
CCNA_03064 +0.9 3.5 PadR-family transcriptional regulator compare
CCNA_02419 +0.9 3.4 TonB1 protein compare
CCNA_01848 +0.9 4.9 quinol cytochrome oxidase polypeptide IV compare
CCNA_00872 +0.9 2.8 glutaredoxin compare
CCNA_01573 +0.9 5.8 ArsR-family transcriptional regulator compare
CCNA_03280 +0.9 7.9 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_03352 +0.9 4.2 YebC/PmpR transcriptional regulator compare
CCNA_00028 +0.9 1.6 TonB-dependent receptor compare
CCNA_00521 +0.9 1.2 antitoxin protein compare
CCNA_01851 +0.9 7.0 quinol cytochrome oxidase polypeptide II compare
CCNA_00506 +0.8 5.0 cytochrome b compare
CCNA_02970 +0.8 2.4 putative thiol-disulfide oxidoreductase compare
CCNA_02000 +0.8 1.1 SSU ribosomal protein S2P compare
CCNA_03705 +0.8 2.0 hypothetical protein compare
CCNA_01408 +0.8 2.8 phosphohydrolase, MutT/nudix family compare
CCNA_00769 +0.8 5.3 TetR family transcriptional regulator compare
CCNA_02126 +0.8 0.8 hypothetical protein compare
CCNA_01754 +0.8 1.8 transglycosylase associated protein compare
CCNA_02025 +0.8 3.9 hypothetical protein compare
CCNA_03056 +0.8 2.0 limonene-1,2-epoxide hydrolase compare
CCNA_00518 +0.8 2.6 LSU ribosomal protein L25P compare
CCNA_01444 +0.8 4.2 poly(3-hydroxyalkanoate) polymerase compare
CCNA_02012 +0.8 4.8 metal-dependent hydrolase compare
CCNA_01338 +0.8 4.1 glyoxalase family protein compare
CCNA_03824 +0.8 3.7 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_01276 +0.8 1.8 cytochrome c5 compare
CCNA_01195 +0.8 5.9 LacI-family transcriptional regulator compare
CCNA_03948 +0.8 1.4 hypothetical protein compare
CCNA_01811 +0.8 1.9 competence/damage-inducible protein CinA compare
CCNA_03643 +0.8 1.1 succinate dehydrogenase membrane anchor subunit compare
CCNA_01739 +0.8 3.7 LSU ribosomal protein L9P compare
CCNA_03782 +0.8 1.3 cytochrome c biogenesis ATP-binding export protein CcmA compare
CCNA_02525 +0.8 3.9 aspartate carbamoyltransferase compare
CCNA_03287 +0.8 4.2 PadR-family transcriptional regulator compare
CCNA_01836 +0.8 2.3 acyl-CoA thioesterase I/lysophospholipase compare
CCNA_01751 +0.8 3.5 aminodeoxychorismate lyase compare
CCNA_02591 +0.8 2.8 glutaredoxin compare
CCNA_02199 +0.8 5.7 methyltransferase compare
CCNA_01728 +0.8 4.6 short chain dehydrogenase compare
CCNA_02010 +0.8 1.7 hypothetical protein compare
CCNA_01608 +0.8 3.4 TetR-family transcriptional regulator compare
CCNA_03961 +0.8 2.6 hypothetical protein compare
CCNA_02042 +0.8 4.0 trigger factor chaperone compare
CCNA_01849 +0.8 4.9 quinol cytochrome oxidase polypeptide III compare
CCNA_00930 +0.8 5.3 riboflavin synthase alpha chain compare
CCNA_02075 +0.7 1.1 peptidoglycan binding endopeptidase DipM compare
CCNA_02103 +0.7 4.0 hypothetical protein compare
CCNA_02260 +0.7 1.6 hypothetical protein compare
CCNA_01850 +0.7 5.8 quinol cytochrome oxidase polypeptide I compare
CCNA_02617 +0.7 6.0 histidinol-phosphate aminotransferase compare
CCNA_03806 +0.7 5.0 outer membrane lipoprotein compare
CCNA_03882 +0.7 1.9 phage gp6-like head-tail connector protein compare
CCNA_02077 +0.7 2.2 5'(3')-nucleotidase/polyphosphatase SurE compare
CCNA_01840 +0.7 5.5 MerR-family transcriptional regulator compare
CCNA_03518 +0.7 5.6 cytochrome c oxidase polypeptide II coxB compare
CCNA_01655 +0.7 3.1 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_01593 +0.7 4.2 Xaa-pro aminopeptidase compare
CCNA_02448 +0.7 5.6 hypothetical protein compare
CCNA_01801 +0.7 3.1 hypothetical protein compare
CCNA_01923 +0.7 4.2 ATP-dependent RNA helicase compare
CCNA_00846 +0.7 6.2 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_02379 +0.7 4.1 hypothetical protein compare
CCNA_01690 +0.7 2.0 MAPEG family membrane protein compare
CCNA_00662 +0.7 3.4 hypothetical protein compare
CCNA_00756 +0.7 2.8 hypothetical protein compare
CCNA_02575 +0.7 2.9 hypothetical protein compare
CCNA_02447 +0.7 5.0 PspA/IM30 family regulatory protein compare
CCNA_01173 +0.7 3.7 chorismate mutase compare
CCNA_02729 +0.7 4.0 oligopeptide transporter compare
CCNA_00895 +0.7 1.8 hypothetical protein compare
CCNA_01116 +0.7 4.3 histidine protein kinase DivJ compare
CCNA_02878 +0.7 0.6 hypothetical protein compare
CCNA_01339 +0.7 3.4 ArsR-family transcriptional regulator compare
CCNA_03123 +0.7 3.9 ArsR-family transcriptional regulator compare
CCNA_01742 +0.7 3.4 hypothetical protein compare
CCNA_00459 +0.7 4.5 Na+/H+ antiporter nhaA compare
CCNA_03936 +0.7 2.3 hypothetical protein compare
CCNA_02737 +0.7 2.1 queuosine biosynthesis protein QueF compare
CCNA_02063 +0.7 2.3 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_00836 +0.7 2.7 flagellin FljO compare
CCNA_01813 +0.7 4.5 tRNA-dihydrouridine synthase compare
CCNA_03951 +0.7 2.2 hypothetical protein compare
CCNA_02942 +0.7 2.0 nucleoside-diphosphate-sugar epimerase compare
CCNA_02957 +0.7 1.9 ArsR-family transcriptional regulator compare
CCNA_03043 +0.7 2.5 type IV pilin protein pilA compare
CCNA_01174 +0.6 2.4 LysR-family transcriptional regulator compare
CCNA_01913 +0.6 3.8 MarR-family transcriptional regulator compare
CCNA_03808 +0.6 4.1 organic solvent resistance transport system Ttg2C protein compare
CCNA_00535 +0.6 1.2 hypothetical protein compare
CCNA_03214 +0.6 3.5 hypothetical protein compare
CCNA_01681 +0.6 2.2 RimI-like acetyltransferase compare
CCNA_02375 +0.6 1.2 hypothetical protein compare
CCNA_03954 +0.6 0.9 hypothetical protein compare
CCNA_01057 +0.6 4.7 hypothetical protein compare
CCNA_03513 +0.6 3.5 cytochrome c oxidase subunit III coxC compare
CCNA_02973 +0.6 2.5 antitoxin protein relB-3 compare
CCNA_01361 +0.6 1.4 PepSY superfamily protein compare
CCNA_00803 +0.6 3.9 chemotaxis protein cheW compare
CCNA_01375 +0.6 2.6 lactoylglutathione lyase compare
CCNA_03524 +0.6 2.4 di-/tripeptide transporter compare
CCNA_02171 +0.6 4.9 nucleoside permease nupC compare
CCNA_01086 +0.6 3.2 GTP-binding protein lepA compare
CCNA_01968 +0.6 2.2 pentapeptide repeats containing protein compare
CCNA_02367 +0.6 4.4 CelR-family transcriptional regulator compare
CCNA_01415 +0.6 4.6 methyltransferase compare
CCNA_00848 +0.6 1.3 leucine-responsive regulatory protein compare
CCNA_00705 +0.6 2.3 hypothetical protein compare
CCNA_03196 +0.6 2.5 hypothetical protein compare
CCNA_02475 +0.6 4.6 transcriptional regulator vanR compare
CCNA_01193 +0.6 4.7 amylosucrase compare
CCNA_00013 +0.6 4.7 protein-PII uridylyltransferase compare
CCNA_02854 +0.6 1.8 two-component response regulator compare
CCNA_02244 +0.6 4.1 aminotransferase class I family protein compare
CCNA_01668 +0.6 3.1 sulfate transport system permease protein cysT compare
CCNA_01804 +0.6 3.6 glutathione peroxidase compare
CCNA_01001 +0.6 2.8 ribokinase compare
CCNA_02910 +0.6 5.4 TonB-dependent receptor compare
CCNA_02434 +0.6 2.0 hypothetical protein compare
CCNA_03271 +0.6 4.9 methionine gamma-lyase compare
CCNA_00310 +0.6 3.4 3'-phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase family protein compare
CCNA_00931 +0.6 4.6 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_01186 +0.6 3.1 hypothetical protein compare
CCNA_02073 +0.6 2.9 cupin domain transcriptional regulator compare
CCNA_01684 +0.6 3.5 phenylalanine-4-hydroxylase compare
CCNA_02646 +0.6 1.0 cell division protein MraZ compare
CCNA_02805 +0.6 3.3 hypothetical protein compare
CCNA_03989 +0.6 4.5 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01931 +0.6 4.0 TetR-family transcriptional regulator compare
CCNA_02702 +0.6 3.9 xanthine dehydrogenase small subunit compare
CCNA_01619 +0.6 2.7 NYN domain protein compare
CCNA_02350 +0.6 2.0 dimeric ferredoxin-like protein compare
CCNA_00271 +0.6 1.6 hypothetical protein compare
CCNA_02241 +0.6 2.0 endoribonuclease L-PSP compare
CCNA_01445 +0.6 2.2 hypothetical protein compare
CCNA_02610 +0.6 2.0 glyoxalase family protein compare
CCNA_03106 +0.6 2.7 BolA protein compare
CCNA_03108 +0.6 4.9 TonB-dependent outer membrane receptor compare
CCNA_03964 +0.6 1.3 hypothetical protein compare
CCNA_00781 +0.6 4.7 two-component receiver protein CpdR compare
CCNA_01355 +0.6 2.6 transcriptional regulator IolR compare
CCNA_01102 +0.6 2.7 hypothetical protein compare
CCNA_02614 +0.6 3.0 fumarylacetoacetase superfamily protein compare
CCNA_01847 +0.6 4.2 cytochrome c oxidase assembly protein Surf1 compare
CCNA_01816 +0.6 3.6 nitrogen regulation protein ntrY compare
CCNA_03612 +0.6 2.6 HTH XRE-family transcriptional regulator compare
CCNA_01827 +0.6 3.1 cobyric acid synthase CobQ compare
CCNA_03517 +0.6 3.7 cytochrome c oxidase polypeptide I coxA compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in nitrogen source experiments

For nitrogen source L-Isoleucine across organisms