Experiment set1IT065 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_10670 -4.8 -6.6 shikimate dehydrogenase compare
AO353_07220 -4.0 -7.7 anthranilate synthase compare
AO353_14400 -4.0 -2.7 Fis family transcriptional regulator compare
AO353_20565 -3.9 -2.7 tRNA-Ala compare
AO353_00430 -3.8 -5.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07210 -3.7 -5.6 indole-3-glycerol-phosphate synthase compare
AO353_22800 -3.7 -4.3 sulfite reductase compare
AO353_09240 -3.6 -3.5 acetylglutamate kinase compare
AO353_20665 -3.6 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12520 -3.6 -12.2 glutamate synthase compare
AO353_20635 -3.5 -13.8 3-isopropylmalate dehydrogenase compare
AO353_05115 -3.5 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_14500 -3.4 -6.9 acetolactate synthase 3 regulatory subunit compare
AO353_13070 -3.4 -8.6 phosphoserine phosphatase compare
AO353_14505 -3.4 -13.1 ketol-acid reductoisomerase compare
AO353_10710 -3.4 -5.1 tryptophan synthase subunit beta compare
AO353_10030 -3.4 -10.5 pyruvate carboxylase subunit A compare
AO353_12515 -3.3 -20.5 glutamate synthase compare
AO353_12075 -3.3 -8.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07230 -3.3 -16.5 anthranilate synthase compare
AO353_12070 -3.3 -9.7 imidazoleglycerol-phosphate dehydratase compare
AO353_20695 -3.3 -6.9 O-succinylhomoserine sulfhydrylase compare
AO353_12365 -3.3 -5.0 phosphoribosyl-AMP cyclohydrolase compare
AO353_12500 -3.3 -2.2 shikimate kinase compare
AO353_13165 -3.2 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12085 -3.2 -8.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_08345 -3.2 -10.0 dihydroxy-acid dehydratase compare
AO353_08180 -3.2 -13.5 homoserine O-acetyltransferase compare
AO353_09000 -3.1 -6.3 argininosuccinate lyase compare
AO353_14495 -3.1 -11.9 acetolactate synthase 3 catalytic subunit compare
AO353_20620 -3.1 -7.0 isopropylmalate isomerase compare
AO353_21625 -3.0 -3.6 Fe/S biogenesis protein NfuA compare
AO353_15925 -3.0 -13.8 2-isopropylmalate synthase compare
AO353_08185 -3.0 -10.8 methionine biosynthesis protein MetW compare
AO353_10025 -3.0 -15.2 pyruvate carboxylase subunit B compare
AO353_08475 -3.0 -9.8 phosphoserine phosphatase compare
AO353_02070 -3.0 -8.2 prephenate dehydratase compare
AO353_02075 -3.0 -12.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_19060 -2.9 -5.5 CysB family transcriptional regulator compare
AO353_05110 -2.9 -11.3 histidinol dehydrogenase compare
AO353_08685 -2.9 -9.3 N-acetylglutamate synthase compare
AO353_10035 -2.8 -8.9 LysR family transcriptional regulator compare
AO353_04355 -2.8 -2.7 homoserine dehydrogenase compare
AO353_07215 -2.8 -8.0 anthranilate phosphoribosyltransferase compare
AO353_04105 -2.8 -9.7 argininosuccinate synthase compare
AO353_14595 -2.8 -10.1 carbonate dehydratase compare
AO353_08510 -2.8 -6.1 3-phosphoglycerate dehydrogenase compare
AO353_04155 -2.7 -12.6 ornithine carbamoyltransferase compare
AO353_20625 -2.7 -5.0 3-isopropylmalate dehydratase compare
AO353_07155 -2.6 -8.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12115 -2.5 -3.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_11775 -2.5 -8.5 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_08015 -2.5 -7.7 5,10-methylenetetrahydrofolate reductase compare
AO353_07525 -2.4 -13.5 biotin synthase compare
AO353_07505 -2.4 -9.3 dethiobiotin synthetase compare
AO353_10705 -2.4 -5.3 tryptophan synthase subunit alpha compare
AO353_25255 -2.4 -7.7 large subunit of pyruvate transporter (CstA) (from data) conserved
AO353_10725 -2.4 -2.0 dodecin flavoprotein compare
AO353_05105 -2.4 -10.9 histidinol-phosphate aminotransferase compare
AO353_25245 -2.4 -8.0 regulator conserved
AO353_12360 -2.4 -9.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_03020 -2.3 -8.3 arginine N-succinyltransferase compare
AO353_00355 -2.2 -3.5 transcriptional regulator compare
AO353_14115 -2.1 -6.7 gamma-glutamyl kinase compare
AO353_07510 -2.1 -9.4 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_08165 -2.0 -3.3 pyrroline-5-carboxylate reductase compare
AO353_14370 -2.0 -7.0 glucose-6-phosphate isomerase compare
AO353_08045 -2.0 -12.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_07520 -1.9 -10.9 8-amino-7-oxononanoate synthase compare
AO353_16940 -1.9 -5.9 deoxycytidine triphosphate deaminase compare
AO353_06495 -1.9 -4.3 gamma-glutamyl phosphate reductase compare
AO353_04175 -1.8 -5.1 glycerol uptake facilitator GlpF compare
AO353_00825 -1.8 -4.3 porin compare
AO353_08485 -1.8 -11.7 threonine dehydratase compare
AO353_08780 -1.8 -6.2 5-formyltetrahydrofolate cyclo-ligase compare
AO353_02720 -1.8 -5.7 cysteine synthase compare
AO353_14150 -1.7 -2.3 peptidylprolyl isomerase compare
AO353_00650 -1.7 -3.0 cytochrome biogenesis protein compare
AO353_15185 -1.7 -5.3 ATPase compare
AO353_27650 -1.7 -4.7 cell division protein FtsK compare
AO353_03015 -1.7 -4.6 arginine N-succinyltransferase compare
AO353_27000 -1.7 -2.2 hypothetical protein compare
AO353_20540 -1.7 -6.2 aromatic amino acid aminotransferase compare
AO353_04565 -1.6 -5.5 nucleoid-associated protein compare
AO353_06320 -1.6 -4.5 AsnC family transcriptional regulator compare
AO353_11165 -1.6 -8.4 hypothetical protein compare
AO353_10780 -1.6 -1.6 DNA-binding protein compare
AO353_02975 -1.6 -2.9 aspartate kinase compare
AO353_00515 -1.5 -3.3 hypothetical protein compare
AO353_00310 -1.5 -7.7 transaldolase compare
AO353_12090 -1.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_00605 -1.5 -5.8 cytochrome C oxidase Cbb3 compare
AO353_15250 -1.4 -3.2 cytochrome B compare
AO353_09285 -1.4 -7.2 reactive intermediate/imine deaminase compare
AO353_07075 -1.4 -4.0 elongation factor Tu compare
AO353_03615 -1.4 -3.4 cold-shock protein compare
AO353_02270 -1.4 -3.5 isochorismatase compare
AO353_16805 -1.4 -5.2 recombinase RecA compare
AO353_13640 -1.4 -3.9 histidine kinase compare
AO353_02550 -1.4 -4.0 TetR family transcriptional regulator compare
AO353_15490 -1.3 -2.0 hypothetical protein compare
AO353_22195 -1.3 -2.6 metal ABC transporter permease compare
AO353_13100 -1.3 -1.8 GTPase RsgA compare
AO353_06040 -1.3 -3.3 exodeoxyribonuclease V subunit alpha compare
AO353_03365 -1.3 -6.1 transcriptional regulator compare
AO353_14485 -1.3 -1.1 pseudouridine synthase compare
AO353_22500 -1.3 -1.5 hypothetical protein compare
AO353_25250 -1.3 -5.6 histidine kinase conserved
AO353_04055 -1.3 -1.9 methionine--tRNA ligase compare
AO353_07645 -1.3 -1.2 sarcosine oxidase subunit gamma compare
AO353_23880 -1.3 -3.9 ATPase compare
AO353_00620 -1.2 -2.4 cytochrome C oxidase Cbb3 compare
AO353_28945 -1.2 -2.2 potassium-transporting ATPase subunit B compare
AO353_13140 -1.2 -4.5 tRNA dimethylallyltransferase compare
AO353_26050 -1.2 -2.1 hypothetical protein compare
AO353_03580 -1.2 -2.8 ATP-dependent DNA helicase RuvB compare
AO353_03060 -1.2 -9.9 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) compare
AO353_00490 -1.2 -1.9 PasA protein compare
AO353_07355 -1.2 -4.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_06045 -1.2 -5.6 exodeoxyribonuclease V subunit beta compare
AO353_05690 -1.2 -2.8 SsrA-binding protein compare
AO353_08265 -1.2 -4.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_02685 -1.2 -2.9 phosphoribosylglycinamide formyltransferase compare
AO353_01035 -1.1 -2.9 hypothetical protein compare
AO353_18540 -1.1 -2.4 pseudouridine synthase compare
AO353_07685 -1.1 -2.3 hypothetical protein compare
AO353_02060 -1.1 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_03025 -1.1 -4.2 acetylornithine aminotransferase compare
AO353_18980 -1.1 -3.3 DoxX family protein compare
AO353_02555 -1.1 -7.2 histidine kinase compare
AO353_15445 -1.1 -2.8 disulfide bond formation protein B compare
AO353_16440 -1.1 -2.3 ArsC family transcriptional regulator compare
AO353_02040 -1.1 -1.8 integration host factor subunit beta compare
AO353_07515 -1.1 -1.3 transporter compare
AO353_08120 -1.0 -2.9 hypothetical protein compare
AO353_03795 -1.0 -3.2 fumarate hydratase compare
AO353_11770 -1.0 -1.5 molecular chaperone Hsp33 compare
AO353_12420 -1.0 -2.6 predicted FeS cluster maintenance protein (from data) compare
AO353_05080 -1.0 -6.3 sulfate adenylyltransferase compare
AO353_01685 -1.0 -1.8 hypothetical protein compare
AO353_02280 -1.0 -1.3 DNA mismatch repair protein MutS compare
AO353_13985 -1.0 -2.7 pilus assembly protein compare
AO353_01780 -1.0 -6.1 heat-shock protein Hsp90 compare
AO353_05420 -1.0 -1.0 peptide chain release factor 3 compare
AO353_28425 -1.0 -2.7 TetR family transcriptional regulator compare
AO353_07315 -1.0 -1.6 rRNA methyltransferase compare
AO353_08640 -1.0 -2.5 hypothetical protein compare
AO353_09050 -1.0 -2.4 recombinase XerC compare
AO353_05075 -1.0 -5.7 adenylylsulfate kinase compare
AO353_16835 -1.0 -1.9 LuxR family transcriptional regulator compare
AO353_14405 -1.0 -5.6 ATPase compare
AO353_09040 -1.0 -1.4 diaminopimelate epimerase compare
AO353_14940 -1.0 -2.1 malate:quinone oxidoreductase compare
AO353_12080 -1.0 -2.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_14930 -0.9 -2.5 GntR family transcriptional regulator compare
AO353_06455 -0.9 -1.6 D-alanyl-D-alanine carboxypeptidase compare
AO353_11530 -0.9 -4.6 diguanylate cyclase compare
AO353_25260 -0.9 -2.0 hypothetical protein compare
AO353_03590 -0.9 -2.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_16710 -0.9 -2.2 hypothetical protein compare
AO353_24985 -0.9 -2.4 L-seryl-tRNA(Sec) selenium transferase compare
AO353_16210 -0.9 -5.9 XRE family transcriptional regulator compare
AO353_19070 -0.9 -2.4 hypothetical protein compare
AO353_23510 -0.9 -2.1 transcriptional regulator compare
AO353_10945 -0.9 -1.9 cytochrome C compare
AO353_24760 -0.9 -2.5 glutamine amidotransferase compare
AO353_13610 -0.9 -2.1 precorrin isomerase compare
AO353_10915 -0.8 -5.5 ABC transporter substrate-binding protein compare
AO353_10455 -0.8 -1.1 tRNA modification GTPase MnmE compare
AO353_09345 -0.8 -1.2 hypothetical protein compare
AO353_08505 -0.8 -5.3 FAD-linked oxidase compare
AO353_16070 -0.8 -2.7 PadR family transcriptional regulator compare
AO353_24700 -0.8 -2.5 peptidase compare
AO353_10905 -0.8 -4.4 zinc ABC transporter ATP-binding protein compare
AO353_12790 -0.8 -1.0 hypothetical protein compare
AO353_05125 -0.8 -3.1 BolA family transcriptional regulator compare
AO353_24340 -0.8 -1.4 TetR family transcriptional regulator compare
AO353_25335 -0.8 -1.5 malonate decarboxylase acyl carrier protein compare
AO353_09115 -0.8 -4.3 diguanylate cyclase compare
AO353_26400 -0.8 -2.2 hypothetical protein compare
AO353_21615 -0.8 -5.4 methionine synthase compare
AO353_09135 -0.8 -1.2 cytochrome C compare
AO353_26045 -0.8 -1.3 hypothetical protein compare
AO353_17205 -0.8 -2.1 beta-ketoadipyl CoA thiolase compare
AO353_01870 -0.8 -4.0 hypothetical protein conserved
AO353_23925 -0.8 -3.0 histidine kinase compare
AO353_08100 -0.8 -1.4 chemotaxis protein CheY compare
AO353_23730 -0.8 -1.5 hypothetical protein compare
AO353_18410 -0.8 -2.8 hypothetical protein compare
AO353_10510 -0.8 -1.2 benzoate transporter compare
AO353_00345 -0.8 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO353_12990 -0.8 -2.4 multidrug DMT transporter compare
AO353_03300 -0.8 -2.1 hypothetical protein compare
AO353_13605 -0.8 -4.5 oxidoreductase compare
AO353_28860 -0.8 -2.6 hypothetical protein compare
AO353_02515 -0.8 -3.6 recombination-associated protein RdgC compare
AO353_04930 -0.8 -1.9 flavodoxin compare
AO353_27725 -0.7 -1.9 GNAT family acetyltransferase compare
AO353_18325 -0.7 -1.6 hypothetical protein compare
AO353_00630 -0.7 -3.0 (Fe-S)-binding protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium pyruvate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium pyruvate across organisms