Experiment set1IT065 for Acidovorax sp. GW101-3H11

Compare to:

D-Galactose carbon source

200 most detrimental genes:

  gene name fitness t score description  
Ac3H11_3699 +1.7 2.8 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Ac3H11_4957 +1.6 4.1 hypothetical protein compare
Ac3H11_3270 +1.2 2.8 Putative translation initiation inhibitor, yjgF family compare
Ac3H11_1190 +1.2 1.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Ac3H11_3590 +1.2 1.9 Carbon monoxide dehydrogenase small chain (EC 1.2.99.2) compare
Ac3H11_3378 +1.1 1.6 chromosome replication initiation inhibitor protein compare
Ac3H11_916 +1.1 1.5 RNA polymerase sigma-70 factor compare
Ac3H11_3254 +1.1 1.2 hypothetical protein compare
Ac3H11_2583 +1.1 1.0 Na(+) H(+) antiporter subunit C compare
Ac3H11_747 +1.1 3.7 RNA polymerase signa E (sigma 24) compare
Ac3H11_3693 +1.1 1.3 Urease gamma subunit (EC 3.5.1.5) compare
Ac3H11_2801 +1.0 1.3 FIG003465: Conjugative transfer outer membrane protein compare
Ac3H11_653 +1.0 1.5 hypothetical protein compare
Ac3H11_1583 +1.0 2.6 COG1399 protein, clustered with ribosomal protein L32p compare
Ac3H11_1180 +1.0 1.3 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Ac3H11_4312 +0.9 1.6 ABC-type dipeptide transport system, periplasmic component compare
Ac3H11_2274 +0.9 1.6 Methylmalonyl-CoA epimerase (EC 5.1.99.1) compare
Ac3H11_4214 +0.9 1.7 Copper tolerance protein compare
Ac3H11_4241 +0.9 1.7 hypothetical protein compare
Ac3H11_4204 +0.9 1.3 hypothetical protein compare
Ac3H11_784 +0.9 2.5 Hydrogen peroxide-inducible genes activator compare
Ac3H11_3613 +0.9 1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Ac3H11_3052 +0.9 1.8 FIG00761799: membrane protein compare
Ac3H11_4438 +0.9 1.9 hypothetical protein compare
Ac3H11_1621 +0.8 3.0 FIG111991: hypothetical protein compare
Ac3H11_1174 +0.8 1.7 Transcriptional regulator, GntR family compare
Ac3H11_2519 +0.8 2.0 hypothetical protein compare
Ac3H11_1205 +0.8 3.6 Two-component response regulator compare
Ac3H11_4864 +0.8 1.6 hypothetical protein compare
Ac3H11_2713 +0.8 1.2 Tricarboxylate transport protein TctC compare
Ac3H11_888 +0.8 1.7 hypothetical protein compare
Ac3H11_129 +0.8 1.8 hypothetical protein compare
Ac3H11_3771 +0.8 2.0 hypothetical protein compare
Ac3H11_2219 +0.8 0.9 Type I secretion outer membrane protein, TolC precursor compare
Ac3H11_1626 +0.8 2.8 hypothetical protein compare
Ac3H11_4858 +0.8 1.6 Septum site-determining protein MinD compare
Ac3H11_619 +0.8 1.4 hypothetical protein compare
Ac3H11_1904 +0.8 0.8 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) compare
Ac3H11_3088 +0.8 2.1 hypothetical protein compare
Ac3H11_4203 +0.7 2.1 Ferredoxin compare
Ac3H11_3238 +0.7 1.0 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Ac3H11_1660 +0.7 1.0 ATP-dependent DNA helicase UvrD/PcrA compare
Ac3H11_1042 +0.7 1.7 Probable integral membrane protein compare
Ac3H11_1473 +0.7 2.7 hypothetical protein compare
Ac3H11_4618 +0.7 1.8 Mercuric transport protein, MerE compare
Ac3H11_657 +0.7 1.2 Sensory histidine kinase QseC compare
Ac3H11_3230 +0.7 2.4 Gluconate utilization system Gnt-I transcriptional repressor compare
Ac3H11_336 +0.7 1.4 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) compare
Ac3H11_4648 +0.7 1.6 DNA-binding response regulator compare
Ac3H11_883 +0.7 1.2 Cys regulon transcriptional activator CysB compare
Ac3H11_1007 +0.7 2.0 Hydantoin racemase (EC 5.1.99.-) compare
Ac3H11_833 +0.7 1.3 2-keto-4-pentenoate hydratase (EC 4.2.1.80) compare
Ac3H11_3588 +0.7 1.2 hypothetical protein compare
Ac3H11_2546 +0.7 2.7 Benzoate transport, ATP binding protein compare
Ac3H11_3911 +0.7 1.1 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in phylloquinone biosynthesis compare
Ac3H11_225 +0.7 1.5 Cobalt-zinc-cadmium resistance protein czcI precursor compare
Ac3H11_901 +0.7 1.7 Beta-lactamase (EC 3.5.2.6) compare
Ac3H11_4725 +0.6 1.0 hypothetical protein compare
Ac3H11_3724 +0.6 1.8 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
Ac3H11_2934 +0.6 2.2 D-2-hydroxyglutarate dehydrogenase compare
Ac3H11_3111 +0.6 1.1 hypothetical protein compare
Ac3H11_4131 +0.6 3.6 D-serine dehydratase transcriptional activator compare
Ac3H11_3431 +0.6 1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Ac3H11_3626 +0.6 1.9 Probable lipoprotein signal peptide compare
Ac3H11_4150 +0.6 2.6 diguanylate cyclase compare
Ac3H11_656 +0.6 2.6 Two-component system response regulator QseB compare
Ac3H11_173 +0.6 3.5 Related to two-component system sensory/regulatory protein compare
Ac3H11_2863 +0.6 2.2 membrane protein, putative compare
Ac3H11_4274 +0.6 2.6 RNA-binding protein compare
Ac3H11_1027 +0.6 0.8 FIG01198047: hypothetical protein compare
Ac3H11_3500 +0.6 1.0 hypothetical protein compare
Ac3H11_2661 +0.6 0.9 hypothetical protein compare
Ac3H11_3231 +0.6 1.2 hypothetical protein compare
Ac3H11_991 +0.6 1.7 hypothetical transporter PduT for various metalloporphyrins compare
Ac3H11_2349 +0.6 2.7 Transcriptional regulator, MarR family compare
Ac3H11_3758 +0.6 1.9 hypothetical protein compare
Ac3H11_635 +0.6 1.5 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare
Ac3H11_1819 +0.6 1.9 FolM Alternative dihydrofolate reductase 1 compare
Ac3H11_4088 +0.6 1.2 hypothetical protein compare
Ac3H11_2562 +0.6 2.2 ABC transporter for L-Histidine, periplasmic substrate-binding component 2 (from data) compare
Ac3H11_4174 +0.6 2.9 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Ac3H11_3982 +0.6 0.9 hypothetical protein compare
Ac3H11_2047 +0.6 1.9 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) compare
Ac3H11_2990 +0.6 1.6 Phenylacetic acid degradation protein PaaD, thioesterase compare
Ac3H11_4173 +0.6 1.4 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster compare
Ac3H11_162 +0.6 0.7 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Ac3H11_1275 +0.6 0.6 hypothetical protein compare
Ac3H11_4321 +0.6 1.2 hypothetical protein compare
Ac3H11_1538 +0.6 1.6 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Ac3H11_2177 +0.6 2.7 Sensory histidine kinase QseC compare
Ac3H11_4427 +0.6 2.8 Probable transmembrane protein compare
Ac3H11_2772 +0.6 2.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Ac3H11_1609 +0.5 2.3 Transcriptional regulator, IclR family compare
Ac3H11_3935 +0.5 2.1 FIG006163: hypothetical protein compare
Ac3H11_4423 +0.5 4.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) compare
Ac3H11_4132 +0.5 3.0 Transcriptional regulator, LysR family compare
Ac3H11_4567 +0.5 3.0 hypothetical protein compare
Ac3H11_3397 +0.5 2.0 Conserved domain protein compare
Ac3H11_2182 +0.5 2.5 FIG00443816: hypothetical protein compare
Ac3H11_3571 +0.5 2.0 ABC-type tungstate transport system, permease protein compare
Ac3H11_3836 +0.5 1.7 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) / Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Ac3H11_3606 +0.5 0.9 Mlr1171 protein compare
Ac3H11_841 +0.5 0.7 hypothetical protein compare
Ac3H11_4137 +0.5 1.7 Probable chromate transporter protein compare
Ac3H11_4090 +0.5 1.7 Filamentation induced by cAMP protein Fic compare
Ac3H11_1268 +0.5 0.7 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
Ac3H11_2806 +0.5 1.3 IncF plasmid conjugative transfer pilus assembly protein TraB compare
Ac3H11_2798 +0.5 1.4 hypothetical protein compare
Ac3H11_1297 +0.5 2.0 Transcriptional regulator, DeoR family compare
Ac3H11_2302 +0.5 0.8 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Ac3H11_96 +0.5 1.5 hypothetical protein compare
Ac3H11_982 +0.5 1.4 FIG00348939: hypothetical protein compare
Ac3H11_2515 +0.5 1.4 ElaA protein compare
Ac3H11_1728 +0.5 1.9 hypothetical protein compare
Ac3H11_1383 +0.5 3.3 Flagellar biosynthesis protein FlhF compare
Ac3H11_4437 +0.5 3.6 GCN5-related N-acetyltransferase compare
Ac3H11_2211 +0.5 1.2 hypothetical protein compare
Ac3H11_95 +0.5 1.8 transcriptional regulator, AraC family compare
Ac3H11_4370 +0.5 2.3 FIG00786362: hypothetical protein compare
Ac3H11_108 +0.5 1.1 Hydrolase compare
Ac3H11_4878 +0.5 1.7 hypothetical protein compare
Ac3H11_3628 +0.5 1.3 putative transmembrane protein compare
Ac3H11_2199 +0.5 2.1 hypothetical protein compare
Ac3H11_4980 +0.5 2.2 Cu(I)-responsive transcriptional regulator compare
Ac3H11_4226 +0.5 2.4 tRNA-Val-CAC compare
Ac3H11_403 +0.5 1.8 Transporter compare
Ac3H11_3974 +0.5 1.8 Protein of unknown function DUF1282 compare
Ac3H11_1482 +0.5 2.3 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
Ac3H11_2937 +0.5 2.1 Xylulose kinase (EC 2.7.1.17) compare
Ac3H11_2185 +0.5 1.2 hypothetical secreted protein compare
Ac3H11_2212 +0.5 2.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
Ac3H11_220 +0.5 1.5 hypothetical protein compare
Ac3H11_3305 +0.5 0.8 hypothetical protein compare
Ac3H11_4538 +0.5 2.0 ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8) compare
Ac3H11_592 +0.5 1.0 hypothetical protein compare
Ac3H11_1317 +0.5 1.7 Permeases of the major facilitator superfamily compare
Ac3H11_1119 +0.5 1.2 hypothetical protein compare
Ac3H11_229 +0.5 1.5 Hemin transport protein HmuS compare
Ac3H11_4134 +0.5 2.4 hypothetical protein; putative signal peptide compare
Ac3H11_2170 +0.5 0.7 Methionine ABC transporter ATP-binding protein compare
Ac3H11_2509 +0.5 0.7 Response regulator compare
Ac3H11_4440 +0.5 1.4 FIG004694: Hypothetical protein compare
Ac3H11_3706 +0.5 2.5 Urea ABC transporter, ATPase protein UrtE compare
Ac3H11_196 +0.5 1.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Ac3H11_3608 +0.5 1.5 hypothetical protein compare
Ac3H11_1976 +0.5 1.1 RNA 3'-terminal phosphate cyclase (EC 6.5.1.4) compare
Ac3H11_68 +0.5 1.4 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
Ac3H11_2818 +0.5 1.5 IncF plasmid conjugative transfer pilus assembly protein TraF compare
Ac3H11_1649 +0.4 1.0 hypothetical protein compare
Ac3H11_4467 +0.4 0.5 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Ac3H11_141 +0.4 2.4 Tricarboxylate transport protein TctC compare
Ac3H11_3223 +0.4 1.3 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Ac3H11_4217 +0.4 1.4 hypothetical protein compare
Ac3H11_470 +0.4 1.6 NAD(FAD)-utilizing dehydrogenases compare
Ac3H11_2566 +0.4 1.0 hypothetical protein compare
Ac3H11_1283 +0.4 0.8 Malic enzyme compare
Ac3H11_89 +0.4 1.1 hypothetical protein compare
Ac3H11_4179 +0.4 2.0 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) compare
Ac3H11_4915 +0.4 2.2 (AF179595) Vco33 compare
Ac3H11_239 +0.4 1.7 hypothetical protein compare
Ac3H11_63 +0.4 1.3 Sigma-54 dependent transcriptional regulator compare
Ac3H11_4533 +0.4 1.4 hypothetical protein compare
Ac3H11_4186 +0.4 2.2 putative membrane protein compare
Ac3H11_3057 +0.4 0.7 hypothetical protein compare
Ac3H11_3653 +0.4 1.4 hypothetical protein compare
Ac3H11_2207 +0.4 1.9 Chromate resistance protein ChrB compare
Ac3H11_339 +0.4 2.2 Transcriptional regulator, PadR family compare
Ac3H11_4192 +0.4 1.8 hypothetical protein compare
Ac3H11_3073 +0.4 2.5 FMN-dependent NADH-azoreductase compare
Ac3H11_3115 +0.4 2.0 putative membrane protein compare
Ac3H11_2183 +0.4 1.4 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Ac3H11_4130 +0.4 2.5 D-serine dehydratase (EC 4.3.1.18) compare
Ac3H11_752 +0.4 1.4 bll5259; hypothetical protein compare
Ac3H11_4388 +0.4 1.9 Esterase/lipase-like compare
Ac3H11_1842 +0.4 2.2 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Ac3H11_4368 +0.4 2.1 Outer membrane protein (porin) compare
Ac3H11_3389 +0.4 2.5 inner membrane protein compare
Ac3H11_1629 +0.4 1.3 FIG00901576: hypothetical protein compare
Ac3H11_2178 +0.4 1.2 Two-component system response regulator QseB compare
Ac3H11_2656 +0.4 0.8 UBA/THIF-type NAD/FAD binding fold compare
Ac3H11_1335 +0.4 1.3 hypothetical protein compare
Ac3H11_4790 +0.4 1.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Ac3H11_2535 +0.4 2.0 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Ac3H11_3765 +0.4 0.8 Transcriptional regulator, IclR family compare
Ac3H11_2979 +0.4 1.3 tRNA-Undet-??? compare
Ac3H11_2814 +0.4 2.0 IncF plasmid conjugative transfer pilus assembly protein TraU compare
Ac3H11_1497 +0.4 1.7 Choline dehydrogenase (EC 1.1.99.1) compare
Ac3H11_4209 +0.4 2.7 Heavy metal sensor histidine kinase compare
Ac3H11_4428 +0.4 2.7 Molybdopterin-binding protein compare
Ac3H11_1926 +0.4 1.6 Isohexenylglutaconyl-CoA hydratase compare
Ac3H11_47 +0.4 1.0 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Ac3H11_320 +0.4 0.6 AttE component of AttEFGH ABC transport system compare
Ac3H11_4789 +0.4 2.0 hypothetical protein compare
Ac3H11_1355 +0.4 2.0 Phenazine biosynthesis protein PhzF like compare
Ac3H11_3120 +0.4 1.8 hypothetical protein compare
Ac3H11_4184 +0.4 2.4 Aldehyde dehydrogenase B (EC 1.2.1.22) compare
Ac3H11_4544 +0.4 2.0 PhnJ protein compare
Ac3H11_3102 +0.4 1.2 Lipoprotein, putative compare
Ac3H11_3782 +0.4 1.5 hypothetical protein compare
Ac3H11_1357 +0.4 1.3 Uncharacterized glutathione S-transferase-like protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Galactose in Acidovorax sp. GW101-3H11

For carbon source D-Galactose across organisms