Experiment set1IT065 for Pantoea sp. MT58

Compare to:

Nickel (II) chloride hexahydrate 40 uM, aerobic

200 most important genes:

  gene name fitness t score description  
IAI47_00760 -6.5 -4.5 envelope stress response regulator transcription factor CpxR compare
IAI47_04895 -6.1 -4.2 pyridoxine 5'-phosphate synthase compare
IAI47_16350 -6.0 -7.2 phosphoserine phosphatase compare
IAI47_17220 -5.9 -26.6 glutamate synthase large subunit compare
IAI47_17225 -5.9 -20.6 sulfite reductase subunit alpha compare
IAI47_07070 -5.6 -8.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_04190 -5.4 -10.3 adenylyl-sulfate kinase compare
IAI47_01030 -5.4 -20.3 branched-chain amino acid transaminase compare
IAI47_07085 -5.2 -17.1 histidinol-phosphate transaminase compare
IAI47_03975 -5.2 -18.6 amino-acid N-acetyltransferase compare
IAI47_03725 -5.2 -12.9 phosphoglycerate dehydrogenase compare
IAI47_00905 -5.2 -18.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_07075 -5.2 -11.0 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_01050 -5.2 -21.3 ketol-acid reductoisomerase compare
IAI47_00895 -5.2 -23.9 phosphoenolpyruvate carboxylase compare
IAI47_07090 -5.1 -13.6 histidinol dehydrogenase compare
IAI47_18040 -5.1 -22.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_00915 -5.0 -21.4 argininosuccinate synthase compare
IAI47_16210 -5.0 -17.4 homoserine kinase compare
IAI47_09180 -5.0 -13.3 anthranilate phosphoribosyltransferase compare
IAI47_10520 -5.0 -3.4 pyridoxamine 5'-phosphate oxidase compare
IAI47_07065 -5.0 -14.6 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_16015 -4.9 -8.2 3-isopropylmalate dehydratase small subunit compare
IAI47_12865 -4.9 -9.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_07060 -4.9 -14.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_16205 -4.8 -12.1 threonine synthase compare
IAI47_00910 -4.8 -14.5 acetylglutamate kinase compare
IAI47_06235 -4.8 -10.7 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_16120 -4.8 -15.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_09040 -4.8 -3.6 NAD-dependent epimerase compare
IAI47_13900 -4.7 -19.9 asparagine synthase B compare
IAI47_07080 -4.7 -12.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_16215 -4.7 -22.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_00920 -4.6 -21.0 argininosuccinate lyase compare
IAI47_09175 -4.6 -15.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_16080 -4.6 -12.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_15115 -4.6 -11.0 glutamate-5-semialdehyde dehydrogenase compare
IAI47_16005 -4.5 -15.6 3-isopropylmalate dehydrogenase compare
IAI47_04150 -4.5 -18.5 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_07165 -4.5 -3.1 exodeoxyribonuclease I compare
IAI47_07095 -4.5 -13.7 ATP phosphoribosyltransferase compare
IAI47_16115 -4.5 -25.8 carbamoyl-phosphate synthase large subunit compare
IAI47_05180 -4.5 -18.1 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_06275 -4.5 -22.9 amidophosphoribosyltransferase compare
IAI47_15635 -4.5 -5.3 RNA polymerase-binding protein DksA compare
IAI47_01035 -4.4 -23.5 dihydroxy-acid dehydratase compare
IAI47_04155 -4.3 -18.5 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_18015 -4.3 -18.5 homoserine O-succinyltransferase compare
IAI47_13770 -4.3 -13.2 citrate synthase compare
IAI47_13690 -4.3 -1.8 cell envelope integrity protein TolA compare
IAI47_17185 -4.3 -3.0 RNA polymerase factor sigma-54 compare
IAI47_08085 -4.3 -9.8 helix-turn-helix domain-containing protein compare
IAI47_16010 -4.2 -19.9 3-isopropylmalate dehydratase large subunit compare
IAI47_12215 -4.2 -17.1 dihydroorotase compare
IAI47_13740 -4.1 -2.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_00600 -4.1 -15.4 orotate phosphoribosyltransferase compare
IAI47_12705 -4.1 -16.7 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_13745 -4.1 -4.0 2-oxoglutarate dehydrogenase E1 component compare
IAI47_09165 -4.1 -11.4 tryptophan synthase subunit alpha compare
IAI47_09170 -4.0 -15.6 tryptophan synthase subunit beta compare
IAI47_14350 -4.0 -10.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_04930 -4.0 -24.4 phosphoribosylformylglycinamidine synthase compare
IAI47_09275 -4.0 -13.1 orotidine-5'-phosphate decarboxylase compare
IAI47_15810 -4.0 -3.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_15120 -4.0 -8.9 glutamate 5-kinase compare
IAI47_00900 -4.0 -15.2 acetylornithine deacetylase compare
IAI47_00880 -4.0 -18.6 cystathionine gamma-synthase compare
IAI47_01040 -3.9 -11.7 threonine ammonia-lyase, biosynthetic compare
IAI47_16830 -3.9 -18.7 ornithine carbamoyltransferase compare
IAI47_13180 -3.8 -9.6 manganese-binding transcriptional regulator MntR compare
IAI47_14355 -3.8 -14.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_05275 -3.8 -7.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_16860 -3.8 -18.3 aspartate carbamoyltransferase compare
IAI47_00780 -3.8 -6.3 6-phosphofructokinase compare
IAI47_00455 -3.7 -15.2 nitrogen regulation protein NR(II) compare
IAI47_09190 -3.7 -15.9 anthranilate synthase component 1 compare
IAI47_09235 -3.7 -3.5 type I DNA topoisomerase compare
IAI47_18045 -3.7 -14.6 phosphoribosylamine--glycine ligase compare
IAI47_04175 -3.6 -16.0 uroporphyrinogen-III C-methyltransferase compare
IAI47_03860 -3.6 -13.9 diaminopimelate decarboxylase compare
IAI47_14945 -3.6 -5.4 pyrroline-5-carboxylate reductase compare
IAI47_00655 -3.5 -5.4 glycosyltransferase family 4 protein compare
IAI47_04185 -3.5 -19.6 sulfate adenylyltransferase subunit CysN compare
IAI47_16000 -3.5 -17.3 2-isopropylmalate synthase compare
IAI47_02695 -3.4 -15.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_04410 -3.4 -15.1 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_12645 -3.4 -7.4 porin OmpA compare
IAI47_09240 -3.3 -2.3 HTH-type transcriptional regulator CysB compare
IAI47_05390 -3.2 -9.2 sulfate/thiosulfate ABC transporter permease CysT compare
IAI47_13685 -3.2 -3.7 Tol-Pal system protein TolB compare
IAI47_04180 -3.1 -13.1 sulfate adenylyltransferase subunit CysD compare
IAI47_00450 -3.1 -12.6 nitrogen regulation protein NR(I) compare
IAI47_09185 -3.1 -7.5 glutamine amidotransferase compare
IAI47_04160 -2.7 -12.8 phosphoadenylyl-sulfate reductase compare
IAI47_00460 -2.7 -1.9 glutamate--ammonia ligase compare
IAI47_06940 -2.7 -1.6 tyrosine-protein kinase Wzc compare
IAI47_05400 -2.7 -8.9 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI47_17965 -2.7 -13.7 glucose-6-phosphate isomerase compare
IAI47_16220 -2.6 -5.8 thr operon leader peptide compare
IAI47_05395 -2.6 -13.5 sulfate/thiosulfate ABC transporter permease CysW compare
IAI47_09360 -2.5 -2.2 peptide ABC transporter ATP-binding protein SapF compare
IAI47_00875 -2.5 -2.7 met regulon transcriptional regulator MetJ compare
IAI47_05465 -2.5 -6.7 bile acid:sodium symporter compare
IAI47_06980 -2.5 -4.5 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_01955 -2.4 -12.6 aspartate aminotransferase family protein compare
IAI47_04705 -2.4 -2.3 hypothetical protein compare
IAI47_03855 -2.4 -8.3 LysR family transcriptional regulator compare
IAI47_13635 -2.3 -10.5 quinolinate synthase NadA compare
IAI47_15700 -2.2 -12.7 multicopper oxidase CueO compare
IAI47_12915 -2.0 -9.5 leucine-responsive transcriptional regulator Lrp compare
IAI47_18315 -2.0 -7.5 HTH-type transcriptional regulator MetR compare
IAI47_05385 -2.0 -12.6 sulfate ABC transporter substrate-binding protein compare
IAI47_14730 -2.0 -1.4 exodeoxyribonuclease VII small subunit compare
IAI47_00300 -2.0 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_16870 -1.9 -6.4 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_09580 -1.9 -4.7 FNR family transcription factor compare
IAI47_04120 -1.8 -12.4 GTP diphosphokinase compare
IAI47_11310 -1.8 -3.6 redox-regulated ATPase YchF compare
IAI47_02585 -1.8 -3.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_17235 -1.8 -9.5 stringent starvation protein A compare
IAI47_15540 -1.8 -8.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_05155 -1.8 -13.6 polyphosphate kinase 1 compare
IAI47_05440 -1.8 -8.4 cysteine synthase A compare
IAI47_18270 -1.8 -4.6 twin-arginine translocase TatA/TatE family subunit compare
IAI47_18240 -1.7 -3.5 NAD(P)H-flavin reductase compare
IAI47_03375 -1.7 -8.1 peptide chain release factor 3 compare
IAI47_05195 -1.7 -3.3 DnaA inactivator Hda compare
IAI47_12110 -1.7 -3.7 ribonuclease E compare
IAI47_15845 -1.6 -8.8 carboxylating nicotinate-nucleotide diphosphorylase compare
IAI47_14395 -1.6 -7.2 Cu(I)-responsive transcriptional regulator compare
IAI47_06245 -1.6 -4.0 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_18215 -1.6 -1.2 Trk system potassium transporter TrkH compare
IAI47_17020 -1.6 -3.0 30S ribosome-binding factor RbfA compare
IAI47_00515 -1.5 -2.5 DNA-directed RNA polymerase subunit omega compare
IAI47_03135 -1.4 -5.1 outer membrane channel protein TolC compare
IAI47_14075 -1.4 -1.7 transcription antiterminator/RNA stability regulator CspE compare
IAI47_13700 -1.4 -3.3 Tol-Pal system protein TolQ compare
IAI47_06750 -1.4 -8.2 outer membrane permeability protein SanA compare
IAI47_12925 -1.4 -2.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_05070 -1.3 -0.9 outer membrane protein assembly factor BamB compare
IAI47_05175 -1.3 -6.6 phosphoribosylglycinamide formyltransferase compare
IAI47_06270 -1.3 -6.7 colicin V production protein compare
IAI47_12930 -1.2 -3.0 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_12030 -1.2 -8.6 PTS glucose transporter subunit IIBC compare
IAI47_18830 -1.2 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_06320 -1.2 -5.4 phosphate acetyltransferase compare
IAI47_13695 -1.2 -0.8 colicin uptake protein TolR compare
IAI47_15345 -1.2 -9.8 murein transglycosylase D compare
IAI47_06325 -1.2 -4.6 acetate kinase compare
IAI47_15595 -1.2 -1.4 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_04845 -1.2 -9.2 L-aspartate oxidase compare
IAI47_18520 -1.2 -10.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_01820 -1.2 -4.8 two-component system response regulator OmpR compare
IAI47_00675 -1.1 -10.2 glycosyltransferase family 9 protein compare
IAI47_05425 -1.1 -4.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_10825 -1.1 -1.6 tRNA-Val compare
IAI47_14040 -1.1 -8.9 D-alanyl-D-alanine carboxypeptidase DacA compare
IAI47_17215 -1.1 -0.7 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_12050 -1.1 -7.2 cell division protein YceG compare
IAI47_17005 -1.1 -5.1 polyribonucleotide nucleotidyltransferase compare
IAI47_18480 -1.1 -7.6 lipid III flippase WzxE compare
IAI47_08445 -1.1 -1.6 Holliday junction branch migration protein RuvA compare
IAI47_03645 -1.1 -9.4 O-antigen ligase family protein compare
IAI47_18435 -1.1 -8.2 uroporphyrinogen-III C-methyltransferase compare
IAI47_01120 -1.1 -5.9 manganese efflux pump MntP compare
IAI47_18410 -1.1 -3.0 diaminopimelate epimerase compare
IAI47_13725 -1.1 -4.1 cytochrome ubiquinol oxidase subunit I compare
IAI47_00465 -1.1 -2.7 ribosome-dependent GTPase TypA compare
IAI47_02090 -1.1 -2.9 elongation factor Tu compare
IAI47_03640 -1.0 -8.5 glycosyltransferase compare
IAI47_08450 -1.0 -3.1 Holliday junction branch migration DNA helicase RuvB compare
IAI47_05325 -1.0 -2.2 DUF1471 domain-containing protein compare
IAI47_00670 -1.0 -9.0 sugar glycosyltransferase compare
IAI47_01365 -1.0 -1.4 inorganic phosphate transporter PitA compare
IAI47_07020 -1.0 -1.5 hypothetical protein compare
IAI47_03240 -1.0 -2.7 TonB system transport protein ExbD compare
IAI47_18470 -1.0 -8.2 ECA oligosaccharide polymerase compare
IAI47_09010 -1.0 -4.9 formyltetrahydrofolate deformylase compare
IAI47_19890 -1.0 -1.8 hypothetical protein compare
IAI47_03235 -1.0 -3.0 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_17560 -1.0 -0.8 ROK family transcriptional regulator compare
IAI47_16390 -0.9 -0.7 tRNA-Leu compare
IAI47_19945 -0.9 -1.0 hypothetical protein compare
IAI47_06355 -0.9 -5.7 transcriptional regulator LrhA compare
IAI47_02400 -0.9 -1.3 YhdT family protein compare
IAI47_04870 -0.9 -3.7 elongation factor 4 compare
IAI47_13675 -0.9 -5.4 cell division protein CpoB compare
IAI47_12055 -0.9 -5.2 aminodeoxychorismate lyase compare
IAI47_18055 -0.9 -4.1 DNA-binding protein HU-alpha compare
IAI47_16995 -0.9 -1.1 protein YrbN compare
IAI47_06380 -0.9 -1.7 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_14775 -0.9 -3.2 transcriptional regulator NrdR compare
IAI47_11415 -0.9 -1.0 hypothetical protein compare
IAI47_12885 -0.9 -5.3 pyruvate formate lyase 1-activating protein compare
IAI47_17035 -0.9 -1.6 ribosome maturation factor RimP compare
IAI47_13720 -0.9 -3.1 cytochrome d ubiquinol oxidase subunit II compare
IAI47_12570 -0.8 -1.1 tRNA-Ser compare
IAI47_01550 -0.8 -5.1 cell division protein FtsX compare
IAI47_10320 -0.8 -0.7 Rrf2 family transcriptional regulator compare
IAI47_13950 -0.8 -1.2 PhoH family protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pantoea sp. MT58

For stress Nickel (II) chloride hexahydrate across organisms