Experiment set1IT064 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -5.3 -5.1 O-succinylhomoserine sulfhydrylase compare
AO353_13070 -5.0 -4.9 phosphoserine phosphatase compare
AO353_07220 -4.5 -7.5 anthranilate synthase compare
AO353_02070 -4.5 -6.8 prephenate dehydratase compare
AO353_20625 -4.4 -4.3 3-isopropylmalate dehydratase compare
AO353_12365 -4.4 -4.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_05705 -4.4 -9.3 oxidoreductase conserved
AO353_05110 -4.4 -11.6 histidinol dehydrogenase compare
AO353_20635 -4.3 -14.4 3-isopropylmalate dehydrogenase compare
AO353_07230 -4.3 -16.8 anthranilate synthase compare
AO353_12085 -4.2 -8.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_05715 -4.1 -12.4 lactate utilization protein B/C conserved
AO353_10670 -4.1 -8.8 shikimate dehydrogenase compare
AO353_08345 -4.1 -9.5 dihydroxy-acid dehydratase compare
AO353_08180 -4.1 -13.8 homoserine O-acetyltransferase compare
AO353_14505 -4.0 -13.2 ketol-acid reductoisomerase compare
AO353_02075 -4.0 -11.8 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20665 -4.0 -11.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_05115 -4.0 -11.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12520 -4.0 -13.2 glutamate synthase compare
AO353_00430 -4.0 -6.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12070 -3.9 -10.1 imidazoleglycerol-phosphate dehydratase compare
AO353_20620 -3.9 -9.0 isopropylmalate isomerase compare
AO353_13165 -3.9 -6.5 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12515 -3.9 -23.1 glutamate synthase compare
AO353_08185 -3.8 -12.0 methionine biosynthesis protein MetW compare
AO353_07210 -3.8 -6.8 indole-3-glycerol-phosphate synthase compare
AO353_14500 -3.8 -6.8 acetolactate synthase 3 regulatory subunit compare
AO353_02685 -3.8 -4.5 phosphoribosylglycinamide formyltransferase compare
AO353_08685 -3.7 -9.9 N-acetylglutamate synthase compare
AO353_10710 -3.6 -6.1 tryptophan synthase subunit beta compare
AO353_14400 -3.6 -4.9 Fis family transcriptional regulator compare
AO353_10025 -3.6 -17.2 pyruvate carboxylase subunit B compare
AO353_09000 -3.6 -6.4 argininosuccinate lyase compare
AO353_08475 -3.6 -11.1 phosphoserine phosphatase compare
AO353_07525 -3.6 -16.8 biotin synthase compare
AO353_12500 -3.5 -2.4 shikimate kinase compare
AO353_10035 -3.5 -9.9 LysR family transcriptional regulator compare
AO353_19060 -3.5 -5.7 CysB family transcriptional regulator compare
AO353_14595 -3.4 -11.9 carbonate dehydratase compare
AO353_07515 -3.4 -3.3 transporter compare
AO353_10030 -3.4 -12.4 pyruvate carboxylase subunit A compare
AO353_12075 -3.4 -10.0 imidazole glycerol phosphate synthase subunit HisH compare
AO353_14495 -3.4 -13.5 acetolactate synthase 3 catalytic subunit compare
AO353_20540 -3.3 -9.3 aromatic amino acid aminotransferase compare
AO353_05700 -3.3 -12.8 L-lactate permease conserved
AO353_07215 -3.3 -9.2 anthranilate phosphoribosyltransferase compare
AO353_05710 -3.3 -15.4 (Fe-S)-binding protein conserved
AO353_12090 -3.3 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
AO353_16940 -3.2 -7.8 deoxycytidine triphosphate deaminase compare
AO353_09240 -3.2 -4.8 acetylglutamate kinase compare
AO353_07155 -3.1 -9.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_04155 -3.1 -14.2 ornithine carbamoyltransferase compare
AO353_12115 -3.1 -4.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12360 -3.1 -10.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_10705 -3.1 -6.2 tryptophan synthase subunit alpha compare
AO353_15925 -3.0 -12.8 2-isopropylmalate synthase compare
AO353_08510 -3.0 -6.7 3-phosphoglycerate dehydrogenase compare
AO353_07505 -3.0 -10.7 dethiobiotin synthetase compare
AO353_08045 -2.9 -16.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_11775 -2.9 -9.4 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_04105 -2.9 -10.8 argininosuccinate synthase compare
AO353_14370 -2.9 -8.5 glucose-6-phosphate isomerase compare
AO353_14115 -2.9 -8.0 gamma-glutamyl kinase compare
AO353_22800 -2.8 -3.8 sulfite reductase compare
AO353_07510 -2.8 -12.1 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_08015 -2.8 -9.1 5,10-methylenetetrahydrofolate reductase compare
AO353_07520 -2.8 -14.5 8-amino-7-oxononanoate synthase compare
AO353_03015 -2.7 -6.7 arginine N-succinyltransferase compare
AO353_00825 -2.7 -4.7 porin compare
AO353_03020 -2.6 -8.4 arginine N-succinyltransferase compare
AO353_20175 -2.6 -4.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_05105 -2.6 -11.4 histidinol-phosphate aminotransferase compare
AO353_06495 -2.5 -6.2 gamma-glutamyl phosphate reductase compare
AO353_08165 -2.3 -3.5 pyrroline-5-carboxylate reductase compare
AO353_02720 -2.3 -7.2 cysteine synthase compare
AO353_02975 -2.3 -4.0 aspartate kinase compare
AO353_08780 -2.3 -8.6 5-formyltetrahydrofolate cyclo-ligase compare
AO353_03585 -2.1 -3.0 ATP-dependent DNA helicase RuvA compare
AO353_27650 -2.1 -5.8 cell division protein FtsK compare
AO353_07355 -2.1 -7.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_00310 -2.0 -10.0 transaldolase compare
AO353_04355 -2.0 -3.2 homoserine dehydrogenase compare
AO353_09040 -1.9 -1.6 diaminopimelate epimerase compare
AO353_09285 -1.8 -9.1 reactive intermediate/imine deaminase compare
AO353_14220 -1.8 -2.5 ribosomal large subunit pseudouridine synthase D compare
AO353_06040 -1.8 -4.7 exodeoxyribonuclease V subunit alpha compare
AO353_02250 -1.8 -2.7 chorismate synthase compare
AO353_15250 -1.8 -3.9 cytochrome B compare
AO353_05420 -1.7 -2.6 peptide chain release factor 3 compare
AO353_00620 -1.7 -3.2 cytochrome C oxidase Cbb3 compare
AO353_00490 -1.7 -3.1 PasA protein compare
AO353_11165 -1.7 -8.7 hypothetical protein compare
AO353_12345 -1.7 -2.1 twin-arginine protein translocation system subunit TatC compare
AO353_05010 -1.7 -3.2 HopJ type III effector protein compare
AO353_06045 -1.7 -7.7 exodeoxyribonuclease V subunit beta compare
AO353_05080 -1.7 -9.9 sulfate adenylyltransferase compare
AO353_13140 -1.7 -6.3 tRNA dimethylallyltransferase compare
AO353_03590 -1.7 -4.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_08100 -1.6 -4.3 chemotaxis protein CheY compare
AO353_02710 -1.6 -10.0 (p)ppGpp synthetase compare
AO353_07075 -1.6 -5.1 elongation factor Tu compare
AO353_13160 -1.6 -2.8 membrane protease HflC compare
AO353_11770 -1.6 -2.4 molecular chaperone Hsp33 compare
AO353_08485 -1.5 -10.1 threonine dehydratase compare
AO353_03615 -1.5 -3.7 cold-shock protein compare
AO353_02300 -1.5 -2.0 MarR family transcriptional regulator compare
AO353_13100 -1.5 -1.6 GTPase RsgA compare
AO353_06050 -1.5 -6.5 exodeoxyribonuclease V subunit gamma compare
AO353_04500 -1.5 -2.7 DNA repair protein RecO compare
AO353_14405 -1.5 -8.1 ATPase compare
AO353_04565 -1.4 -5.8 nucleoid-associated protein compare
AO353_15185 -1.4 -4.6 ATPase compare
AO353_10430 -1.4 -3.4 chromosome partitioning protein ParB compare
AO353_16745 -1.4 -2.5 ArsR family transcriptional regulator compare
AO353_08885 -1.4 -10.3 polyphosphate kinase compare
AO353_05075 -1.4 -8.4 adenylylsulfate kinase compare
AO353_12420 -1.4 -3.1 predicted FeS cluster maintenance protein (from data) compare
AO353_03580 -1.4 -3.6 ATP-dependent DNA helicase RuvB compare
AO353_05625 -1.3 -2.0 transcription elongation factor GreA compare
AO353_04175 -1.3 -4.5 glycerol uptake facilitator GlpF compare
AO353_18540 -1.3 -3.2 pseudouridine synthase compare
AO353_06320 -1.3 -4.1 AsnC family transcriptional regulator compare
AO353_00650 -1.3 -2.5 cytochrome biogenesis protein compare
AO353_13640 -1.3 -3.7 histidine kinase compare
AO353_00750 -1.3 -3.3 GntR family transcriptional regulator compare
AO353_14775 -1.2 -5.5 hypothetical protein compare
AO353_10945 -1.2 -2.8 cytochrome C compare
AO353_26945 -1.2 -2.5 transcriptional regulator compare
AO353_16805 -1.2 -5.1 recombinase RecA compare
AO353_00605 -1.2 -5.3 cytochrome C oxidase Cbb3 compare
AO353_12145 -1.2 -4.1 nitrogen regulation protein NR(I) compare
AO353_00865 -1.2 -7.2 phosphoenolpyruvate synthase compare
AO353_14395 -1.2 -3.5 poly(A) polymerase compare
AO353_02465 -1.1 -2.1 hypothetical protein compare
AO353_02140 -1.1 -6.8 BolA family transcriptional regulator compare
AO353_13245 -1.1 -4.2 hypothetical protein compare
AO353_27710 -1.1 -1.1 DNA repair protein compare
AO353_10435 -1.1 -6.4 chromosome partitioning protein compare
AO353_20095 -1.1 -4.2 histidine kinase compare
AO353_02810 -1.1 -5.8 histidine kinase compare
AO353_04365 -1.0 -4.0 recombinase XerD compare
AO353_00610 -1.0 -1.5 cytochrome C oxidase Cbb3 compare
AO353_11850 -1.0 -3.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_15725 -1.0 -3.5 hypothetical protein compare
AO353_12105 -1.0 -4.8 peptidase S41 compare
AO353_10440 -1.0 -4.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_01685 -1.0 -2.0 hypothetical protein compare
AO353_14150 -1.0 -1.6 peptidylprolyl isomerase compare
AO353_17410 -1.0 -1.7 arylsulfate sulfotransferase compare
AO353_08910 -1.0 -2.2 hypothetical protein compare
AO353_16210 -1.0 -7.3 XRE family transcriptional regulator compare
AO353_09890 -1.0 -4.0 phosphate ABC transporter ATP-binding protein compare
AO353_09045 -1.0 -1.7 hypothetical protein compare
AO353_11750 -1.0 -2.2 ATPase compare
AO353_09050 -1.0 -3.2 recombinase XerC compare
AO353_16810 -1.0 -2.4 recombinase RecX compare
AO353_19810 -1.0 -2.3 filamentous hemagglutinin compare
AO353_11085 -0.9 -3.7 NAD(P) transhydrogenase compare
AO353_20795 -0.9 -6.1 deoxyribonuclease compare
AO353_14935 -0.9 -2.8 aminopeptidase compare
AO353_09265 -0.9 -1.9 hypothetical protein compare
AO353_00515 -0.9 -2.8 hypothetical protein compare
AO353_01410 -0.9 -2.1 ribonuclease E compare
AO353_09860 -0.9 -6.0 histidine kinase compare
AO353_25335 -0.9 -1.8 malonate decarboxylase acyl carrier protein compare
AO353_07325 -0.9 -1.4 diadenosine tetraphosphatase compare
AO353_04055 -0.9 -1.8 methionine--tRNA ligase compare
AO353_10445 -0.9 -1.5 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_16845 -0.9 -5.0 LysR family transcriptional regulator compare
AO353_05690 -0.9 -2.5 SsrA-binding protein compare
AO353_17750 -0.9 -1.9 transcriptional regulator compare
AO353_11695 -0.9 -1.7 hypothetical protein compare
AO353_04180 -0.8 -5.2 glycerol kinase compare
AO353_07315 -0.8 -1.8 rRNA methyltransferase compare
AO353_00630 -0.8 -4.0 (Fe-S)-binding protein compare
AO353_20785 -0.8 -3.5 carbon storage regulator CsrA compare
AO353_22685 -0.8 -3.0 peroxidase compare
AO353_06585 -0.8 -4.0 hypothetical protein compare
AO353_11340 -0.8 -1.2 MarR family transcriptional regulator compare
AO353_20630 -0.8 -4.4 SAM-dependent methyltransferase compare
AO353_18305 -0.8 -2.1 RNA helicase compare
AO353_13605 -0.8 -4.7 oxidoreductase compare
AO353_20370 -0.8 -2.4 MerR family transcriptional regulator compare
AO353_26070 -0.8 -2.1 hypothetical protein compare
AO353_21615 -0.8 -5.6 methionine synthase compare
AO353_13600 -0.8 -2.5 precorrin-6Y C5,15-methyltransferase compare
AO353_11455 -0.8 -1.7 hypothetical protein compare
AO353_08975 -0.8 -3.8 heme biosynthesis protein HemY compare
AO353_02060 -0.8 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_15490 -0.8 -1.2 hypothetical protein compare
AO353_13670 -0.8 -2.7 ribosomal protein L11 methyltransferase compare
AO353_11530 -0.8 -4.5 diguanylate cyclase compare
AO353_09015 -0.8 -2.4 DNA-binding protein compare
AO353_05340 -0.7 -2.8 histidine kinase compare
AO353_00665 -0.7 -2.6 adenine phosphoribosyltransferase compare
AO353_18765 -0.7 -2.4 hypothetical protein compare
AO353_21430 -0.7 -2.2 hypothetical protein compare
AO353_16605 -0.7 -5.4 protein-L-isoaspartate O-methyltransferase compare
AO353_03365 -0.7 -4.5 transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium D,L-Lactate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium D,L-Lactate across organisms