Experiment set1IT064 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium D,L-Lactate carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_02735 +2.7 24.0 chemotaxis protein CheY compare
AO353_21830 +2.5 22.1 chemotaxis protein CheY compare
AO353_19340 +2.0 17.5 amino acid ABC transporter substrate-binding protein compare
AO353_11190 +1.7 15.3 ABC transporter compare
AO353_11185 +1.6 14.3 channel protein TolC compare
AO353_11195 +1.6 14.5 hemolysin secretion protein D compare
AO353_11180 +1.6 15.0 large adhesive protein compare
AO353_16615 +1.5 12.9 RNA polymerase sigma factor RpoS compare
AO353_11155 +1.5 13.2 thioesterase compare
AO353_09250 +1.3 5.5 exodeoxyribonuclease III compare
AO353_08465 +1.3 11.6 phosphoenolpyruvate-protein phosphotransferase compare
AO353_19335 +1.1 7.8 TetR family transcriptional regulator compare
AO353_11160 +1.1 6.3 GntR family transcriptional regulator compare
AO353_14590 +1.0 2.2 serine kinase/phosphatase compare
AO353_20925 +1.0 1.7 hypothetical protein compare
AO353_11170 +1.0 7.3 hypothetical protein compare
AO353_08775 +1.0 2.9 cell division protein ZapA compare
AO353_19020 +0.9 3.7 hypothetical protein compare
AO353_27905 +0.9 3.5 N-formylglutamate amidohydrolase compare
AO353_27890 +0.9 5.2 RpiR family transcriptional regulator compare
AO353_01055 +0.9 7.6 AraC family transcriptional regulator compare
AO353_12665 +0.9 3.0 glycosyl transferase compare
AO353_19015 +0.8 7.0 hypothetical protein compare
AO353_27660 +0.8 3.2 leucyl/phenylalanyl-tRNA--protein transferase compare
AO353_06540 +0.8 2.7 hypothetical protein compare
AO353_01060 +0.8 5.4 3-ketoacyl-ACP reductase compare
AO353_13420 +0.8 2.3 hypothetical protein compare
AO353_13300 +0.7 1.4 LOG family protein compare
AO353_26390 +0.7 2.3 glyoxalase compare
AO353_12950 +0.7 4.7 polymerase compare
AO353_22645 +0.7 2.1 hypothetical protein compare
AO353_16040 +0.7 1.6 hypothetical protein compare
AO353_01435 +0.7 2.2 protein tyrosine phosphatase compare
AO353_00765 +0.7 5.1 D-alanyl-D-alanine carboxypeptidase compare
AO353_09560 +0.6 1.4 type VI secretion protein compare
AO353_06550 +0.6 4.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
AO353_04090 +0.6 2.0 leucyl-tRNA synthetase compare
AO353_00530 +0.6 5.2 lytic transglycosylase compare
AO353_19025 +0.6 4.9 acetyltransferase compare
AO353_01070 +0.6 5.4 poly(R)-hydroxyalkanoic acid synthase compare
AO353_09745 +0.6 0.7 hypothetical protein compare
AO353_04100 +0.6 2.7 hypothetical protein compare
AO353_05130 +0.6 0.8 anti-anti-sigma factor compare
AO353_02520 +0.6 1.4 sodium transporter compare
AO353_10040 +0.6 4.2 transcriptional regulator compare
AO353_23785 +0.6 1.3 hypothetical protein compare
AO353_01905 +0.6 3.2 TetR family transcriptional regulator compare
AO353_06460 +0.6 3.6 hypothetical protein compare
AO353_01065 +0.6 3.6 acetyl-CoA acetyltransferase compare
AO353_06795 +0.6 1.6 Isochorismatase compare
AO353_22520 +0.6 1.3 hypothetical protein compare
AO353_22280 +0.6 2.0 hypothetical protein compare
AO353_21465 +0.6 2.1 cation:proton antiporter compare
AO353_26935 +0.6 1.9 LysR family transcriptional regulator compare
AO353_03250 +0.6 0.9 gluconokinase compare
AO353_16380 +0.6 2.4 hypothetical protein compare
AO353_18325 +0.6 1.3 hypothetical protein compare
AO353_21400 +0.6 1.7 conjugal transfer protein TraR compare
AO353_21935 +0.5 1.8 nitrite reductase compare
AO353_16530 +0.5 1.0 ribonuclease HII compare
AO353_26525 +0.5 1.2 hypothetical protein compare
AO353_20510 +0.5 0.9 amidase compare
AO353_24300 +0.5 2.4 transcriptional regulator compare
AO353_27350 +0.5 1.9 hypothetical protein compare
AO353_20680 +0.5 2.5 cell division protein compare
AO353_22305 +0.5 1.7 LysR family transcriptional regulator compare
AO353_21175 +0.5 1.7 hypothetical protein compare
AO353_19605 +0.5 1.3 hypothetical protein compare
AO353_13575 +0.5 2.3 hypothetical protein compare
AO353_07140 +0.5 4.4 peptidase M23 compare
AO353_01345 +0.5 4.3 aminodeoxychorismate lyase compare
AO353_08245 +0.5 1.5 cell division ATP-binding protein FtsE compare
AO353_12650 +0.5 1.0 hypothetical protein compare
AO353_04315 +0.5 2.7 oxidoreductase compare
AO353_12690 +0.5 0.8 acyl carrier protein compare
AO353_04065 +0.5 1.7 electron transporter RnfB compare
AO353_15210 +0.5 2.3 Zn-dependent hydrolase compare
AO353_01795 +0.5 1.7 hypothetical protein compare
AO353_03515 +0.5 1.3 cold-shock protein compare
AO353_10495 +0.5 1.9 serine hydroxymethyltransferase compare
AO353_06725 +0.5 0.9 hypothetical protein compare
AO353_17160 +0.5 1.5 aspartate-semialdehyde dehydrogenase compare
AO353_12940 +0.5 3.3 glycosyl transferase compare
AO353_12125 +0.5 3.0 glutaredoxin compare
AO353_27420 +0.5 2.0 DNA-binding protein compare
AO353_27335 +0.5 1.6 hypothetical protein compare
AO353_15730 +0.5 1.8 hypothetical protein compare
AO353_00760 +0.5 1.5 hypothetical protein compare
AO353_21780 +0.5 2.2 Fis family transcriptional regulator compare
AO353_24595 +0.5 1.1 hypothetical protein compare
AO353_13660 +0.5 3.0 tRNA-dihydrouridine synthase B compare
AO353_12935 +0.5 1.6 glycosyltransferase compare
AO353_17515 +0.5 1.7 short-chain dehydrogenase compare
AO353_04440 +0.5 2.1 hypothetical protein compare
AO353_17365 +0.5 1.6 hypothetical protein compare
AO353_07250 +0.5 1.5 polyamine ABC transporter permease compare
AO353_02525 +0.5 2.4 molecular chaperone compare
AO353_16765 +0.5 1.5 hypothetical protein compare
AO353_02660 +0.5 1.8 peptidase P60 compare
AO353_00590 +0.5 1.9 cytochrome C oxidase Cbb3 compare
AO353_25815 +0.5 1.9 hypothetical protein compare
AO353_03035 +0.5 2.3 AraC family transcriptional regulator compare
AO353_00115 +0.5 1.3 hypothetical protein compare
AO353_18660 +0.5 3.2 AAA family ATPase compare
AO353_27875 +0.5 2.5 exonuclease III compare
AO353_26815 +0.5 1.0 transcriptional regulator compare
AO353_03965 +0.5 3.4 type IV secretion protein Rhs compare
AO353_00195 +0.5 1.4 virion morphogenesis protein compare
AO353_08350 +0.5 2.9 hypothetical protein compare
AO353_00890 +0.5 1.9 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_06750 +0.5 1.5 methionine ABC transporter ATP-binding protein compare
AO353_26870 +0.4 1.6 AP endonuclease compare
AO353_09785 +0.4 1.3 hypothetical protein compare
AO353_25050 +0.4 2.1 AraC family transcriptional regulator compare
AO353_25680 +0.4 1.8 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) (from data) compare
AO353_10830 +0.4 3.7 cytochrome B559 subunit alpha compare
AO353_09915 +0.4 3.1 long-chain acyl-CoA thioester hydrolase compare
AO353_02920 +0.4 1.9 serine recombinase compare
AO353_11150 +0.4 3.2 mangotoxin biosynthesis-involved protein MgoB compare
AO353_02580 +0.4 4.0 Long-chain fatty acid transport protein compare
AO353_06345 +0.4 4.2 histidine kinase compare
AO353_27635 +0.4 2.1 camphor resistance protein CrcB compare
AO353_20465 +0.4 3.7 diguanylate cyclase compare
AO353_12730 +0.4 2.0 hypothetical protein compare
AO353_11330 +0.4 2.6 hypothetical protein compare
AO353_06480 +0.4 1.4 50S rRNA methyltransferase compare
AO353_24175 +0.4 1.3 hypothetical protein compare
AO353_28935 +0.4 1.4 ATPase compare
AO353_23835 +0.4 1.6 hypothetical protein compare
AO353_05695 +0.4 3.6 transcriptional regulator PdhR compare
AO353_02480 +0.4 3.2 peptidylprolyl isomerase compare
AO353_08615 +0.4 2.0 hypothetical protein compare
AO353_03420 +0.4 1.8 phosphogluconate dehydratase compare
AO353_24200 +0.4 2.3 serine--tRNA ligase compare
AO353_27290 +0.4 2.5 phage tail protein compare
AO353_03435 +0.4 2.3 RNA polymerase subunit sigma-24 compare
AO353_22675 +0.4 1.8 hypothetical protein compare
AO353_12270 +0.4 1.8 histidine ammonia-lyase compare
AO353_15050 +0.4 1.7 nitrate transport permease nrtB compare
AO353_02590 +0.4 1.6 MarR family transcriptional regulator compare
AO353_04185 +0.4 2.4 DeoR family transcriptional regulator compare
AO353_22370 +0.4 1.4 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_15535 +0.4 1.7 hypothetical protein compare
AO353_02090 +0.4 2.9 N-ethylammeline chlorohydrolase compare
AO353_01075 +0.4 2.2 hypothetical protein compare
AO353_20865 +0.4 1.3 cold-shock protein compare
AO353_00885 +0.4 1.6 3-methylitaconate isomerase compare
AO353_25305 +0.4 1.9 malonate transporter compare
AO353_21255 +0.4 2.0 ABC transporter ATP-binding protein compare
AO353_20380 +0.4 3.2 acyl-CoA dehydrogenase compare
AO353_11470 +0.4 1.6 hypothetical protein compare
AO353_24120 +0.4 1.0 hypothetical protein compare
AO353_16980 +0.4 0.9 isochorismatase compare
AO353_26110 +0.4 2.1 hypothetical protein compare
AO353_29105 +0.4 1.9 hypothetical protein compare
AO353_02995 +0.4 2.6 succinylglutamate desuccinylase compare
AO353_15015 +0.4 3.5 adhesin compare
AO353_16195 +0.4 0.4 DNA mismatch repair protein MutT compare
AO353_22845 +0.4 1.4 GNAT family acetyltransferase compare
AO353_01020 +0.4 1.9 hypothetical protein compare
AO353_05490 +0.4 2.4 transcriptional regulator compare
AO353_08210 +0.4 1.9 tRNA (guanine-N7)-methyltransferase compare
AO353_01035 +0.4 1.6 hypothetical protein compare
AO353_22955 +0.4 1.5 tRNA hydroxylase compare
AO353_01595 +0.4 1.3 Flp pilus assembly protein CpaB compare
AO353_05940 +0.4 2.5 AsnC family transcriptional regulator compare
AO353_13395 +0.4 1.0 protein hupE compare
AO353_27155 +0.4 0.9 hypothetical protein compare
AO353_07340 +0.4 3.5 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_27920 +0.4 1.9 arginine N-succinyltransferase compare
AO353_18655 +0.4 1.1 flagellar assembly protein FliT compare
AO353_12720 +0.4 1.0 hypothetical protein compare
AO353_22530 +0.4 1.5 hypothetical protein compare
AO353_03905 +0.4 2.7 ATPase compare
AO353_27500 +0.4 1.1 hypothetical protein compare
AO353_19045 +0.4 2.5 2-dehydropantoate 2-reductase compare
AO353_22145 +0.4 2.2 FTR1 family iron permease compare
AO353_00915 +0.4 2.9 hypothetical protein compare
AO353_10965 +0.4 3.0 N-acetylmuramoyl-L-alanine amidase compare
AO353_17290 +0.4 1.9 multidrug transporter compare
AO353_20970 +0.4 1.6 hypothetical protein compare
AO353_29165 +0.4 1.5 fructose-bisphosphate aldolase compare
AO353_19000 +0.4 1.0 ABC transporter compare
AO353_16350 +0.4 1.5 SAM-dependent methyltransferase compare
AO353_25670 +0.4 2.0 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
AO353_02125 +0.4 2.8 ABC transporter ATP-binding protein compare
AO353_08395 +0.4 1.7 FAD-dependent oxidoreductase compare
AO353_07335 +0.4 3.2 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_15280 +0.4 1.7 hypothetical protein compare
AO353_16355 +0.4 1.8 TetR family transcriptional regulator compare
AO353_27380 +0.4 0.8 pyocin R2, holin compare
AO353_17340 +0.4 1.4 glycerol acyltransferase compare
AO353_02275 +0.4 1.7 hypothetical protein compare
AO353_13835 +0.4 2.5 hypothetical protein compare
AO353_15285 +0.4 2.8 hypothetical protein compare
AO353_12130 +0.4 1.2 preprotein translocase subunit SecB compare
AO353_23235 +0.4 1.9 NADP oxidoreductase compare
AO353_21180 +0.4 2.0 transposase compare
AO353_24425 +0.4 1.0 amino acid ABC transporter permease compare
AO353_17450 +0.4 1.8 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium D,L-Lactate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium D,L-Lactate across organisms