Experiment set1IT064 for Rahnella sp. WP5

Compare to:

L-Glutamine nitrogen source; ShewMM media; shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS15005 -6.1 -14.7 dihydroxy-acid dehydratase compare
EX31_RS02530 -5.8 -5.7 ABC transporter ATP-binding protein compare
EX31_RS22625 -5.8 -4.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS15020 -5.7 -19.2 ketol-acid reductoisomerase compare
EX31_RS20980 -5.5 -6.6 glutamate 5-kinase compare
EX31_RS04035 -5.5 -14.1 phosphoserine phosphatase compare
EX31_RS16860 -5.4 -20.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS13275 -5.4 -13.4 diaminopimelate decarboxylase compare
EX31_RS03940 -5.3 -12.9 homoserine kinase compare
EX31_RS12400 -5.3 -7.3 RNA polymerase factor sigma-54 compare
EX31_RS02520 -5.3 -5.1 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS03935 -5.3 -12.3 threonine synthase compare
EX31_RS03685 -5.3 -15.5 3-isopropylmalate dehydrogenase compare
EX31_RS14180 -5.2 -17.4 argininosuccinate lyase compare
EX31_RS02690 -5.2 -6.2 pyrroline-5-carboxylate reductase compare
EX31_RS23245 -5.2 -18.4 asparagine synthase B compare
EX31_RS13445 -5.2 -17.3 argininosuccinate synthase compare
EX31_RS03690 -5.2 -12.1 3-isopropylmalate dehydratase large subunit compare
EX31_RS21470 -5.2 -10.0 phosphoglycerate dehydrogenase compare
EX31_RS13160 -5.2 -13.8 amino-acid N-acetyltransferase compare
EX31_RS03695 -5.1 -7.0 3-isopropylmalate dehydratase small subunit compare
EX31_RS22750 -5.1 -5.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS14185 -5.1 -9.2 acetylglutamate kinase compare
EX31_RS09975 -5.0 -7.6 tryptophan synthase subunit beta compare
EX31_RS14190 -4.9 -12.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS11440 -4.9 -7.4 histidinol dehydrogenase compare
EX31_RS11735 -4.8 -10.8 homoserine O-succinyltransferase compare
EX31_RS09965 -4.8 -7.4 anthranilate phosphoribosyltransferase compare
EX31_RS09980 -4.8 -7.3 tryptophan synthase subunit alpha compare
EX31_RS02515 -4.8 -6.5 PAS domain-containing protein compare
EX31_RS11470 -4.7 -4.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS03835 -4.7 -10.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS24385 -4.7 -3.3 dihydroorotase compare
EX31_RS21895 -4.7 -21.3 phosphoribosylformylglycinamidine synthase compare
EX31_RS03830 -4.7 -21.1 carbamoyl-phosphate synthase large subunit compare
EX31_RS14215 -4.6 -22.4 cystathionine gamma-synthase compare
EX31_RS11465 -4.6 -7.7 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS22620 -4.6 -6.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS18540 -4.5 -3.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS09960 -4.5 -5.3 glutamine amidotransferase compare
EX31_RS20975 -4.5 -9.5 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS11460 -4.4 -4.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS08745 -4.4 -3.0 50S ribosomal protein L9 compare
EX31_RS09855 -4.4 -5.2 orotidine-5'-phosphate decarboxylase compare
EX31_RS03945 -4.4 -26.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS20450 -4.4 -6.6 IMP dehydrogenase compare
EX31_RS11450 -4.3 -7.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS09970 -4.3 -9.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS19570 -4.3 -16.2 amidophosphoribosyltransferase compare
EX31_RS16855 -4.2 -16.8 phosphoribosylamine--glycine ligase compare
EX31_RS12785 -4.1 -15.7 aspartate carbamoyltransferase compare
EX31_RS14500 -4.1 -11.9 orotate phosphoribosyltransferase compare
EX31_RS18255 -4.0 -2.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS18095 -3.9 -7.9 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS11455 -3.9 -6.3 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS23440 -3.9 -2.7 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS20495 -3.9 -13.7 outer membrane protein assembly factor BamB compare
EX31_RS09955 -3.8 -9.9 anthranilate synthase component 1 compare
EX31_RS11445 -3.8 -10.4 histidinol-phosphate transaminase compare
EX31_RS18530 -3.8 -16.8 leucine-responsive transcriptional regulator Lrp compare
EX31_RS03250 -3.8 -12.3 RNA polymerase-binding protein DksA compare
EX31_RS09890 -3.7 -14.5 HTH-type transcriptional regulator CysB compare
EX31_RS04390 -3.7 -3.7 DNA polymerase III subunit chi compare
EX31_RS07585 -3.6 -9.3 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS07870 -3.6 -9.1 adenylyl-sulfate kinase compare
EX31_RS12825 -3.6 -9.4 ornithine carbamoyltransferase compare
EX31_RS22695 -3.5 -9.8 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS07590 -3.5 -2.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS18525 -3.3 -5.0 DNA translocase FtsK compare
EX31_RS12515 -3.3 -25.2 glutamate synthase large subunit compare
EX31_RS03680 -3.3 -13.4 2-isopropylmalate synthase compare
EX31_RS14340 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS20175 -3.2 -11.3 cysteine synthase A compare
EX31_RS22250 -3.2 -7.4 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS07895 -3.2 -11.4 phosphoadenylyl-sulfate reductase compare
EX31_RS07955 -3.2 -18.3 GTP diphosphokinase compare
EX31_RS05785 -3.1 -5.2 superoxide dismutase [Mn] compare
EX31_RS14335 -3.1 -2.1 serine O-acetyltransferase compare
EX31_RS22245 -3.1 -5.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS14205 -3.0 -11.7 methylenetetrahydrofolate reductase compare
EX31_RS12510 -3.0 -12.9 FAD-dependent oxidoreductase compare
EX31_RS07560 -2.9 -19.1 ATP-dependent chaperone ClpB compare
EX31_RS08720 -2.9 -14.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS14310 -2.8 -6.0 6-phosphofructokinase compare
EX31_RS06150 -2.8 -16.2 transcriptional regulator AsnC compare
EX31_RS07905 -2.7 -15.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS07900 -2.7 -14.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS06055 -2.7 -4.5 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS25370 -2.6 -11.5 HTH-type transcriptional regulator MetR compare
EX31_RS07875 -2.5 -15.0 sulfate adenylyltransferase subunit CysN compare
EX31_RS21850 -2.4 -3.2 pyridoxine 5'-phosphate synthase compare
EX31_RS07880 -2.4 -15.6 sulfate adenylyltransferase subunit CysD compare
EX31_RS09080 -2.3 -2.6 LysR family transcriptional regulator compare
EX31_RS06060 -2.3 -5.7 phosphate ABC transporter permease PstA compare
EX31_RS15155 -2.2 -3.6 diaminopimelate epimerase compare
EX31_RS03480 -2.2 -4.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS14620 -2.2 -2.9 SCP2 domain-containing protein compare
EX31_RS20735 -2.2 -5.1 exodeoxyribonuclease V subunit beta compare
EX31_RS09775 -2.1 -2.4 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS03790 -2.1 -3.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS22430 -1.9 -2.7 hemolysin expression modulator Hha compare
EX31_RS08535 -1.9 -3.7 30S ribosome-binding factor RbfA compare
EX31_RS04630 -1.8 -9.7 aspartate aminotransferase family protein compare
EX31_RS19610 -1.8 -7.4 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS04725 -1.7 -4.7 shikimate kinase AroK compare
EX31_RS07595 -1.7 -8.1 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS03775 -1.7 -3.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS22690 -1.7 -8.2 phosphoribosylglycinamide formyltransferase compare
EX31_RS15010 -1.6 -7.3 threonine ammonia-lyase, biosynthetic compare
EX31_RS19205 -1.6 -2.5 50S ribosomal protein L25 compare
EX31_RS06070 -1.6 -7.1 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS25340 -1.6 -4.8 hypothetical protein compare
EX31_RS25725 -1.6 -2.7 hypothetical protein compare
EX31_RS15000 -1.6 -9.4 branched-chain amino acid transaminase compare
EX31_RS09895 -1.6 -3.7 type I DNA topoisomerase compare
EX31_RS23490 -1.6 -2.7 cell envelope integrity protein TolA compare
EX31_RS25375 -1.6 -2.4 ilv operon leader peptide compare
EX31_RS16645 -1.5 -2.0 DUF1471 domain-containing protein compare
EX31_RS21400 -1.5 -5.5 transketolase compare
EX31_RS11435 -1.5 -4.2 ATP phosphoribosyltransferase compare
EX31_RS17285 -1.4 -4.4 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS10035 -1.4 -1.6 cardiolipin synthase compare
EX31_RS25290 -1.4 -2.0 hypothetical protein compare
EX31_RS01970 -1.4 -1.0 hypothetical protein compare
EX31_RS21805 -1.4 -2.2 anti-sigma-E factor RseA compare
EX31_RS24395 -1.4 -3.5 ribonuclease E compare
EX31_RS02385 -1.3 -1.0 hypothetical protein compare
EX31_RS19655 -1.3 -5.0 beta-ketoacyl-ACP synthase I compare
EX31_RS10930 -1.3 -2.8 protein DsrB compare
EX31_RS24325 -1.3 -2.8 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS15015 -1.3 -3.7 HTH-type transcriptional activator IlvY compare
EX31_RS11760 -1.3 -11.2 methionine synthase compare
EX31_RS19690 -1.3 -5.4 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
EX31_RS19600 -1.3 -5.5 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS15880 -1.3 -5.6 nitrogen regulation protein NR(I) compare
EX31_RS06065 -1.2 -5.7 phosphate ABC transporter permease PstC compare
EX31_RS06000 -1.2 -4.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS09425 -1.2 -2.2 L-cystine ABC transporter ATP-binding protein YecC compare
EX31_RS15870 -1.2 -3.6 glutamate--ammonia ligase compare
EX31_RS15875 -1.2 -7.3 nitrogen regulation protein NR(II) compare
EX31_RS06140 -1.2 -7.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS19395 -1.2 -2.7 NADH-quinone oxidoreductase subunit J compare
EX31_RS09490 -1.2 -1.5 hypothetical protein compare
EX31_RS21190 -1.2 -2.9 ribonuclease HI compare
EX31_RS20220 -1.2 -4.3 sulfate/thiosulfate ABC transporter permease CysT compare
EX31_RS18370 -1.2 -2.0 tail protein X compare
EX31_RS22740 -1.1 -7.3 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS17010 -1.1 -2.9 sugar ABC transporter permease compare
EX31_RS08145 -1.1 -9.0 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
EX31_RS24450 -1.1 -2.2 aminodeoxychorismate lyase compare
EX31_RS10955 -1.1 -2.2 AI-2E family transporter compare
EX31_RS20210 -1.1 -5.2 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
EX31_RS02465 -1.1 -2.2 hypothetical protein compare
EX31_RS10115 -1.1 -6.1 formyltetrahydrofolate deformylase compare
EX31_RS03890 -1.1 -3.1 Na+/H+ antiporter NhaA compare
EX31_RS11075 -1.1 -2.5 putative motility protein compare
EX31_RS09915 -1.1 -5.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
EX31_RS10100 -1.1 -2.1 two-component system response regulator RssB compare
EX31_RS14135 -1.1 -10.2 TonB-dependent vitamin B12 receptor BtuB compare
EX31_RS16840 -1.1 -5.2 YjaG family protein compare
EX31_RS11815 -1.1 -6.1 glucose-6-phosphate isomerase compare
EX31_RS14200 -1.1 -7.2 phosphoenolpyruvate carboxylase compare
EX31_RS12500 -1.0 -6.5 stringent starvation protein A compare
EX31_RS20180 -1.0 -2.0 phosphocarrier protein Hpr compare
EX31_RS20530 -1.0 -4.6 nucleoside-diphosphate kinase compare
EX31_RS10195 -1.0 -3.9 LysR family transcriptional regulator compare
EX31_RS16955 -1.0 -2.9 ABC transporter ATP-binding protein compare
EX31_RS11675 -1.0 -1.2 Holliday junction branch migration protein RuvA compare
EX31_RS23125 -1.0 -1.7 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS20610 -1.0 -2.6 nitrogen regulatory protein P-II compare
EX31_RS02720 -1.0 -5.7 glutaminase B conserved
EX31_RS21480 -1.0 -2.9 5-formyltetrahydrofolate cyclo-ligase compare
EX31_RS02140 -1.0 -3.7 DUF1852 domain-containing protein compare
EX31_RS16845 -1.0 -3.2 DNA-binding protein HU-alpha compare
EX31_RS07555 -1.0 -2.6 glucose 1-dehydrogenase compare
EX31_RS21020 -1.0 -1.6 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS11690 -1.0 -1.3 dihydroneopterin triphosphate diphosphatase compare
EX31_RS06285 -1.0 -2.1 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS07885 -1.0 -5.8 uroporphyrinogen-III C-methyltransferase compare
EX31_RS23990 -1.0 -1.0 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS13280 -1.0 -6.0 LysR family transcriptional regulator compare
EX31_RS11630 -0.9 -5.2 L-asparagine permease compare
EX31_RS20940 -0.9 -1.6 AlpA family transcriptional regulator compare
EX31_RS03920 -0.9 -4.8 transaldolase compare
EX31_RS07380 -0.9 -1.9 redox-regulated ATPase YchF compare
EX31_RS14990 -0.9 -5.7 acetolactate synthase 2 catalytic subunit compare
EX31_RS03010 -0.9 -4.6 helix-turn-helix domain-containing protein compare
EX31_RS04105 -0.9 -1.6 helix-turn-helix domain-containing protein compare
EX31_RS12875 -0.9 -1.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS22145 -0.9 -1.5 phosphatidylglycerophosphatase A compare
EX31_RS22120 -0.9 -3.2 transcriptional regulator NrdR compare
EX31_RS19430 -0.9 -2.9 NADH-quinone oxidoreductase subunit B compare
EX31_RS17265 -0.9 -1.9 hypothetical protein compare
EX31_RS04325 -0.9 -0.8 hypothetical protein compare
EX31_RS25365 -0.9 -1.0 50S ribosomal protein L31 compare
EX31_RS13775 -0.9 -2.2 transcriptional regulator SlyA compare
EX31_RS06225 -0.9 -1.5 hypothetical protein compare
EX31_RS11355 -0.9 -2.3 chemotaxis protein CheY compare
EX31_RS11065 -0.9 -3.4 TetR/AcrR family transcriptional regulator compare
EX31_RS11240 -0.9 -2.5 GNAT family N-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source L-Glutamine across organisms