Experiment set1IT064 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 10 generations

200 most important genes:

  gene name fitness t score description  
MMP_RS01985 -11.4 -6.6 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS06700 -10.3 -12.3 hypothetical protein compare
MMP_RS04090 -8.5 -4.6 hypothetical protein compare
MMP_RS01500 -7.8 -4.2 CBS domain-containing protein compare
MMP_RS06895 -7.7 -3.2 selenocysteine-specific translation elongation factor compare
MMP_RS01175 -7.7 -5.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06730 -7.5 -3.6 phosphopantothenate/pantothenate synthetase compare
MMP_RS00750 -7.4 -3.9 fumarate hydratase compare
MMP_RS09020 -7.3 -3.0 hypothetical protein compare
MMP_RS01020 -7.1 -1.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06285 -7.0 -3.9 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS03435 -6.8 -3.2 ketol-acid reductoisomerase compare
MMP_RS07630 -6.8 -2.8 ATP-binding cassette domain-containing protein compare
MMP_RS04780 -6.7 -4.5 ribonuclease P compare
MMP_RS08460 -6.7 -3.9 proteasome-activating nucleotidase compare
MMP_RS07445 -6.7 -9.5 helix-turn-helix domain-containing protein compare
MMP_RS07390 -6.5 -5.1 cell division protein FtsZ compare
MMP_RS07635 -6.4 -11.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS02280 -6.4 -1.5 DUF211 domain-containing protein compare
MMP_RS06400 -6.4 -3.1 4Fe-4S binding protein compare
MMP_RS04775 -6.3 -6.6 adenosylhomocysteinase compare
MMP_RS02145 -6.3 -15.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS06230 -6.3 -3.9 helix-turn-helix domain-containing protein compare
MMP_RS03600 -6.2 -4.3 triose-phosphate isomerase compare
MMP_RS06295 -6.2 -10.4 methanogenesis marker 14 protein compare
MMP_RS00305 -6.1 -3.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS06680 -6.0 -12.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06355 -6.0 -4.3 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06685 -5.9 -15.9 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS00300 -5.8 -1.4 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01795 -5.7 -3.3 methanogenesis marker 6 protein compare
MMP_RS03475 -5.6 -1.3 hypothetical protein compare
MMP_RS02240 -5.5 -4.6 methanogenesis marker 7 protein compare
MMP_RS05345 -5.5 -11.2 hypothetical protein compare
MMP_RS08650 -5.4 -6.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS03015 -5.4 -15.1 GTP 3' 8-cyclase MoaA compare
MMP_RS05515 -5.4 -7.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS07380 -5.3 -3.8 transcription elongation factor Spt5 compare
MMP_RS08635 -5.3 -3.1 UbiA family prenyltransferase compare
MMP_RS07600 -5.3 -4.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07005 -5.2 -1.3 4Fe-4S binding protein compare
MMP_RS06130 -5.1 -6.9 peptidylprolyl isomerase compare
MMP_RS00695 -5.1 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05920 -5.1 -1.2 50S ribosomal protein L37e compare
MMP_RS08745 -5.0 -10.2 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06885 -5.0 -4.5 50S ribosome-binding GTPase compare
MMP_RS03205 -5.0 -2.4 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS00110 -4.9 -4.7 hypothetical protein compare
MMP_RS03025 -4.9 -7.6 molybdenum cofactor guanylyltransferase compare
MMP_RS03315 -4.9 -2.7 ferrous iron transport protein A compare
MMP_RS03960 -4.8 -1.6 hypothetical protein compare
MMP_RS06315 -4.8 -1.6 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06270 -4.8 -8.3 TIGR00300 family protein compare
MMP_RS06350 -4.7 -11.2 HesA/MoeB/ThiF family protein compare
MMP_RS08720 -4.6 -2.6 4Fe-4S binding protein compare
MMP_RS07845 -4.5 -3.3 LL-diaminopimelate aminotransferase compare
MMP_RS07545 -4.5 -2.1 HTH domain-containing protein compare
MMP_RS04685 -4.5 -4.5 DUF126 domain-containing protein compare
MMP_RS06475 -4.4 -8.2 FAD-dependent oxidoreductase compare
MMP_RS08300 -4.4 -2.5 metal-sulfur cluster assembly factor compare
MMP_RS02135 -4.4 -6.3 DUF5612 domain-containing protein compare
MMP_RS00685 -4.3 -5.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS04890 -4.3 -1.4 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07605 -4.2 -4.1 diadenylate cyclase compare
MMP_RS01755 -4.2 -2.4 DUF2097 domain-containing protein compare
MMP_RS08715 -4.2 -3.1 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01220 -4.2 -9.8 hypothetical protein compare
MMP_RS06625 -4.1 -3.2 DNA primase compare
MMP_RS04585 -4.1 -11.9 AIR synthase related protein compare
MMP_RS06630 -4.1 -2.0 UPF0058 family protein compare
MMP_RS03390 -4.1 -9.3 malate dehydrogenase compare
MMP_RS02800 -4.1 -5.2 nucleotidyltransferase domain-containing protein compare
MMP_RS03155 -4.1 -10.5 precorrin-6A reductase compare
MMP_RS01005 -4.0 -2.1 riboflavin synthase compare
MMP_RS01325 -4.0 -3.4 dihydroneopterin aldolase family protein compare
MMP_RS07525 -4.0 -6.9 4Fe-4S binding protein compare
MMP_RS06105 -3.9 -13.3 hydrogenase maturation peptidase HycI compare
MMP_RS01225 -3.8 -7.2 DUF5379 domain-containing protein compare
MMP_RS01445 -3.7 -12.4 hypothetical protein compare
MMP_RS03640 -3.7 -6.8 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS00515 -3.7 -2.0 DUF655 domain-containing protein compare
MMP_RS01265 -3.7 -4.8 hypothetical protein compare
MMP_RS06120 -3.7 -4.1 UPF0147 family protein compare
MMP_RS07435 -3.7 -2.5 GMP synthase subunit A compare
MMP_RS06020 -3.6 -5.0 archaeoflavoprotein AfpA compare
MMP_RS07625 -3.6 -6.5 cobalt ECF transporter T component CbiQ compare
MMP_RS01380 -3.6 -6.7 PHP domain-containing protein compare
MMP_RS07615 -3.6 -7.7 energy-coupling factor ABC transporter permease compare
MMP_RS03445 -3.6 -2.1 methanogenesis marker 17 protein compare
MMP_RS01800 -3.5 -5.6 TIGR00303 family protein compare
MMP_RS06925 -3.5 -4.0 ribonuclease VapC4 compare
MMP_RS08860 -3.5 -5.3 MinD/ParA family protein compare
MMP_RS02355 -3.4 -5.0 30S ribosomal protein S27ae compare
MMP_RS03400 -3.4 -4.6 archease compare
MMP_RS00335 -3.4 -8.9 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS08440 -3.4 -5.4 cell division protein SepF compare
MMP_RS06600 -3.4 -1.9 class III signal peptide-containing protein compare
MMP_RS04710 -3.3 -2.8 hypothetical protein compare
MMP_RS02195 -3.3 -4.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01610 -3.3 -3.3 hypothetical protein compare
MMP_RS08210 -3.2 -4.0 phosphatidylglycerophosphatase A compare
MMP_RS03580 -3.2 -5.0 signal recognition particle-docking protein FtsY compare
MMP_RS02900 -3.2 -1.1 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06940 -3.2 -3.5 polyprenyl diphosphate synthase compare
MMP_RS05845 -3.2 -3.2 tRNA-intron lyase compare
MMP_RS01955 -3.1 -4.1 hypothetical protein compare
MMP_RS01830 -3.1 -2.6 tRNA-Val compare
MMP_RS08435 -3.1 -3.3 Era-like GTP-binding protein compare
MMP_RS06980 -3.0 -10.4 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07955 -3.0 -4.9 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS02165 -3.0 -9.8 tRNA-dihydrouridine synthase compare
MMP_RS07200 -3.0 -8.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS08790 -3.0 -4.4 translation initiation factor IF-2 subunit alpha compare
MMP_RS01385 -3.0 -1.2 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00810 -3.0 -10.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03110 -2.9 -8.4 glycosyltransferase family 2 protein compare
MMP_RS07075 -2.9 -9.4 phosphomannomutase/phosphoglucomutase compare
MMP_RS00985 -2.8 -9.7 CDC48 family AAA ATPase compare
MMP_RS06670 -2.8 -6.8 glucose-6-phosphate isomerase compare
MMP_RS01725 -2.8 -6.9 class I SAM-dependent methyltransferase family protein compare
MMP_RS05640 -2.8 -8.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS08590 -2.7 -6.7 flagellin compare
MMP_RS06715 -2.7 -18.7 cache domain-containing protein compare
MMP_RS06345 -2.7 -13.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06720 -2.7 -11.3 response regulator transcription factor compare
MMP_RS01545 -2.7 -2.0 CBS domain-containing protein compare
MMP_RS01900 -2.7 -17.8 hypothetical protein compare
MMP_RS08840 -2.7 -10.8 class I SAM-dependent methyltransferase compare
MMP_RS05430 -2.6 -2.2 TIGR00288 family NYN domain-containing protein compare
MMP_RS03305 -2.6 -8.0 winged helix-turn-helix domain-containing protein compare
MMP_RS08595 -2.6 -2.1 flagellar protein C compare
MMP_RS03035 -2.6 -5.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06340 -2.6 -10.3 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08605 -2.6 -7.7 flagellar protein E compare
MMP_RS02345 -2.6 -4.9 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01890 -2.6 -6.4 nucleotide sugar dehydrogenase compare
MMP_RS01905 -2.5 -17.1 glycosyltransferase compare
MMP_RS07730 -2.5 -2.6 pyruvate synthase subunit beta compare
MMP_RS01875 -2.5 -13.6 N-acetyltransferase compare
MMP_RS01925 -2.4 -12.0 DUF1616 domain-containing protein compare
MMP_RS06705 -2.4 -7.5 formate/nitrite transporter family protein compare
MMP_RS01335 -2.4 -4.5 prefoldin subunit beta compare
MMP_RS05250 -2.4 -2.5 NFYB/HAP3 family transcription factor subunit compare
MMP_RS01885 -2.4 -12.5 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS00120 -2.4 -6.4 LysR family transcriptional regulator compare
MMP_RS04870 -2.3 -4.2 TIGR02253 family HAD-type hydrolase compare
MMP_RS01880 -2.3 -8.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08370 -2.3 -1.2 cation:proton antiporter subunit C compare
MMP_RS07755 -2.3 -2.4 DUF555 domain-containing protein compare
MMP_RS07735 -2.3 -1.6 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07385 -2.2 -1.8 protein translocase SEC61 complex subunit gamma compare
MMP_RS04605 -2.2 -4.5 cobalt ECF transporter T component CbiQ compare
MMP_RS05550 -2.2 -1.3 cation:proton antiporter compare
MMP_RS08165 -2.2 -1.9 phosphoglycerate dehydrogenase compare
MMP_RS01840 -2.2 -9.8 TIGR00289 family protein compare
MMP_RS08445 -2.2 -5.9 DUF2099 family protein compare
MMP_RS01665 -2.2 -3.3 DUF2111 domain-containing protein compare
MMP_RS05540 -2.1 -2.6 hypothetical protein compare
MMP_RS02885 -2.1 -15.3 molybdopterin biosynthesis protein compare
MMP_RS01915 -2.1 -16.0 DUF354 domain-containing protein compare
MMP_RS07750 -2.1 -6.2 DUF357 domain-containing protein compare
MMP_RS02340 -2.1 -2.4 DNA-directed RNA polymerase subunit E'' compare
MMP_RS01910 -2.1 -11.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS05925 -2.1 -4.9 small nuclear ribonucleoprotein compare
MMP_RS00320 -2.1 -3.3 class I SAM-dependent methyltransferase compare
MMP_RS01895 -2.1 -14.5 flippase compare
MMP_RS08320 -2.0 -6.5 molybdopterin molybdotransferase MoeA compare
MMP_RS07090 -2.0 -9.7 tRNA (adenine-N1)-methyltransferase compare
MMP_RS07685 -2.0 -10.3 TIGR01212 family radical SAM protein compare
MMP_RS07350 -2.0 -2.1 preprotein translocase subunit Sec61beta compare
MMP_RS06035 -2.0 -10.2 glycosyltransferase family 2 protein compare
MMP_RS07710 -1.9 -9.1 cell division protein FtsZ compare
MMP_RS01700 -1.9 -1.1 dihydroxy-acid dehydratase compare
MMP_RS05815 -1.9 -1.3 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS03145 -1.9 -10.7 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS04720 -1.8 -3.3 DedA family protein compare
MMP_RS01365 -1.8 -3.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS03095 -1.8 -7.5 diphthine synthase compare
MMP_RS04695 -1.8 -9.3 selenide water dikinase SelD compare
MMP_RS01975 -1.8 -15.2 hypothetical protein compare
MMP_RS01970 -1.8 -13.0 TIGR04279 domain-containing protein compare
MMP_RS04875 -1.8 -5.8 energy-converting hydrogenase B subunit P compare
MMP_RS02875 -1.8 -8.9 chorismate pyruvate-lyase family protein compare
MMP_RS03140 -1.8 -10.6 hypothetical protein compare
MMP_RS06575 -1.8 -3.3 fluoride efflux transporter CrcB compare
MMP_RS07960 -1.8 -9.1 sugar phosphate isomerase/epimerase compare
MMP_RS07580 -1.8 -2.6 DUF356 domain-containing protein compare
MMP_RS05445 -1.7 -8.1 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS08645 -1.7 -7.1 UPF0179 family protein compare
MMP_RS08600 -1.7 -3.0 flagellar protein D compare
MMP_RS03700 -1.7 -6.4 sodium:proton antiporter compare
MMP_RS07330 -1.7 -12.5 membrane protein compare
MMP_RS01600 -1.7 -2.7 50S ribosomal protein L15e compare
MMP_RS05245 -1.7 -10.5 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS01920 -1.7 -13.5 glycosyltransferase family 2 protein compare
MMP_RS00130 -1.7 -1.9 nickel-responsive transcriptional regulator NikR compare
MMP_RS06110 -1.7 -4.0 ATP-dependent protease LonB compare
MMP_RS06310 -1.7 -4.2 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS05555 -1.7 -2.1 DUF4040 domain-containing protein compare
MMP_RS06215 -1.6 -4.6 30S ribosomal protein S6e compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community 1,3-Propanediol across organisms