Experiment set1IT063 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20625 -5.0 -3.5 3-isopropylmalate dehydratase compare
AO353_00430 -5.0 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_05705 -4.7 -9.6 oxidoreductase conserved
AO353_12115 -4.6 -3.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_13165 -4.6 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
AO353_13070 -4.6 -8.8 phosphoserine phosphatase compare
AO353_12090 -4.6 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12365 -4.5 -4.4 phosphoribosyl-AMP cyclohydrolase compare
AO353_02070 -4.5 -8.6 prephenate dehydratase compare
AO353_12070 -4.5 -9.5 imidazoleglycerol-phosphate dehydratase compare
AO353_05115 -4.4 -11.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_05715 -4.3 -12.2 lactate utilization protein B/C conserved
AO353_20665 -4.3 -11.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07230 -4.3 -18.8 anthranilate synthase compare
AO353_20635 -4.2 -15.3 3-isopropylmalate dehydrogenase compare
AO353_12520 -4.2 -13.7 glutamate synthase compare
AO353_22800 -4.1 -4.9 sulfite reductase compare
AO353_07220 -4.1 -9.2 anthranilate synthase compare
AO353_07210 -4.1 -7.4 indole-3-glycerol-phosphate synthase compare
AO353_02075 -4.1 -12.5 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08345 -4.1 -10.3 dihydroxy-acid dehydratase compare
AO353_09240 -4.0 -3.9 acetylglutamate kinase compare
AO353_12085 -4.0 -9.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_08185 -4.0 -12.7 methionine biosynthesis protein MetW compare
AO353_14505 -4.0 -15.0 ketol-acid reductoisomerase compare
AO353_12515 -4.0 -24.3 glutamate synthase compare
AO353_20695 -3.9 -7.9 O-succinylhomoserine sulfhydrylase compare
AO353_08180 -3.8 -15.4 homoserine O-acetyltransferase compare
AO353_08475 -3.8 -11.1 phosphoserine phosphatase compare
AO353_12075 -3.7 -10.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_14400 -3.7 -5.7 Fis family transcriptional regulator compare
AO353_12500 -3.7 -2.5 shikimate kinase compare
AO353_20620 -3.7 -7.1 isopropylmalate isomerase compare
AO353_10710 -3.7 -6.6 tryptophan synthase subunit beta compare
AO353_10025 -3.6 -17.9 pyruvate carboxylase subunit B compare
AO353_07515 -3.6 -3.5 transporter compare
AO353_10670 -3.6 -9.8 shikimate dehydrogenase compare
AO353_05110 -3.6 -14.1 histidinol dehydrogenase compare
AO353_10035 -3.5 -10.4 LysR family transcriptional regulator compare
AO353_19060 -3.5 -5.9 CysB family transcriptional regulator compare
AO353_04155 -3.5 -14.8 ornithine carbamoyltransferase compare
AO353_02685 -3.5 -5.3 phosphoribosylglycinamide formyltransferase compare
AO353_06495 -3.5 -6.7 gamma-glutamyl phosphate reductase compare
AO353_14495 -3.5 -14.3 acetolactate synthase 3 catalytic subunit compare
AO353_08685 -3.4 -11.6 N-acetylglutamate synthase compare
AO353_12360 -3.4 -11.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08510 -3.4 -6.8 3-phosphoglycerate dehydrogenase compare
AO353_05710 -3.4 -16.1 (Fe-S)-binding protein conserved
AO353_07155 -3.3 -10.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10030 -3.3 -13.4 pyruvate carboxylase subunit A compare
AO353_00310 -3.2 -12.8 transaldolase compare
AO353_15925 -3.2 -13.7 2-isopropylmalate synthase compare
AO353_14115 -3.2 -8.3 gamma-glutamyl kinase compare
AO353_07215 -3.2 -9.7 anthranilate phosphoribosyltransferase compare
AO353_07525 -3.2 -17.3 biotin synthase compare
AO353_04105 -3.1 -11.6 argininosuccinate synthase compare
AO353_09000 -3.0 -8.0 argininosuccinate lyase compare
AO353_14500 -2.9 -8.7 acetolactate synthase 3 regulatory subunit compare
AO353_08015 -2.8 -9.5 5,10-methylenetetrahydrofolate reductase compare
AO353_14370 -2.8 -8.6 glucose-6-phosphate isomerase compare
AO353_16940 -2.8 -8.7 deoxycytidine triphosphate deaminase compare
AO353_20540 -2.8 -8.3 aromatic amino acid aminotransferase compare
AO353_03580 -2.7 -5.1 ATP-dependent DNA helicase RuvB compare
AO353_08780 -2.6 -9.5 5-formyltetrahydrofolate cyclo-ligase compare
AO353_03020 -2.6 -9.4 arginine N-succinyltransferase compare
AO353_07510 -2.6 -11.9 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_07505 -2.6 -10.5 dethiobiotin synthetase compare
AO353_00825 -2.5 -5.6 porin compare
AO353_03015 -2.5 -6.4 arginine N-succinyltransferase compare
AO353_07520 -2.5 -12.8 8-amino-7-oxononanoate synthase compare
AO353_05700 -2.4 -10.5 L-lactate permease conserved
AO353_02710 -2.4 -13.6 (p)ppGpp synthetase compare
AO353_14595 -2.3 -10.2 carbonate dehydratase compare
AO353_10705 -2.3 -5.7 tryptophan synthase subunit alpha compare
AO353_08045 -2.2 -13.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_07355 -2.2 -7.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_13100 -2.1 -2.8 GTPase RsgA compare
AO353_11775 -2.1 -8.0 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_05420 -2.1 -2.8 peptide chain release factor 3 compare
AO353_05105 -2.1 -9.2 histidinol-phosphate aminotransferase compare
AO353_02720 -1.9 -6.9 cysteine synthase compare
AO353_09285 -1.7 -9.1 reactive intermediate/imine deaminase compare
AO353_08165 -1.7 -2.9 pyrroline-5-carboxylate reductase compare
AO353_04175 -1.7 -5.5 glycerol uptake facilitator GlpF compare
AO353_03585 -1.6 -2.2 ATP-dependent DNA helicase RuvA compare
AO353_15250 -1.6 -4.0 cytochrome B compare
AO353_02250 -1.6 -2.5 chorismate synthase compare
AO353_02810 -1.6 -7.5 histidine kinase compare
AO353_08885 -1.6 -12.0 polyphosphate kinase compare
AO353_20175 -1.5 -4.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_12105 -1.5 -6.7 peptidase S41 compare
AO353_10945 -1.5 -3.6 cytochrome C compare
AO353_00515 -1.5 -4.2 hypothetical protein compare
AO353_06040 -1.5 -4.1 exodeoxyribonuclease V subunit alpha compare
AO353_27650 -1.5 -4.0 cell division protein FtsK compare
AO353_02140 -1.5 -8.8 BolA family transcriptional regulator conserved
AO353_03590 -1.4 -4.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_14775 -1.4 -6.5 hypothetical protein compare
AO353_13140 -1.4 -5.3 tRNA dimethylallyltransferase compare
AO353_11530 -1.4 -7.6 diguanylate cyclase compare
AO353_19250 -1.3 -2.9 molybdenum cofactor guanylyltransferase compare
AO353_04810 -1.3 -2.2 hypothetical protein compare
AO353_06320 -1.3 -4.2 AsnC family transcriptional regulator compare
AO353_04355 -1.3 -2.1 homoserine dehydrogenase compare
AO353_19090 -1.3 -2.4 MarR family transcriptional regulator compare
AO353_00620 -1.3 -2.5 cytochrome C oxidase Cbb3 compare
AO353_15725 -1.3 -4.5 hypothetical protein compare
AO353_21625 -1.2 -2.6 Fe/S biogenesis protein NfuA compare
AO353_14405 -1.2 -7.8 ATPase compare
AO353_04565 -1.2 -5.3 nucleoid-associated protein compare
AO353_05690 -1.2 -3.4 SsrA-binding protein compare
AO353_10510 -1.2 -1.9 benzoate transporter compare
AO353_05080 -1.2 -7.6 sulfate adenylyltransferase compare
AO353_05075 -1.2 -7.8 adenylylsulfate kinase compare
AO353_12145 -1.2 -3.6 nitrogen regulation protein NR(I) compare
AO353_03615 -1.2 -3.3 cold-shock protein compare
AO353_01410 -1.2 -3.3 ribonuclease E compare
AO353_19295 -1.2 -1.8 hypothetical protein compare
AO353_19360 -1.1 -2.7 peroxiredoxin compare
AO353_00865 -1.1 -7.4 phosphoenolpyruvate synthase compare
AO353_16210 -1.1 -8.2 XRE family transcriptional regulator compare
AO353_08485 -1.1 -7.7 threonine dehydratase compare
AO353_11165 -1.1 -6.6 hypothetical protein compare
AO353_06050 -1.1 -5.1 exodeoxyribonuclease V subunit gamma compare
AO353_13925 -1.1 -2.5 XRE family transcriptional regulator compare
AO353_00650 -1.1 -2.3 cytochrome biogenesis protein compare
AO353_16805 -1.1 -4.7 recombinase RecA compare
AO353_15555 -1.1 -4.1 fumarylacetoacetase compare
AO353_05125 -1.1 -4.3 BolA family transcriptional regulator compare
AO353_06155 -1.1 -6.4 copper-transporting ATPase compare
AO353_06045 -1.1 -5.0 exodeoxyribonuclease V subunit beta compare
AO353_15260 -1.0 -4.7 stringent starvation protein A compare
AO353_12420 -1.0 -3.1 predicted FeS cluster maintenance protein (from data) compare
AO353_06725 -1.0 -2.0 hypothetical protein compare
AO353_00490 -1.0 -2.9 PasA protein compare
AO353_13640 -1.0 -2.1 histidine kinase compare
AO353_09050 -1.0 -3.3 recombinase XerC compare
AO353_19290 -1.0 -3.1 molybdenum cofactor sulfurase compare
AO353_02145 -1.0 -4.5 hypothetical protein compare
AO353_23495 -1.0 -2.5 SAM-dependent methyltransferase compare
AO353_14420 -0.9 -3.3 molecular chaperone DnaK compare
AO353_27000 -0.9 -2.0 hypothetical protein compare
AO353_20340 -0.9 -2.9 gamma-carboxygeranoyl-CoA hydratase compare
AO353_09860 -0.9 -5.8 histidine kinase compare
AO353_10445 -0.9 -1.5 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_02975 -0.9 -2.4 aspartate kinase compare
AO353_20185 -0.9 -4.4 DNA-binding protein compare
AO353_06160 -0.9 -3.5 transcriptional regulator compare
AO353_14395 -0.9 -3.2 poly(A) polymerase compare
AO353_00605 -0.9 -4.7 cytochrome C oxidase Cbb3 compare
AO353_03715 -0.9 -1.9 H-NS histone compare
AO353_09890 -0.9 -3.9 phosphate ABC transporter ATP-binding protein compare
AO353_10435 -0.9 -4.8 chromosome partitioning protein compare
AO353_10430 -0.8 -2.4 chromosome partitioning protein ParB compare
AO353_13605 -0.8 -5.3 oxidoreductase compare
AO353_02465 -0.8 -1.7 hypothetical protein compare
AO353_03275 -0.8 -2.1 LysR family transcriptional regulator compare
AO353_10930 -0.8 -4.4 DNA polymerase I compare
AO353_20630 -0.8 -4.2 SAM-dependent methyltransferase compare
AO353_01375 -0.8 -4.5 phosphate acyltransferase compare
AO353_20170 -0.8 -3.3 trigger factor compare
AO353_28700 -0.8 -2.3 hypothetical protein compare
AO353_10825 -0.8 -6.1 hypothetical protein compare
AO353_03630 -0.8 -5.8 porin compare
AO353_18540 -0.8 -2.2 pseudouridine synthase compare
AO353_21615 -0.8 -5.7 methionine synthase compare
AO353_02060 -0.8 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_20800 -0.8 -1.4 hypothetical protein compare
AO353_16440 -0.8 -2.2 ArsC family transcriptional regulator compare
AO353_21630 -0.8 -1.9 precorrin-4 C11-methyltransferase compare
AO353_19280 -0.8 -1.9 hypothetical protein compare
AO353_16845 -0.8 -4.7 LysR family transcriptional regulator compare
AO353_02320 -0.8 -4.0 allantoinase compare
AO353_07465 -0.8 -2.1 addiction module toxin RelE compare
AO353_20095 -0.7 -2.8 histidine kinase compare
AO353_19530 -0.7 -1.0 quinohemoprotein amine dehydrogenase compare
AO353_09040 -0.7 -1.2 diaminopimelate epimerase compare
AO353_28485 -0.7 -2.5 LysR family transcriptional regulator compare
AO353_18305 -0.7 -2.2 RNA helicase compare
AO353_22375 -0.7 -2.4 cytochrome c-550 PedF compare
AO353_08265 -0.7 -3.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_24700 -0.7 -2.5 peptidase compare
AO353_07315 -0.7 -1.6 rRNA methyltransferase compare
AO353_07730 -0.7 -2.4 hypothetical protein compare
AO353_13245 -0.7 -3.3 hypothetical protein compare
AO353_00955 -0.7 -2.3 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_01780 -0.7 -4.7 heat-shock protein Hsp90 compare
AO353_24275 -0.7 -1.8 transcriptional regulator compare
AO353_09475 -0.7 -2.5 hypothetical protein compare
AO353_22685 -0.7 -2.5 peroxidase compare
AO353_15665 -0.7 -2.6 chemotaxis protein CheY compare
AO353_18780 -0.7 -3.7 cobyrinic acid a,c-diamide synthase compare
AO353_10455 -0.7 -1.0 tRNA modification GTPase MnmE compare
AO353_12395 -0.6 -2.0 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_21055 -0.6 -2.3 glycosyl hydrolase compare
AO353_13225 -0.6 -1.7 50S ribosomal protein L9 compare
AO353_15170 -0.6 -1.8 cytochrome D ubiquinol oxidase subunit III compare
AO353_21805 -0.6 -2.6 peptidylprolyl isomerase compare
AO353_13200 -0.6 -4.6 exoribonuclease R compare
AO353_00660 -0.6 -1.8 transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium L-Lactate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium L-Lactate across organisms