Experiment set1IT063 for Rahnella sp. WP5

Compare to:

L-Glutamine nitrogen source; ShewMM media; shaking

200 most detrimental genes:

  gene name fitness t score description  
EX31_RS15095 +2.0 6.1 O-antigen assembly polymerase compare
EX31_RS09670 +1.2 2.8 bleomycin resistance protein compare
EX31_RS25415 +1.2 1.7 helix-turn-helix domain-containing protein compare
EX31_RS14550 +1.2 2.9 Trk system potassium transporter TrkH compare
EX31_RS02560 +1.2 2.2 hypothetical protein compare
EX31_RS10825 +1.1 2.0 hypothetical protein compare
EX31_RS09655 +1.0 2.3 membrane protein compare
EX31_RS10725 +1.0 1.5 plasmid maintenance protein CcdB compare
EX31_RS11560 +0.9 3.2 DUF1127 domain-containing protein compare
EX31_RS05000 +0.9 3.4 glycerol-3-phosphate dehydrogenase compare
EX31_RS24625 +0.9 2.4 DUF2766 domain-containing protein compare
EX31_RS09840 +0.9 1.9 L-ribulose-5-phosphate 4-epimerase compare
EX31_RS15655 +0.8 1.3 hypothetical protein compare
EX31_RS10975 +0.8 3.5 DUF2891 domain-containing protein compare
EX31_RS12535 +0.8 4.9 DnaA initiator-associating protein DiaA compare
EX31_RS16685 +0.8 2.5 3-hydroxyacyl-CoA dehydrogenase family protein compare
EX31_RS09080 +0.8 1.8 LysR family transcriptional regulator compare
EX31_RS25295 +0.8 2.0 GhoT/OrtT family toxin compare
EX31_RS07340 +0.8 1.0 stress-induced protein YchH compare
EX31_RS10180 +0.8 1.4 type II 3-dehydroquinate dehydratase compare
EX31_RS15085 +0.8 3.9 lipid III flippase WzxE compare
EX31_RS14270 +0.8 6.0 glycerol kinase GlpK compare
EX31_RS12240 +0.8 2.0 rod shape-determining protein MreC compare
EX31_RS15630 +0.7 2.5 YgdI/YgdR family lipoprotein compare
EX31_RS06270 +0.7 2.5 aldo/keto reductase compare
EX31_RS14240 +0.7 3.8 ATP-dependent protease subunit HslV compare
EX31_RS06915 +0.7 1.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS02915 +0.7 4.0 glycosyltransferase family 4 protein compare
EX31_RS25895 +0.7 2.1 DinI-like family protein compare
EX31_RS07825 +0.7 5.9 RNA polymerase sigma factor RpoS compare
EX31_RS02890 +0.7 5.3 lipopolysaccharide biosynthesis protein compare
EX31_RS07120 +0.7 2.6 LysR family transcriptional regulator compare
EX31_RS11525 +0.7 2.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS07430 +0.7 2.0 transporter substrate-binding domain-containing protein compare
EX31_RS06585 +0.7 1.1 DUF2501 domain-containing protein compare
EX31_RS00450 +0.7 1.5 methionine-R-sulfoxide reductase compare
EX31_RS07125 +0.7 2.4 LLM class flavin-dependent oxidoreductase compare
EX31_RS10595 +0.7 2.6 ribonuclease D compare
EX31_RS00930 +0.6 2.9 glycosyltransferase family 9 protein compare
EX31_RS09490 +0.6 1.1 hypothetical protein compare
EX31_RS01485 +0.6 1.5 helix-turn-helix domain-containing protein compare
EX31_RS11485 +0.6 3.2 ABC transporter ATP-binding protein compare
EX31_RS19795 +0.6 1.1 hypothetical protein compare
EX31_RS24890 +0.6 3.3 MFS transporter compare
EX31_RS13335 +0.6 1.0 transcriptional regulator compare
EX31_RS14005 +0.6 2.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
EX31_RS08000 +0.6 2.3 TonB system transport protein ExbD compare
EX31_RS18150 +0.6 1.8 MBL fold metallo-hydrolase compare
EX31_RS02270 +0.6 2.1 transcriptional regulator ChbR compare
EX31_RS13170 +0.6 3.6 precorrin-2 dehydrogenase compare
EX31_RS25725 +0.6 1.1 hypothetical protein compare
EX31_RS14265 +0.6 4.7 aquaporin family protein compare
EX31_RS17460 +0.6 1.9 putative selenoprotein compare
EX31_RS23875 +0.6 2.0 DUF1471 domain-containing protein compare
EX31_RS00635 +0.6 1.1 hypothetical protein compare
EX31_RS06660 +0.6 1.9 arabinose operon transcriptional regulator AraC compare
EX31_RS15525 +0.6 1.9 nitrogen assimilation transcriptional regulator compare
EX31_RS13815 +0.6 1.0 ribonuclease T compare
EX31_RS24550 +0.6 2.6 cupin domain-containing protein compare
EX31_RS12380 +0.5 2.1 PTS phosphocarrier protein NPr compare
EX31_RS01915 +0.5 1.9 hypothetical protein compare
EX31_RS22240 +0.5 4.1 trigger factor compare
EX31_RS18350 +0.5 2.6 phage tail protein compare
EX31_RS09725 +0.5 2.8 PQQ-dependent sugar dehydrogenase compare
EX31_RS25990 +0.5 1.8 hypothetical protein compare
EX31_RS23285 +0.5 2.5 hypothetical protein compare
EX31_RS18940 +0.5 2.4 glycosyltransferase family 61 protein compare
EX31_RS19395 +0.5 1.2 NADH-quinone oxidoreductase subunit J compare
EX31_RS11100 +0.5 2.1 oxidoreductase compare
EX31_RS24305 +0.5 2.6 VOC family protein compare
EX31_RS08390 +0.5 3.1 alpha,alpha-phosphotrehalase compare
EX31_RS14325 +0.5 4.2 envelope stress sensor histidine kinase CpxA compare
EX31_RS24945 +0.5 1.1 5S ribosomal RNA compare
EX31_RS18945 +0.5 1.8 CatB-related O-acetyltransferase compare
EX31_RS07415 +0.5 1.1 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS09310 +0.5 1.6 nitrate reductase molybdenum cofactor assembly chaperone compare
EX31_RS07075 +0.5 1.8 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
EX31_RS02540 +0.5 1.8 helix-turn-helix transcriptional regulator compare
EX31_RS17930 +0.5 2.8 cupin compare
EX31_RS09230 +0.5 1.6 LysR family transcriptional regulator compare
EX31_RS01195 +0.5 2.3 SDR family oxidoreductase compare
EX31_RS07685 +0.5 1.7 phage tail assembly protein compare
EX31_RS09920 +0.5 1.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
EX31_RS09715 +0.5 2.6 M20 family metallopeptidase compare
EX31_RS21145 +0.5 1.7 oxalurate catabolism protein HpxZ compare
EX31_RS19390 +0.5 2.0 NADH-quinone oxidoreductase subunit NuoK compare
EX31_RS13975 +0.5 2.7 EAL domain-containing protein compare
EX31_RS14245 +0.5 3.2 HslU--HslV peptidase ATPase subunit compare
EX31_RS07135 +0.5 0.9 hypothetical protein compare
EX31_RS11010 +0.5 0.9 DgsA anti-repressor MtfA compare
EX31_RS02215 +0.5 2.0 isopentenyl-diphosphate Delta-isomerase compare
EX31_RS05255 +0.5 1.2 hypothetical protein compare
EX31_RS07460 +0.5 1.8 NAD(P)-binding domain-containing protein compare
EX31_RS01645 +0.5 1.6 DUF1441 family protein compare
EX31_RS26085 +0.5 1.3 alpha/beta hydrolase compare
EX31_RS03220 +0.5 0.7 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS02780 +0.5 1.6 oligosaccharide flippase family protein compare
EX31_RS12660 +0.5 2.2 DedA family protein compare
EX31_RS10090 +0.5 1.6 NAD-dependent epimerase compare
EX31_RS23950 +0.5 2.8 ABC transporter permease compare
EX31_RS06955 +0.5 1.5 hypothetical protein compare
EX31_RS01695 +0.5 1.3 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS09265 +0.5 1.6 L-Ala-D/L-Glu epimerase compare
EX31_RS10340 +0.5 1.1 GNAT family N-acetyltransferase compare
EX31_RS01315 +0.5 2.1 Na/Pi cotransporter family protein compare
EX31_RS03330 +0.5 0.9 hypoxanthine phosphoribosyltransferase compare
EX31_RS13980 +0.5 1.2 lipoate--protein ligase A compare
EX31_RS09585 +0.5 1.0 flagellar biosynthetic protein FliO compare
EX31_RS02340 +0.5 1.9 hypothetical protein compare
EX31_RS16680 +0.5 1.1 enoyl-CoA hydratase compare
EX31_RS15150 +0.5 2.7 class I adenylate cyclase compare
EX31_RS17305 +0.5 2.3 copper homeostasis protein CutC compare
EX31_RS09565 +0.5 0.9 flagellar hook-length control protein FliK compare
EX31_RS18600 +0.4 1.9 ubiquinone-dependent pyruvate dehydrogenase compare
EX31_RS00455 +0.4 2.4 efflux transporter outer membrane subunit compare
EX31_RS09550 +0.4 0.6 flagellar assembly protein FliH compare
EX31_RS07565 +0.4 2.7 polyphenol oxidase compare
EX31_RS02895 +0.4 3.0 hypothetical protein compare
EX31_RS01660 +0.4 1.7 hypothetical protein compare
EX31_RS02365 +0.4 0.8 hypothetical protein compare
EX31_RS06690 +0.4 1.5 hypothetical protein compare
EX31_RS02625 +0.4 1.1 hypothetical protein compare
EX31_RS02695 +0.4 2.0 YggT family protein compare
EX31_RS21375 +0.4 1.5 fimbrial protein compare
EX31_RS10670 +0.4 3.6 murein DD-endopeptidase MepM compare
EX31_RS12325 +0.4 1.7 cytochrome b562 compare
EX31_RS06865 +0.4 1.7 pyridoxal phosphate-dependent aminotransferase compare
EX31_RS12865 +0.4 3.2 fimbrial protein compare
EX31_RS12350 +0.4 1.6 DUF4311 domain-containing protein compare
EX31_RS11480 +0.4 2.6 ABC transporter permease compare
EX31_RS10605 +0.4 1.8 Slp family lipoprotein compare
EX31_RS07505 +0.4 1.8 ABC transporter permease compare
EX31_RS24670 +0.4 1.4 peptidoglycan editing factor PgeF compare
EX31_RS01790 +0.4 1.5 excisionase compare
EX31_RS06735 +0.4 1.0 HutD family protein compare
EX31_RS14435 +0.4 2.4 glycosyltransferase family 4 protein compare
EX31_RS01840 +0.4 1.4 PAS domain-containing protein compare
EX31_RS23155 +0.4 2.2 zinc ribbon-containing protein compare
EX31_RS23030 +0.4 1.2 transcription antiterminator/RNA stability regulator CspE compare
EX31_RS19845 +0.4 0.9 DNA polymerase II small subunit compare
EX31_RS02390 +0.4 0.9 steroid Delta-isomerase compare
EX31_RS02885 +0.4 2.4 glycosyltransferase family 2 protein compare
EX31_RS09625 +0.4 1.6 putrescine ABC transporter ATP-binding subunit PotG compare
EX31_RS01280 +0.4 1.0 SgcJ/EcaC family oxidoreductase compare
EX31_RS14415 +0.4 2.2 sugar glycosyltransferase compare
EX31_RS04320 +0.4 0.9 hypothetical protein compare
EX31_RS06820 +0.4 1.8 amino acid ABC transporter permease compare
EX31_RS09600 +0.4 1.0 flagellar type III secretion system protein FliR compare
EX31_RS01650 +0.4 1.4 hypothetical protein compare
EX31_RS13745 +0.4 1.1 pyridoxal kinase PdxY compare
EX31_RS20315 +0.4 1.7 two-component system response regulator BaeR compare
EX31_RS18430 +0.4 2.3 hypothetical protein compare
EX31_RS02900 +0.4 2.3 glycosyltransferase compare
EX31_RS04475 +0.4 2.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
EX31_RS10755 +0.4 1.9 glycoside hydrolase family 3 protein compare
EX31_RS10380 +0.4 1.3 DUF4440 domain-containing protein compare
EX31_RS11045 +0.4 0.9 NADP-dependent oxidoreductase compare
EX31_RS25995 +0.4 1.6 IS3 family transposase compare
EX31_RS16960 +0.4 1.8 ABC transporter substrate-binding protein compare
EX31_RS00940 +0.4 1.7 manganese efflux pump MntP compare
EX31_RS23810 +0.4 1.8 hypothetical protein compare
EX31_RS01580 +0.4 1.1 phage tail protein compare
EX31_RS00770 +0.4 2.3 LysR family transcriptional regulator compare
EX31_RS02225 +0.4 1.4 hypothetical protein compare
EX31_RS06795 +0.4 1.4 ABC transporter ATP-binding protein compare
EX31_RS01785 +0.4 1.3 YfdQ family protein compare
EX31_RS26065 +0.4 0.9 IS630 family transposase compare
EX31_RS17015 +0.4 1.8 sugar ABC transporter substrate-binding protein compare
EX31_RS08205 +0.4 2.7 hypothetical protein compare
EX31_RS23540 +0.4 1.6 hypothetical protein compare
EX31_RS01815 +0.4 1.6 (S)-acetoin forming diacetyl reductase compare
EX31_RS23945 +0.4 1.8 ABC transporter ATP-binding protein compare
EX31_RS10620 +0.4 0.9 RidA family protein compare
EX31_RS12880 +0.4 2.9 methionine ABC transporter ATP-binding protein MetN compare
EX31_RS01330 +0.4 1.2 porin compare
EX31_RS00575 +0.4 1.5 DUF554 domain-containing protein compare
EX31_RS01255 +0.4 0.8 Crp/Fnr family transcriptional regulator compare
EX31_RS15545 +0.4 1.9 amino acid ABC transporter permease compare
EX31_RS22440 +0.4 1.6 hypothetical protein compare
EX31_RS09095 +0.4 1.3 GNAT family N-acetyltransferase compare
EX31_RS02110 +0.4 1.0 L-rhamnose mutarotase compare
EX31_RS10020 +0.4 0.7 YciI family protein compare
EX31_RS20405 +0.4 1.4 class I SAM-dependent methyltransferase compare
EX31_RS25665 +0.4 0.8 DUF2502 domain-containing protein compare
EX31_RS11150 +0.4 1.2 efflux transporter periplasmic adaptor subunit compare
EX31_RS09630 +0.4 1.5 spermidine/putrescine ABC transporter substrate-binding protein PotF compare
EX31_RS02960 +0.4 1.7 hypothetical protein compare
EX31_RS01565 +0.4 1.6 tail assembly protein compare
EX31_RS11050 +0.4 2.4 oxidoreductase compare
EX31_RS14230 +0.4 2.9 DNA-binding transcriptional regulator CytR compare
EX31_RS01780 +0.4 1.0 hypothetical protein compare
EX31_RS09345 +0.4 2.2 ABC transporter substrate-binding protein compare
EX31_RS08050 +0.4 2.3 cell division protein FtsP compare
EX31_RS13765 +0.4 2.4 anhydro-N-acetylmuramic acid kinase compare
EX31_RS15560 +0.4 2.0 hypothetical protein compare
EX31_RS23735 +0.4 1.7 uridine diphosphate-N-acetylglucosamine-binding protein YvcK compare
EX31_RS07145 +0.4 1.9 serine hydrolase compare
EX31_RS09285 +0.4 1.0 hypothetical protein compare
EX31_RS11900 +0.4 1.4 YitT family protein compare
EX31_RS09190 +0.4 0.9 ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source L-Glutamine across organisms