Experiment set1IT063 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Sodium perchlorate monohydrate 6.25 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS18260 +0.8 1.5 hypothetical protein compare
CA265_RS01560 +0.7 2.4 circadian clock protein KaiB compare
CA265_RS20695 +0.7 1.7 hypothetical protein compare
CA265_RS03125 +0.7 2.4 hypothetical protein compare
CA265_RS24940 +0.7 2.7 hypothetical protein compare
CA265_RS23035 +0.7 2.4 four-helix bundle copper-binding protein compare
CA265_RS17315 +0.6 1.3 hypothetical protein compare
CA265_RS18495 +0.6 1.7 hypothetical protein compare
CA265_RS10540 +0.6 1.7 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS13200 +0.6 3.4 phosphatase PAP2 family protein compare
CA265_RS22805 +0.6 3.8 glycosyl transferase compare
CA265_RS24815 +0.6 2.0 hypothetical protein compare
CA265_RS22800 +0.6 4.0 glycosyl transferase compare
CA265_RS15835 +0.5 1.7 antibiotic biosynthesis monooxygenase compare
CA265_RS17025 +0.5 1.2 hypothetical protein compare
CA265_RS10385 +0.5 1.6 hypothetical protein compare
CA265_RS03280 +0.5 2.3 hypothetical protein compare
CA265_RS19620 +0.5 2.7 hypothetical protein compare
CA265_RS07755 +0.5 0.8 hypothetical protein compare
CA265_RS18115 +0.5 3.1 gliding motility protein GldN compare
CA265_RS01320 +0.5 0.9 hypothetical protein compare
CA265_RS09725 +0.5 4.5 tolB protein precursor compare
CA265_RS24355 +0.5 1.5 transcriptional regulator compare
CA265_RS17940 +0.5 2.0 hypothetical protein compare
CA265_RS20315 +0.5 4.0 hypothetical protein compare
CA265_RS19050 +0.5 1.5 acylphosphatase compare
CA265_RS00335 +0.5 0.9 hypothetical protein compare
CA265_RS18275 +0.5 1.3 pyrophosphatase compare
CA265_RS19030 +0.5 3.0 hypothetical protein compare
CA265_RS21395 +0.5 1.4 hypothetical protein compare
CA265_RS03715 +0.5 1.4 hypothetical protein compare
CA265_RS15690 +0.5 2.7 NADPH-dependent FMN reductase compare
CA265_RS19990 +0.5 1.6 YtxH domain-containing protein compare
CA265_RS23120 +0.5 1.4 hypothetical protein compare
CA265_RS09265 +0.5 2.7 hypothetical protein compare
CA265_RS05395 +0.5 2.1 heme oxygenase compare
CA265_RS09050 +0.4 2.9 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS08445 +0.4 0.9 endonuclease compare
CA265_RS00515 +0.4 1.3 hypothetical protein compare
CA265_RS11940 +0.4 1.8 hypothetical protein compare
CA265_RS16105 +0.4 0.9 hypothetical protein compare
CA265_RS25185 +0.4 1.0 glycine dehydrogenase (aminomethyl-transferring) compare
CA265_RS15085 +0.4 2.7 hypothetical protein compare
CA265_RS23265 +0.4 1.4 iron-binding protein compare
CA265_RS23090 +0.4 2.1 transcriptional regulator compare
CA265_RS21030 +0.4 2.7 hypothetical protein compare
CA265_RS18120 +0.4 3.3 gliding motility protein GldM compare
CA265_RS21565 +0.4 0.8 cold-shock protein compare
CA265_RS02655 +0.4 1.7 hypothetical protein compare
CA265_RS00445 +0.4 2.9 alpha/beta hydrolase compare
CA265_RS06885 +0.4 0.8 hypothetical protein compare
CA265_RS19535 +0.4 2.5 hypothetical protein compare
CA265_RS14825 +0.4 1.0 outer membrane protein assembly factor BamD compare
CA265_RS16145 +0.4 0.9 PIN domain nuclease compare
CA265_RS00585 +0.4 3.4 translocation/assembly module TamB compare
CA265_RS21445 +0.4 2.6 exodeoxyribonuclease III compare
CA265_RS16775 +0.4 2.0 transcriptional initiation protein Tat compare
CA265_RS08995 +0.4 3.1 TonB-dependent receptor compare
CA265_RS06585 +0.4 2.3 hypothetical protein compare
CA265_RS21470 +0.4 2.1 elongation factor P compare
CA265_RS12780 +0.4 0.8 hypothetical protein compare
CA265_RS05205 +0.4 2.4 hypothetical protein compare
CA265_RS20700 +0.4 2.1 plasmid transfer protein compare
CA265_RS07515 +0.4 2.5 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS18125 +0.4 2.7 gliding motility protein GldL compare
CA265_RS02105 +0.4 1.9 hypothetical protein compare
CA265_RS20320 +0.4 3.3 hypothetical protein compare
CA265_RS09935 +0.4 1.4 hypothetical protein compare
CA265_RS17095 +0.4 1.9 SAM-dependent methyltransferase compare
CA265_RS03290 +0.4 2.6 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS09690 +0.4 1.4 hypothetical protein compare
CA265_RS19740 +0.4 1.8 gliding motility lipoprotein GldD compare
CA265_RS09195 +0.4 2.4 Fis family transcriptional regulator compare
CA265_RS23235 +0.4 1.3 transcriptional regulator compare
CA265_RS11125 +0.4 1.8 hypothetical protein compare
CA265_RS22790 +0.4 2.0 hypothetical protein compare
CA265_RS03675 +0.4 1.6 hypothetical protein compare
CA265_RS03260 +0.3 2.6 multidrug ABC transporter ATP-binding protein compare
CA265_RS04100 +0.3 1.6 uroporphyrinogen-III C-methyltransferase compare
CA265_RS03295 +0.3 2.7 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS22985 +0.3 2.7 helicase SNF2 compare
CA265_RS13500 +0.3 1.5 hypothetical protein compare
CA265_RS13940 +0.3 1.4 hypothetical protein compare
CA265_RS09810 +0.3 2.4 glucose-6-phosphate dehydrogenase compare
CA265_RS13970 +0.3 3.0 hypothetical protein compare
CA265_RS04645 +0.3 2.6 cation transporter compare
CA265_RS20750 +0.3 1.0 hypothetical protein compare
CA265_RS09035 +0.3 1.7 anti-anti-sigma factor compare
CA265_RS19485 +0.3 1.3 hypothetical protein compare
CA265_RS20880 +0.3 1.8 hypothetical protein compare
CA265_RS04635 +0.3 3.0 CusA/CzcA family heavy metal efflux RND transporter compare
CA265_RS13330 +0.3 1.8 hypothetical protein compare
CA265_RS11905 +0.3 1.4 hypothetical protein compare
CA265_RS06520 +0.3 2.1 hypothetical protein compare
CA265_RS22355 +0.3 2.0 translation initiation factor compare
CA265_RS10480 +0.3 1.4 hypothetical protein compare
CA265_RS05440 +0.3 2.2 hypothetical protein compare
CA265_RS15875 +0.3 1.3 hypothetical protein compare
CA265_RS24530 +0.3 2.0 hypothetical protein compare
CA265_RS21000 +0.3 1.8 ribosome silencing factor compare
CA265_RS03255 +0.3 2.4 glycerophosphodiester phosphodiesterase compare
CA265_RS19410 +0.3 0.9 hypothetical protein compare
CA265_RS25150 +0.3 1.3 hypothetical protein compare
CA265_RS14935 +0.3 2.8 hypothetical protein compare
CA265_RS17420 +0.3 1.5 glyoxalase compare
CA265_RS02795 +0.3 0.7 hypothetical protein compare
CA265_RS16820 +0.3 1.1 type I methionyl aminopeptidase compare
CA265_RS17220 +0.3 1.8 NAD(P)H-dependent oxidoreductase compare
CA265_RS18130 +0.3 2.5 gliding motility-associated lipoprotein compare
CA265_RS17560 +0.3 2.5 peptidylprolyl isomerase compare
CA265_RS18530 +0.3 0.9 aspartate aminotransferase family protein compare
CA265_RS15650 +0.3 1.9 hypothetical protein compare
CA265_RS03665 +0.3 1.4 hypothetical protein compare
CA265_RS11995 +0.3 1.1 RNA polymerase subunit sigma compare
CA265_RS02825 +0.3 1.2 hypothetical protein compare
CA265_RS10400 +0.3 1.5 histone H1 compare
CA265_RS18255 +0.3 1.2 hypothetical protein compare
CA265_RS19705 +0.3 1.6 tRNA-binding protein compare
CA265_RS17115 +0.3 1.1 arsenate reductase compare
CA265_RS20950 +0.3 1.9 hypothetical protein compare
CA265_RS15530 +0.3 1.3 septal ring lytic transglycosylase RlpA family lipoprotein compare
CA265_RS05670 +0.3 1.8 hypothetical protein compare
CA265_RS19515 +0.3 1.5 aldehyde dehydrogenase compare
CA265_RS15280 +0.3 1.9 glycine C-acetyltransferase compare
CA265_RS09075 +0.3 1.8 hypothetical protein compare
CA265_RS04560 +0.3 0.9 hypothetical protein compare
CA265_RS21390 +0.3 1.8 metal-dependent hydrolase compare
CA265_RS13555 +0.3 1.3 hypothetical protein compare
CA265_RS04315 +0.3 1.9 hypothetical protein compare
CA265_RS12960 +0.3 2.0 DUF4440 domain-containing protein compare
CA265_RS09850 +0.3 1.2 hypothetical protein compare
CA265_RS13960 +0.3 1.6 hypothetical protein compare
CA265_RS03345 +0.3 1.8 hypothetical protein compare
CA265_RS19465 +0.3 1.2 protein tyrosine phosphatase compare
CA265_RS18950 +0.3 1.7 transcriptional regulator compare
CA265_RS16460 +0.3 2.0 hypothetical protein compare
CA265_RS24220 +0.3 1.5 hypothetical protein compare
CA265_RS04070 +0.3 2.4 IucA/IucC family protein compare
CA265_RS04805 +0.3 2.2 XynC protein compare
CA265_RS21945 +0.3 1.7 DeoR family transcriptional regulator compare
CA265_RS18030 +0.3 1.6 hypothetical protein compare
CA265_RS18725 +0.3 1.4 short-chain dehydrogenase compare
CA265_RS18780 +0.3 1.2 YicC family protein compare
CA265_RS15890 +0.3 1.8 DNA-binding protein compare
CA265_RS17285 +0.3 0.9 hypothetical protein compare
CA265_RS12800 +0.3 1.4 NAD(P)H-dependent oxidoreductase compare
CA265_RS08560 +0.3 2.0 ABC transporter substrate-binding protein compare
CA265_RS25460 +0.3 1.8 methylmalonyl-CoA mutase compare
CA265_RS21315 +0.3 1.4 hypothetical protein compare
CA265_RS16970 +0.3 2.0 hypothetical protein compare
CA265_RS23985 +0.3 2.0 gliding motility lipoprotein GldB compare
CA265_RS06655 +0.3 1.4 hypothetical protein compare
CA265_RS22720 +0.3 0.7 hypothetical protein compare
CA265_RS11610 +0.3 0.4 RNA-binding protein S4 compare
CA265_RS18985 +0.3 1.3 hypothetical protein compare
CA265_RS04115 +0.3 1.2 sulfate adenylyltransferase compare
CA265_RS16735 +0.3 1.9 hypothetical protein compare
CA265_RS25385 +0.3 1.2 Txe/YoeB family addiction module toxin compare
CA265_RS04740 +0.3 2.3 carboxymethylenebutenolidase compare
CA265_RS15200 +0.3 1.2 hypothetical protein compare
CA265_RS21405 +0.3 1.8 4,5-DOPA dioxygenase extradiol compare
CA265_RS19910 +0.3 1.7 GDSL family lipase compare
CA265_RS02110 +0.3 1.0 hypothetical protein compare
CA265_RS21580 +0.3 1.1 QacE family quaternary ammonium compound efflux SMR transporter compare
CA265_RS18990 +0.3 2.6 cell surface protein SprA compare
CA265_RS06325 +0.3 1.1 DNA starvation/stationary phase protection protein compare
CA265_RS11135 +0.3 2.1 heparan N-sulfatase compare
CA265_RS24005 +0.3 1.3 OsmC family peroxiredoxin compare
CA265_RS19165 +0.3 0.9 serine hydroxymethyltransferase compare
CA265_RS07470 +0.3 1.5 hypothetical protein compare
CA265_RS01630 +0.3 2.0 glycosyl transferase family 2 compare
CA265_RS25265 +0.3 1.1 hypothetical protein compare
CA265_RS04120 +0.3 2.0 sulfate adenylyltransferase compare
CA265_RS25050 +0.3 1.2 hypothetical protein compare
CA265_RS22450 +0.3 0.8 GntR family transcriptional regulator compare
CA265_RS19615 +0.3 1.2 metal-dependent hydrolase compare
CA265_RS25200 +0.3 1.9 hypothetical protein compare
CA265_RS23635 +0.3 2.3 gliding motility lipoprotein GldJ compare
CA265_RS13850 +0.3 1.9 alpha-glucosidase compare
CA265_RS10430 +0.3 1.6 hypothetical protein compare
CA265_RS18090 +0.3 2.3 gliding motility protein compare
CA265_RS04885 +0.3 0.5 tRNA-Gly compare
CA265_RS24450 +0.3 1.5 hypothetical protein compare
CA265_RS12535 +0.3 1.8 RNA polymerase compare
CA265_RS21555 +0.3 1.1 hypothetical protein compare
CA265_RS00830 +0.3 1.1 hypothetical protein compare
CA265_RS25395 +0.3 1.1 cysteine hydrolase compare
CA265_RS04650 +0.3 1.8 two-component sensor histidine kinase compare
CA265_RS01770 +0.3 1.6 hypothetical protein compare
CA265_RS12965 +0.3 1.8 NAD-dependent dehydratase compare
CA265_RS01225 +0.3 1.4 hypothetical protein compare
CA265_RS14195 +0.3 1.6 hypothetical protein compare
CA265_RS24480 +0.3 1.0 hypothetical protein compare
CA265_RS18485 +0.3 1.4 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS08150 +0.3 1.5 peptidase compare
CA265_RS12750 +0.3 1.7 hypothetical protein compare
CA265_RS06930 +0.3 1.2 hypothetical protein compare
CA265_RS04710 +0.3 1.1 hypothetical protein compare
CA265_RS12905 +0.3 1.5 hypothetical protein compare
CA265_RS23305 +0.3 0.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in stress experiments

For stress Sodium perchlorate monohydrate across organisms