Experiment set1IT063 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 5 generations

200 most important genes:

  gene name fitness t score description  
MMP_RS06700 -5.6 -17.6 hypothetical protein compare
MMP_RS01175 -5.2 -8.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS01985 -4.9 -11.9 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS08460 -4.1 -4.8 proteasome-activating nucleotidase compare
MMP_RS08635 -4.0 -4.1 UbiA family prenyltransferase compare
MMP_RS08435 -3.9 -4.6 Era-like GTP-binding protein compare
MMP_RS07005 -3.9 -1.5 4Fe-4S binding protein compare
MMP_RS08790 -3.8 -5.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS03205 -3.7 -3.2 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS08720 -3.7 -4.2 4Fe-4S binding protein compare
MMP_RS07445 -3.6 -13.5 helix-turn-helix domain-containing protein compare
MMP_RS08650 -3.4 -4.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06295 -3.3 -12.6 methanogenesis marker 14 protein compare
MMP_RS04090 -3.3 -4.1 hypothetical protein compare
MMP_RS01500 -3.2 -3.2 CBS domain-containing protein compare
MMP_RS06680 -3.2 -24.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS02135 -3.1 -7.9 DUF5612 domain-containing protein compare
MMP_RS01385 -3.1 -1.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS03315 -3.0 -2.6 ferrous iron transport protein A compare
MMP_RS01220 -2.9 -12.0 hypothetical protein compare
MMP_RS07380 -2.9 -4.0 transcription elongation factor Spt5 compare
MMP_RS04780 -2.9 -7.1 ribonuclease P compare
MMP_RS00305 -2.9 -2.6 phosphoribosyl-ATP diphosphatase compare
MMP_RS06630 -2.9 -2.4 UPF0058 family protein compare
MMP_RS01610 -2.9 -6.6 hypothetical protein compare
MMP_RS06685 -2.8 -18.7 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS08745 -2.8 -9.8 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS00685 -2.8 -6.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS05515 -2.8 -10.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS07525 -2.8 -8.9 4Fe-4S binding protein compare
MMP_RS03015 -2.8 -12.1 GTP 3' 8-cyclase MoaA compare
MMP_RS06625 -2.7 -4.1 DNA primase compare
MMP_RS02280 -2.7 -2.1 DUF211 domain-containing protein compare
MMP_RS02240 -2.7 -5.5 methanogenesis marker 7 protein compare
MMP_RS02355 -2.7 -4.2 30S ribosomal protein S27ae compare
MMP_RS07635 -2.7 -11.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS02195 -2.6 -5.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06355 -2.6 -7.1 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06475 -2.6 -8.2 FAD-dependent oxidoreductase compare
MMP_RS00300 -2.6 -1.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01265 -2.6 -5.0 hypothetical protein compare
MMP_RS07075 -2.6 -7.4 phosphomannomutase/phosphoglucomutase compare
MMP_RS06105 -2.6 -11.8 hydrogenase maturation peptidase HycI compare
MMP_RS06350 -2.6 -11.7 HesA/MoeB/ThiF family protein compare
MMP_RS05430 -2.5 -3.3 TIGR00288 family NYN domain-containing protein compare
MMP_RS01225 -2.5 -10.6 DUF5379 domain-containing protein compare
MMP_RS01955 -2.5 -6.4 hypothetical protein compare
MMP_RS02145 -2.5 -11.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS07390 -2.4 -2.8 cell division protein FtsZ compare
MMP_RS07435 -2.4 -3.9 GMP synthase subunit A compare
MMP_RS05920 -2.4 -1.3 50S ribosomal protein L37e compare
MMP_RS06730 -2.4 -4.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS01325 -2.4 -4.5 dihydroneopterin aldolase family protein compare
MMP_RS07845 -2.4 -4.0 LL-diaminopimelate aminotransferase compare
MMP_RS01960 -2.4 -2.2 hypothetical protein compare
MMP_RS08210 -2.3 -4.2 phosphatidylglycerophosphatase A compare
MMP_RS00515 -2.3 -2.3 DUF655 domain-containing protein compare
MMP_RS06670 -2.3 -10.1 glucose-6-phosphate isomerase compare
MMP_RS04585 -2.3 -10.9 AIR synthase related protein compare
MMP_RS07605 -2.3 -8.0 diadenylate cyclase compare
MMP_RS03640 -2.3 -6.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03025 -2.3 -8.3 molybdenum cofactor guanylyltransferase compare
MMP_RS03600 -2.2 -3.2 triose-phosphate isomerase compare
MMP_RS06270 -2.2 -7.4 TIGR00300 family protein compare
MMP_RS06925 -2.2 -4.5 ribonuclease VapC4 compare
MMP_RS02800 -2.2 -8.1 nucleotidyltransferase domain-containing protein compare
MMP_RS07545 -2.2 -2.4 HTH domain-containing protein compare
MMP_RS00335 -2.2 -10.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS05250 -2.2 -2.8 NFYB/HAP3 family transcription factor subunit compare
MMP_RS07350 -2.2 -4.4 preprotein translocase subunit Sec61beta compare
MMP_RS01755 -2.1 -2.5 DUF2097 domain-containing protein compare
MMP_RS03445 -2.1 -2.3 methanogenesis marker 17 protein compare
MMP_RS06130 -2.1 -6.0 peptidylprolyl isomerase compare
MMP_RS05640 -2.1 -9.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS08715 -2.1 -3.3 formylmethanofuran dehydrogenase subunit B compare
MMP_RS00110 -2.1 -3.8 hypothetical protein compare
MMP_RS01900 -2.1 -15.4 hypothetical protein compare
MMP_RS08300 -2.1 -2.4 metal-sulfur cluster assembly factor compare
MMP_RS05555 -2.1 -2.9 DUF4040 domain-containing protein compare
MMP_RS06400 -2.0 -3.4 4Fe-4S binding protein compare
MMP_RS03435 -2.0 -2.3 ketol-acid reductoisomerase compare
MMP_RS06315 -2.0 -2.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS01380 -2.0 -6.8 PHP domain-containing protein compare
MMP_RS01905 -2.0 -16.0 glycosyltransferase compare
MMP_RS00695 -2.0 -2.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS04685 -2.0 -4.6 DUF126 domain-containing protein compare
MMP_RS02165 -2.0 -12.4 tRNA-dihydrouridine synthase compare
MMP_RS06285 -2.0 -4.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04890 -2.0 -1.6 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS06020 -1.9 -5.6 archaeoflavoprotein AfpA compare
MMP_RS00810 -1.9 -10.6 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS07600 -1.9 -3.9 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01020 -1.9 -2.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01005 -1.9 -2.9 riboflavin synthase compare
MMP_RS05540 -1.9 -3.8 hypothetical protein compare
MMP_RS06720 -1.9 -8.9 response regulator transcription factor compare
MMP_RS03035 -1.9 -6.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06940 -1.8 -4.0 polyprenyl diphosphate synthase compare
MMP_RS06120 -1.8 -3.9 UPF0147 family protein compare
MMP_RS05345 -1.8 -7.5 hypothetical protein compare
MMP_RS01925 -1.8 -11.5 DUF1616 domain-containing protein compare
MMP_RS06715 -1.8 -13.4 cache domain-containing protein compare
MMP_RS06230 -1.8 -2.9 helix-turn-helix domain-containing protein compare
MMP_RS03155 -1.8 -8.0 precorrin-6A reductase compare
MMP_RS03390 -1.8 -7.7 malate dehydrogenase compare
MMP_RS08440 -1.8 -6.5 cell division protein SepF compare
MMP_RS01875 -1.8 -13.5 N-acetyltransferase compare
MMP_RS01795 -1.8 -2.8 methanogenesis marker 6 protein compare
MMP_RS01915 -1.8 -13.5 DUF354 domain-containing protein compare
MMP_RS01910 -1.7 -11.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS06895 -1.7 -2.8 selenocysteine-specific translation elongation factor compare
MMP_RS01800 -1.7 -6.0 TIGR00303 family protein compare
MMP_RS04710 -1.7 -2.7 hypothetical protein compare
MMP_RS08165 -1.7 -2.9 phosphoglycerate dehydrogenase compare
MMP_RS05845 -1.7 -3.1 tRNA-intron lyase compare
MMP_RS06345 -1.7 -9.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS03580 -1.7 -5.1 signal recognition particle-docking protein FtsY compare
MMP_RS01885 -1.7 -9.7 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS06885 -1.7 -3.6 50S ribosome-binding GTPase compare
MMP_RS00985 -1.7 -6.7 CDC48 family AAA ATPase compare
MMP_RS08605 -1.6 -8.7 flagellar protein E compare
MMP_RS01545 -1.6 -2.0 CBS domain-containing protein compare
MMP_RS03400 -1.6 -4.7 archease compare
MMP_RS06980 -1.6 -9.4 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS01880 -1.6 -9.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS03960 -1.6 -1.7 hypothetical protein compare
MMP_RS00750 -1.6 -2.7 fumarate hydratase compare
MMP_RS04615 -1.6 -5.2 PDGLE domain-containing protein compare
MMP_RS01445 -1.6 -7.6 hypothetical protein compare
MMP_RS04775 -1.6 -5.2 adenosylhomocysteinase compare
MMP_RS01830 -1.6 -2.6 tRNA-Val compare
MMP_RS08840 -1.5 -7.8 class I SAM-dependent methyltransferase compare
MMP_RS01890 -1.5 -7.7 nucleotide sugar dehydrogenase compare
MMP_RS07750 -1.5 -6.3 DUF357 domain-containing protein compare
MMP_RS01700 -1.5 -1.2 dihydroxy-acid dehydratase compare
MMP_RS03305 -1.5 -9.0 winged helix-turn-helix domain-containing protein compare
MMP_RS01895 -1.5 -11.6 flippase compare
MMP_RS00320 -1.5 -3.3 class I SAM-dependent methyltransferase compare
MMP_RS07955 -1.5 -5.6 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS07685 -1.5 -9.5 TIGR01212 family radical SAM protein compare
MMP_RS08860 -1.5 -5.0 MinD/ParA family protein compare
MMP_RS07200 -1.4 -6.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07630 -1.4 -2.1 ATP-binding cassette domain-containing protein compare
MMP_RS08595 -1.4 -1.7 flagellar protein C compare
MMP_RS06865 -1.4 -1.9 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS08070 -1.4 -5.6 DUF2096 domain-containing protein compare
MMP_RS06705 -1.4 -6.1 formate/nitrite transporter family protein compare
MMP_RS07755 -1.4 -2.5 DUF555 domain-containing protein compare
MMP_RS04605 -1.4 -4.7 cobalt ECF transporter T component CbiQ compare
MMP_RS05815 -1.4 -2.7 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS02345 -1.4 -3.7 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS05925 -1.4 -3.1 small nuclear ribonucleoprotein compare
MMP_RS07385 -1.4 -2.1 protein translocase SEC61 complex subunit gamma compare
MMP_RS06215 -1.4 -3.6 30S ribosomal protein S6e compare
MMP_RS00620 -1.4 -7.4 4Fe-4S binding protein compare
MMP_RS09020 -1.4 -2.1 hypothetical protein compare
MMP_RS02130 -1.4 -3.7 zinc metalloprotease HtpX compare
MMP_RS02885 -1.4 -10.4 molybdopterin biosynthesis protein compare
MMP_RS01365 -1.4 -2.7 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS08645 -1.4 -8.6 UPF0179 family protein compare
MMP_RS03475 -1.4 -1.2 hypothetical protein compare
MMP_RS05550 -1.3 -1.2 cation:proton antiporter compare
MMP_RS04870 -1.3 -4.6 TIGR02253 family HAD-type hydrolase compare
MMP_RS03140 -1.3 -10.1 hypothetical protein compare
MMP_RS01975 -1.3 -11.3 hypothetical protein compare
MMP_RS00120 -1.3 -8.3 LysR family transcriptional regulator compare
MMP_RS03145 -1.3 -5.6 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS01600 -1.3 -2.1 50S ribosomal protein L15e compare
MMP_RS01920 -1.3 -10.7 glycosyltransferase family 2 protein compare
MMP_RS08660 -1.3 -7.9 DHH family phosphoesterase compare
MMP_RS05280 -1.3 -8.3 COG1361 S-layer family protein compare
MMP_RS05285 -1.3 -6.3 MMPL family transporter compare
MMP_RS03110 -1.3 -5.7 glycosyltransferase family 2 protein compare
MMP_RS04620 -1.3 -8.0 cobalt transporter CbiM compare
MMP_RS07730 -1.3 -2.8 pyruvate synthase subunit beta compare
MMP_RS03700 -1.2 -6.5 sodium:proton antiporter compare
MMP_RS01970 -1.2 -10.4 TIGR04279 domain-containing protein compare
MMP_RS04720 -1.2 -3.5 DedA family protein compare
MMP_RS08320 -1.2 -6.8 molybdopterin molybdotransferase MoeA compare
MMP_RS08600 -1.2 -2.7 flagellar protein D compare
MMP_RS07820 -1.2 -4.8 UPF0104 family protein compare
MMP_RS08915 -1.2 -2.3 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS03095 -1.2 -7.8 diphthine synthase compare
MMP_RS07710 -1.2 -6.9 cell division protein FtsZ compare
MMP_RS06575 -1.1 -3.4 fluoride efflux transporter CrcB compare
MMP_RS01725 -1.1 -5.7 class I SAM-dependent methyltransferase family protein compare
MMP_RS08590 -1.1 -4.3 flagellin compare
MMP_RS01840 -1.1 -7.8 TIGR00289 family protein compare
MMP_RS06340 -1.1 -6.7 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01180 -1.1 -1.0 XTP/dITP diphosphatase compare
MMP_RS04875 -1.1 -5.0 energy-converting hydrogenase B subunit P compare
MMP_RS05765 -1.1 -7.2 M42 family metallopeptidase compare
MMP_RS07580 -1.1 -2.9 DUF356 domain-containing protein compare
MMP_RS01720 -1.1 -1.5 replication factor C large subunit compare
MMP_RS01665 -1.1 -3.6 DUF2111 domain-containing protein compare
MMP_RS06310 -1.1 -3.4 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS07330 -1.1 -8.8 membrane protein compare
MMP_RS00915 -1.1 -5.1 DUF116 domain-containing protein compare
MMP_RS01945 -1.1 -6.6 DUF4350 domain-containing protein compare
MMP_RS07090 -1.1 -7.7 tRNA (adenine-N1)-methyltransferase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community 1,3-Propanediol across organisms