Experiment set1IT063 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 5 generations

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS00730 +1.2 6.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS00725 +1.1 5.8 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS00735 +1.1 5.7 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS06395 +1.0 4.8 ThiF family adenylyltransferase compare
MMP_RS06725 +1.0 7.2 hypothetical protein compare
MMP_RS07345 +1.0 6.5 glycine synthesis protein GlyXL (from data) compare
MMP_RS06325 +0.9 4.8 hypothetical protein compare
MMP_RS07695 +0.8 4.7 DUF3236 domain-containing protein compare
MMP_RS03340 +0.7 1.1 ABC transporter ATP-binding protein compare
MMP_RS06840 +0.7 1.1 DNA-directed RNA polymerase subunit N compare
MMP_RS00315 +0.7 5.0 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS03450 +0.7 2.2 glycine synthesis protein GlyXS (from data) compare
MMP_RS06975 +0.7 2.8 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS07700 +0.6 4.3 DUF1188 domain-containing protein compare
MMP_RS01570 +0.6 2.1 hypothetical protein compare
MMP_RS02045 +0.6 1.9 tRNA-Met compare
MMP_RS08310 +0.6 2.3 TMEM165/GDT1 family protein compare
MMP_RS06015 +0.6 3.6 flavodoxin family protein compare
MMP_RS00450 +0.6 1.2 4Fe-4S binding protein compare
MMP_RS08615 +0.6 2.4 flagellar protein G compare
MMP_RS07765 +0.6 3.7 sodium:alanine symporter family protein compare
MMP_RS08275 +0.6 4.1 hypothetical protein compare
MMP_RS04850 +0.5 4.2 UPF0254 family protein compare
MMP_RS08940 +0.5 1.3 MetS family NSS transporter small subunit compare
MMP_RS01650 +0.5 1.0 sulfurtransferase TusA family protein compare
MMP_RS01785 +0.5 2.7 hypothetical protein compare
MMP_RS01620 +0.5 2.4 hypothetical protein compare
MMP_RS02475 +0.5 1.2 hypothetical protein compare
MMP_RS00655 +0.5 2.4 hypothetical protein compare
MMP_RS07645 +0.5 3.0 aldehyde dehydrogenase family protein compare
MMP_RS03465 +0.5 1.2 adenine phosphoribosyltransferase compare
MMP_RS02675 +0.5 2.1 hypothetical protein compare
MMP_RS05835 +0.4 0.8 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS08850 +0.4 4.1 hypothetical protein compare
MMP_RS08845 +0.4 3.6 archaellum operon transcriptional activator EarA family protein compare
MMP_RS01675 +0.4 1.4 hypothetical protein compare
MMP_RS00430 +0.4 1.1 hypothetical protein compare
MMP_RS05720 +0.4 1.3 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS07650 +0.4 3.1 TldD/PmbA family protein compare
MMP_RS06930 +0.4 3.0 MBL fold metallo-hydrolase compare
MMP_RS06540 +0.4 1.5 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS06530 +0.4 2.1 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS08395 +0.4 2.0 DsrE family protein compare
MMP_RS06910 +0.4 2.5 RlmF-related methyltransferase compare
MMP_RS08105 +0.4 2.3 6-carboxyhexanoate--CoA ligase compare
MMP_RS08700 +0.4 2.6 hypothetical protein compare
MMP_RS01055 +0.4 1.7 hypothetical protein compare
MMP_RS00395 +0.4 1.1 MGMT family protein compare
MMP_RS00185 +0.4 3.3 potassium channel protein compare
MMP_RS05715 +0.4 2.9 hypothetical protein compare
MMP_RS00290 +0.4 2.7 hypothetical protein compare
MMP_RS08855 +0.4 2.4 hypothetical protein compare
MMP_RS06710 +0.4 2.3 selenium-binding protein compare
MMP_RS01980 +0.4 3.2 trimeric intracellular cation channel family protein compare
MMP_RS08235 +0.4 2.0 hypothetical protein compare
MMP_RS08675 +0.4 1.2 class III signal peptide-containing protein compare
MMP_RS00705 +0.3 0.8 hypothetical protein compare
MMP_RS08835 +0.3 2.4 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS08750 +0.3 2.0 hypothetical protein compare
MMP_RS01865 +0.3 1.0 GPR1/FUN34/YaaH family transporter compare
MMP_RS01075 +0.3 0.6 hypothetical protein compare
MMP_RS01630 +0.3 2.6 N-glycosylase/DNA lyase compare
MMP_RS00245 +0.3 2.9 type II secretion system F family protein compare
MMP_RS08390 +0.3 1.6 DUF5400 domain-containing protein compare
MMP_RS01120 +0.3 1.8 permease compare
MMP_RS09050 +0.3 1.2 CAP domain-containing protein compare
MMP_RS00640 +0.3 2.3 ABC transporter substrate-binding protein compare
MMP_RS07890 +0.3 1.3 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS07915 +0.3 1.5 DUF4870 domain-containing protein compare
MMP_RS08930 +0.3 1.0 hypothetical protein compare
MMP_RS00240 +0.3 2.5 type II secretion system F family protein compare
MMP_RS07840 +0.3 1.5 ribonuclease III compare
MMP_RS05695 +0.3 2.1 phospholipase D-like domain-containing protein compare
MMP_RS07775 +0.3 1.8 alanine dehydrogenase compare
MMP_RS01430 +0.3 2.2 mechanosensitive ion channel family protein compare
MMP_RS00545 +0.3 1.7 XRE family transcriptional regulator compare
MMP_RS08980 +0.3 1.6 hypothetical protein compare
MMP_RS08080 +0.3 1.8 YchF/TatD family DNA exonuclease compare
MMP_RS08665 +0.3 2.6 hypothetical protein compare
MMP_RS08480 +0.3 2.0 molybdate ABC transporter substrate-binding protein compare
MMP_RS07120 +0.3 2.1 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS01290 +0.3 2.2 class III signal peptide-containing protein compare
MMP_RS07850 +0.3 1.0 prephenate dehydratase compare
MMP_RS08315 +0.3 1.2 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS08325 +0.3 2.1 hypothetical protein compare
MMP_RS00035 +0.3 2.3 DUF2098 family protein compare
MMP_RS07895 +0.3 1.0 cytochrome c compare
MMP_RS06335 +0.3 1.1 HAD family hydrolase compare
MMP_RS08285 +0.3 2.0 serine/threonine protein kinase compare
MMP_RS00535 +0.3 0.8 TIGR00375 family protein compare
MMP_RS08415 +0.3 1.5 radical SAM protein compare
MMP_RS00660 +0.3 2.0 alkaline phosphatase family protein compare
MMP_RS08100 +0.3 1.6 8-amino-7-oxononanoate synthase compare
MMP_RS03895 +0.3 1.2 hypothetical protein compare
MMP_RS08130 +0.3 2.1 IGHMBP2 family helicase compare
MMP_RS00990 +0.3 0.7 hypothetical protein compare
MMP_RS02960 +0.3 1.9 class I SAM-dependent methyltransferase family protein compare
MMP_RS02540 +0.3 1.6 DUF2283 domain-containing protein compare
MMP_RS00690 +0.2 1.8 MBL fold metallo-hydrolase compare
MMP_RS08775 +0.2 1.0 methanogenesis marker 9 domain-containing protein compare
MMP_RS08610 +0.2 2.0 flagellar protein F compare
MMP_RS03910 +0.2 0.8 hypothetical protein compare
MMP_RS07925 +0.2 1.5 haloacid dehalogenase compare
MMP_RS06760 +0.2 1.4 hypothetical protein compare
MMP_RS03625 +0.2 1.7 cell wall-binding protein compare
MMP_RS05090 +0.2 1.1 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05985 +0.2 0.6 hypothetical protein compare
MMP_RS08770 +0.2 1.5 hypothetical protein compare
MMP_RS07715 +0.2 2.0 YfcE family phosphodiesterase compare
MMP_RS03535 +0.2 0.7 helix-turn-helix transcriptional regulator compare
MMP_RS07125 +0.2 1.2 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS07130 +0.2 2.0 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS08670 +0.2 1.7 metallophosphoesterase compare
MMP_RS07560 +0.2 1.5 prefoldin subunit alpha compare
MMP_RS09065 +0.2 1.8 hypothetical protein compare
MMP_RS07100 +0.2 1.6 hypothetical protein compare
MMP_RS08230 +0.2 1.5 50S ribosomal protein L11 methyltransferase compare
MMP_RS03220 +0.2 1.1 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS06430 +0.2 1.6 6-carboxytetrahydropterin synthase QueD compare
MMP_RS06590 +0.2 1.1 GNAT family N-acetyltransferase compare
MMP_RS07835 +0.2 1.0 TldD/PmbA family protein compare
MMP_RS00155 +0.2 1.2 heavy metal-binding domain-containing protein compare
MMP_RS08630 +0.2 1.1 archaellar assembly protein FlaJ compare
MMP_RS08640 +0.2 1.8 TIM barrel protein compare
MMP_RS01635 +0.2 1.5 thiamine pyrophosphate-dependent enzyme compare
MMP_RS00855 +0.2 1.4 DUF367 family protein compare
MMP_RS07550 +0.2 1.6 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS01280 +0.2 1.8 DUF515 domain-containing protein compare
MMP_RS04030 +0.2 1.5 hypothetical protein compare
MMP_RS00960 +0.2 1.5 iron export ABC transporter permease subunit FetB compare
MMP_RS00085 +0.2 1.4 DNA cytosine methyltransferase compare
MMP_RS04610 +0.2 1.0 Dabb family protein compare
MMP_RS08250 +0.2 1.6 pyruvate kinase compare
MMP_RS03890 +0.2 1.2 DUF2540 domain-containing protein compare
MMP_RS00280 +0.2 1.6 DUF2118 domain-containing protein compare
MMP_RS02495 +0.2 0.9 hypothetical protein compare
MMP_RS00295 +0.2 1.0 gamma carbonic anhydrase family protein compare
MMP_RS02020 +0.2 1.0 gamma-glutamylcyclotransferase compare
MMP_RS07855 +0.2 1.6 class I SAM-dependent methyltransferase compare
MMP_RS02410 +0.2 1.1 ABC transporter substrate-binding protein compare
MMP_RS00250 +0.2 1.7 Flp pilus assembly complex ATPase component TadA compare
MMP_RS08490 +0.2 1.7 hypothetical protein compare
MMP_RS00435 +0.2 1.7 CPBP family intramembrane metalloprotease compare
MMP_RS00665 +0.2 1.0 hypothetical protein compare
MMP_RS02260 +0.2 1.7 lactate utilization protein compare
MMP_RS03870 +0.2 1.0 purine NTPase compare
MMP_RS02595 +0.2 0.5 putative zinc-binding protein compare
MMP_RS08205 +0.2 1.6 stage II sporulation protein M compare
MMP_RS08380 +0.2 1.1 phosphatase PAP2 family protein compare
MMP_RS05675 +0.2 0.9 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS02680 +0.2 1.2 ABC transporter permease compare
MMP_RS06375 +0.2 1.0 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS03420 +0.2 0.8 acetolactate synthase small subunit compare
MMP_RS01150 +0.2 1.4 aldo/keto reductase compare
MMP_RS02550 +0.2 1.2 helix-turn-helix transcriptional regulator compare
MMP_RS00955 +0.2 1.6 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS06520 +0.2 0.7 DUF1786 domain-containing protein compare
MMP_RS08830 +0.2 1.1 GTP-binding protein compare
MMP_RS07590 +0.2 1.6 hypothetical protein compare
MMP_RS03065 +0.2 0.5 AzlC family ABC transporter permease compare
MMP_RS03740 +0.2 0.7 indolepyruvate oxidoreductase subunit beta compare
MMP_RS01310 +0.2 1.7 hypothetical protein compare
MMP_RS08290 +0.2 1.4 DNA-binding protein Alba compare
MMP_RS02690 +0.2 1.1 FmdE family protein compare
MMP_RS03215 +0.2 1.2 MBL fold metallo-hydrolase compare
MMP_RS01770 +0.2 1.5 ATP-dependent endonuclease compare
MMP_RS05780 +0.2 1.3 multidrug resistance efflux transporter family protein compare
MMP_RS07150 +0.2 1.2 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS08500 +0.2 1.3 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS02740 +0.2 1.1 hypothetical protein compare
MMP_RS07095 +0.2 1.0 PspC domain-containing protein compare
MMP_RS09060 +0.2 1.4 hypothetical protein compare
MMP_RS00825 +0.2 0.7 fumarylacetoacetate hydrolase family protein compare
MMP_RS00040 +0.2 0.9 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS09030 +0.2 0.9 hypothetical protein compare
MMP_RS00630 +0.2 1.1 ECF transporter S component compare
MMP_RS05660 +0.2 1.1 phosphate ABC transporter substrate-binding protein compare
MMP_RS05975 +0.2 0.5 hypothetical protein compare
MMP_RS01655 +0.2 1.0 DsrE family protein compare
MMP_RS00540 +0.2 1.2 PLP-dependent aminotransferase family protein compare
MMP_RS07910 +0.2 1.1 NAD(P)H-hydrate dehydratase compare
MMP_RS07985 +0.2 1.3 nitroreductase family protein compare
MMP_RS07155 +0.2 1.3 MFS transporter compare
MMP_RS02490 +0.2 0.9 hypothetical protein compare
MMP_RS08385 +0.2 1.1 ABC transporter substrate-binding protein compare
MMP_RS04020 +0.2 1.1 hypothetical protein compare
MMP_RS00100 +0.2 1.3 tRNA pseudouridine(13) synthase TruD compare
MMP_RS07900 +0.2 0.6 YeeE/YedE family protein compare
MMP_RS08470 +0.2 1.0 ATP-binding cassette domain-containing protein compare
MMP_RS08410 +0.2 0.9 DUF169 domain-containing protein compare
MMP_RS05965 +0.2 1.0 carboxymuconolactone decarboxylase family protein compare
MMP_RS00650 +0.2 1.3 ABC transporter ATP-binding protein compare
MMP_RS01060 +0.2 1.4 calcium/sodium antiporter compare
MMP_RS07595 +0.2 1.4 hypothetical protein compare
MMP_RS01435 +0.2 0.6 DMT family transporter compare
MMP_RS03150 +0.2 1.4 phosphoglycerate mutase compare
MMP_RS06050 +0.2 1.2 ZIP family metal transporter compare
MMP_RS03320 +0.2 0.4 metal-dependent transcriptional regulator compare
MMP_RS04735 +0.2 0.9 tautomerase family protein compare
MMP_RS06140 +0.2 0.8 radical SAM protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community 1,3-Propanediol across organisms