Experiment set1IT063 for Pantoea sp. MT58

Compare to:

copper (II) chloride dihydrate 5 uM, aerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI47_02380 +1.8 3.0 DNA-binding transcriptional regulator Fis compare
IAI47_06395 +1.7 2.3 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_11830 +1.5 11.7 muramoyltetrapeptide carboxypeptidase compare
IAI47_06455 +1.3 6.2 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_01780 +1.0 2.5 Fe-S biogenesis protein NfuA compare
IAI47_04705 +1.0 2.2 hypothetical protein compare
IAI47_05325 +1.0 1.3 DUF1471 domain-containing protein compare
IAI47_17205 +1.0 1.8 PTS phosphocarrier protein NPr compare
IAI47_21720 +1.0 3.9 efflux RND transporter periplasmic adaptor subunit compare
IAI47_09550 +1.0 5.0 hypothetical protein compare
IAI47_21665 +0.9 1.1 DUF333 domain-containing protein compare
IAI47_09305 +0.8 2.0 cyclic di-GMP phosphodiesterase compare
IAI47_06390 +0.8 2.0 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_21235 +0.8 2.2 hypothetical protein compare
IAI47_05435 +0.7 3.1 hypothetical protein compare
IAI47_11535 +0.7 2.0 DcrB-related protein compare
IAI47_11215 +0.7 5.9 type VI secretion system-associated FHA domain protein TagH compare
IAI47_06450 +0.7 3.1 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_17895 +0.7 4.1 diacylglycerol kinase compare
IAI47_06480 +0.7 4.9 phosphotransferase RcsD compare
IAI47_06380 +0.7 1.1 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_04775 +0.7 1.4 SIR2 family protein compare
IAI47_17970 +0.7 2.1 hypothetical protein compare
IAI47_21790 +0.7 2.7 helix-turn-helix domain-containing protein compare
IAI47_03195 +0.6 2.3 cell division protein FtsP compare
IAI47_11415 +0.6 0.8 hypothetical protein compare
IAI47_21880 +0.6 0.7 ParA family protein compare
IAI47_06385 +0.6 2.2 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_16430 +0.6 1.7 histidine phosphatase family protein compare
IAI47_01005 +0.6 4.9 DUF413 domain-containing protein compare
IAI47_21470 +0.6 2.9 DUF2778 domain-containing protein compare
IAI47_03135 +0.6 3.3 outer membrane channel protein TolC compare
IAI47_08430 +0.6 1.3 dihydroneopterin triphosphate diphosphatase compare
IAI47_12800 +0.6 2.6 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
IAI47_19550 +0.6 1.6 DUF1471 domain-containing protein compare
IAI47_02400 +0.6 0.7 YhdT family protein compare
IAI47_20035 +0.6 2.3 GNAT family N-acetyltransferase compare
IAI47_21505 +0.6 2.2 DUF2256 domain-containing protein compare
IAI47_11210 +0.5 4.0 type VI secretion system-associated protein TagF compare
IAI47_19465 +0.5 2.9 VOC family protein compare
IAI47_15605 +0.5 0.8 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_17825 +0.5 2.4 MmcQ/YjbR family DNA-binding protein compare
IAI47_07550 +0.5 0.7 tRNA-Asn compare
IAI47_12435 +0.5 1.7 hypothetical protein compare
IAI47_12780 +0.5 4.5 L,D-transpeptidase compare
IAI47_19900 +0.5 2.4 amino acid ABC transporter ATP-binding protein compare
IAI47_09245 +0.5 1.7 YmiA family putative membrane protein compare
IAI47_14695 +0.5 1.7 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_14540 +0.5 3.2 ABC transporter ATP-binding protein compare
IAI47_02495 +0.5 1.9 hypothetical protein compare
IAI47_10430 +0.5 1.9 hypothetical protein compare
IAI47_19355 +0.5 1.8 response regulator compare
IAI47_11635 +0.5 2.2 hypothetical protein compare
IAI47_15980 +0.5 3.3 catabolite repressor/activator compare
IAI47_07930 +0.5 1.3 DUF2158 domain-containing protein compare
IAI47_21830 +0.5 1.2 hypothetical protein compare
IAI47_00930 +0.5 3.4 DNA-binding transcriptional regulator OxyR compare
IAI47_15705 +0.5 3.0 YacC family pilotin-like protein compare
IAI47_07280 +0.5 1.8 RluA family pseudouridine synthase compare
IAI47_10790 +0.5 1.6 YnhF family membrane protein compare
IAI47_05845 +0.5 2.4 hypothetical protein compare
IAI47_06470 +0.5 4.0 two-component system sensor histidine kinase RcsC compare
IAI47_11115 +0.5 1.3 hypothetical protein compare
IAI47_20630 +0.5 2.3 DUF2534 family protein compare
IAI47_04450 +0.5 0.7 tRNA-Ala compare
IAI47_12355 +0.5 1.8 hydroxymyristoyl-ACP dehydratase compare
IAI47_07965 +0.5 2.0 transcriptional regulator RcsA compare
IAI47_06420 +0.5 1.9 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_07390 +0.5 2.0 creatininase family protein compare
IAI47_17200 +0.5 3.6 RNase adapter RapZ compare
IAI47_02050 +0.5 3.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_14190 +0.5 1.1 DUF2171 domain-containing protein compare
IAI47_07790 +0.5 1.1 ribose 1,5-bisphosphokinase compare
IAI47_12620 +0.4 3.7 DNA helicase IV compare
IAI47_12545 +0.4 1.6 general stress protein compare
IAI47_20505 +0.4 2.2 type II toxin-antitoxin system PrlF family antitoxin compare
IAI47_19940 +0.4 1.3 hypothetical protein compare
IAI47_17080 +0.4 2.6 transcription elongation factor GreA compare
IAI47_10170 +0.4 1.4 hypothetical protein compare
IAI47_08960 +0.4 2.4 bifunctional nicotinamidase/pyrazinamidase compare
IAI47_04740 +0.4 1.6 hypothetical protein compare
IAI47_09260 +0.4 2.1 phosphatidylglycerophosphatase B compare
IAI47_02395 +0.4 3.7 sodium/pantothenate symporter compare
IAI47_19675 +0.4 1.2 ParD-like family protein compare
IAI47_13485 +0.4 2.2 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_16135 +0.4 1.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_12145 +0.4 2.2 flagellar basal body rod protein FlgF compare
IAI47_12470 +0.4 3.7 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_17135 +0.4 2.6 outer membrane lipid asymmetry maintenance protein MlaD compare
IAI47_00370 +0.4 3.4 ribokinase compare
IAI47_21145 +0.4 2.1 hypothetical protein compare
IAI47_00850 +0.4 2.2 ATP-dependent protease subunit HslV compare
IAI47_11550 +0.4 1.6 hypothetical protein compare
IAI47_07380 +0.4 2.4 ABC transporter ATP-binding protein compare
IAI47_10500 +0.4 3.0 dipeptide/tripeptide permease DtpA compare
IAI47_02385 +0.4 3.1 tRNA dihydrouridine synthase DusB compare
IAI47_07285 +0.4 2.1 hypothetical protein compare
IAI47_06410 +0.4 1.5 NADH-quinone oxidoreductase subunit L compare
IAI47_08200 +0.4 1.4 hypothetical protein compare
IAI47_18415 +0.4 1.2 lipoprotein compare
IAI47_01000 +0.4 3.5 HTH-type transcriptional regulator HdfR compare
IAI47_15150 +0.4 2.6 DUF3289 family protein compare
IAI47_21520 +0.4 2.1 YgdI/YgdR family lipoprotein compare
IAI47_01135 +0.4 0.4 hypothetical protein compare
IAI47_11490 +0.4 1.4 PAAR domain-containing protein compare
IAI47_14075 +0.4 1.3 transcription antiterminator/RNA stability regulator CspE compare
IAI47_04105 +0.4 2.6 glycerate kinase compare
IAI47_04110 +0.4 3.6 two-component sensor histidine kinase BarA compare
IAI47_10265 +0.4 1.7 helix-turn-helix domain-containing protein compare
IAI47_10575 +0.4 1.2 hypothetical protein compare
IAI47_12995 +0.4 2.3 arginine ABC transporter ATP-binding protein ArtP compare
IAI47_05015 +0.4 2.2 enhanced serine sensitivity protein SseB compare
IAI47_01625 +0.4 1.6 GNAT family N-acetyltransferase compare
IAI47_13825 +0.4 1.4 YbfA family protein compare
IAI47_20265 +0.4 1.5 DUF1641 domain-containing protein compare
IAI47_12555 +0.4 1.3 hypothetical protein compare
IAI47_10590 +0.4 1.5 translesion error-prone DNA polymerase V autoproteolytic subunit compare
IAI47_07755 +0.4 1.5 phosphonate C-P lyase system protein PhnG compare
IAI47_19195 +0.4 2.3 acetyltransferase compare
IAI47_04030 +0.4 1.9 DUF423 domain-containing protein compare
IAI47_16955 +0.4 2.5 N-acetyltransferase compare
IAI47_12330 +0.4 2.0 DUF3261 domain-containing protein compare
IAI47_11700 +0.4 1.8 SH3 domain-containing protein compare
IAI47_06675 +0.4 0.8 DUF1232 domain-containing protein compare
IAI47_15975 +0.4 1.5 division/cell wall cluster transcriptional repressor MraZ compare
IAI47_08540 +0.4 1.7 YebY family protein compare
IAI47_09900 +0.4 0.9 type II toxin-antitoxin system antitoxin HipB compare
IAI47_08815 +0.4 1.8 hypothetical protein compare
IAI47_10255 +0.4 1.3 isochorismatase family protein compare
IAI47_19780 +0.4 1.8 TetR/AcrR family transcriptional regulator compare
IAI47_03480 +0.3 1.2 DUF2474 domain-containing protein compare
IAI47_11630 +0.3 0.8 hypothetical protein compare
IAI47_06530 +0.3 2.1 DNA oxidative demethylase AlkB compare
IAI47_11515 +0.3 0.5 hypothetical protein compare
IAI47_19640 +0.3 2.0 helix-turn-helix transcriptional regulator compare
IAI47_17675 +0.3 1.8 DUF1471 domain-containing protein compare
IAI47_02655 +0.3 1.8 hypothetical protein compare
IAI47_08740 +0.3 2.1 DUF2627 domain-containing protein compare
IAI47_07300 +0.3 1.3 hypothetical protein compare
IAI47_06570 +0.3 2.4 nucleoid-associated protein YejK compare
IAI47_01500 +0.3 1.3 DcrB family lipoprotein compare
IAI47_00805 +0.3 2.2 DUF805 domain-containing protein compare
IAI47_14700 +0.3 1.9 protoheme IX farnesyltransferase compare
IAI47_16685 +0.3 1.5 DUF2501 domain-containing protein compare
IAI47_16420 +0.3 2.7 LacI family DNA-binding transcriptional regulator compare
IAI47_08460 +0.3 2.0 zinc ABC transporter ATP-binding protein ZnuC compare
IAI47_21700 +0.3 1.4 family 1 glycosylhydrolase compare
IAI47_11065 +0.3 1.5 excinuclease Cho compare
IAI47_05660 +0.3 1.8 serine protease compare
IAI47_00375 +0.3 3.0 ribose operon transcriptional repressor RbsR compare
IAI47_20775 +0.3 1.8 hydroxyacid dehydrogenase compare
IAI47_05160 +0.3 2.3 ABC transporter permease subunit compare
IAI47_17710 +0.3 2.5 glutamate/aspartate:proton symporter GltP compare
IAI47_09300 +0.3 1.8 crotonase/enoyl-CoA hydratase family protein compare
IAI47_04545 +0.3 1.3 glutaredoxin-like protein NrdH compare
IAI47_18930 +0.3 1.2 carboxymuconolactone decarboxylase family protein compare
IAI47_09455 +0.3 1.3 murein tripeptide amidase MpaA compare
IAI47_21360 +0.3 1.5 transcriptional regulator compare
IAI47_14910 +0.3 1.6 recombination-associated protein RdgC compare
IAI47_00840 +0.3 1.2 ribonuclease E activity regulator RraA compare
IAI47_10120 +0.3 1.6 ATP-binding protein compare
IAI47_01655 +0.3 1.6 gluconokinase compare
IAI47_17605 +0.3 2.3 response regulator compare
IAI47_09540 +0.3 2.3 two-component system sensor histidine kinase RstB compare
IAI47_15690 +0.3 1.8 hypoxanthine phosphoribosyltransferase compare
IAI47_15095 +0.3 1.2 hypothetical protein compare
IAI47_05510 +0.3 2.3 putative DNA-binding transcriptional regulator compare
IAI47_05080 +0.3 1.1 zinc ribbon domain-containing protein compare
IAI47_18075 +0.3 2.1 NAD(+) diphosphatase compare
IAI47_07055 +0.3 1.4 YbaK/prolyl-tRNA synthetase associated domain-containing protein compare
IAI47_21715 +0.3 1.7 HAMP domain-containing protein compare
IAI47_11505 +0.3 1.7 hypothetical protein compare
IAI47_09750 +0.3 2.0 ROK family transcriptional regulator compare
IAI47_01170 +0.3 1.7 fluoride efflux transporter CrcB compare
IAI47_04690 +0.3 1.7 hypothetical protein compare
IAI47_15185 +0.3 1.7 class II glutamine amidotransferase compare
IAI47_17830 +0.3 2.0 YjbQ family protein compare
IAI47_13070 +0.3 1.8 GrxA family glutaredoxin compare
IAI47_20245 +0.3 1.8 DUF1109 domain-containing protein compare
IAI47_13625 +0.3 1.9 CDF family zinc transporter ZitB compare
IAI47_04280 +0.3 1.5 alkylphosphonate utilization protein compare
IAI47_09845 +0.3 1.3 hypothetical protein compare
IAI47_08550 +0.3 1.7 hypothetical protein compare
IAI47_10185 +0.3 1.1 PTS sugar transporter subunit IIB compare
IAI47_09490 +0.3 1.6 DUF333 domain-containing protein compare
IAI47_10835 +0.3 0.4 tRNA-Val compare
IAI47_06265 +0.3 2.1 cell division protein DedD compare
IAI47_08605 +0.3 1.0 hypothetical protein compare
IAI47_14080 +0.3 1.3 hypothetical protein compare
IAI47_14940 +0.3 0.7 YaiI/YqxD family protein compare
IAI47_16610 +0.3 1.3 hypothetical protein compare
IAI47_10365 +0.3 2.0 adenosine deaminase compare
IAI47_13220 +0.3 1.8 flavin reductase family protein compare
IAI47_12955 +0.3 1.2 cold shock-like protein CspD compare
IAI47_20510 +0.3 1.7 maltose operon protein MalM compare
IAI47_18550 +0.3 1.0 peptidylprolyl isomerase compare
IAI47_06780 +0.3 1.7 iron-sulfur cluster carrier protein ApbC compare
IAI47_03290 +0.3 1.9 hypothetical protein compare
IAI47_12570 +0.3 0.5 tRNA-Ser compare
IAI47_08035 +0.3 0.6 flagellar hook-basal body complex protein FliE compare


Specific Phenotypes

For 9 genes in this experiment

For stress copper (II) chloride dihydrate in Pantoea sp. MT58

For stress copper (II) chloride dihydrate across organisms