Experiment set1IT063 for Phocaeicola vulgatus CL09T03C04
L-Rhamnose monohydrate 20 mM carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + L-Rhamnose monohydrate (20 mM)
Culturing: Bvulgatus_CL09T03C04_ML5, 96 deep-well microplate; 0.5 mL volume, Anaerobic, at 34 (C), shaken=0 rpm
By: Surya Tripathi on 12/22/21
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 3 genes in this experiment
For carbon source L-Rhamnose monohydrate in Phocaeicola vulgatus CL09T03C04
For carbon source L-Rhamnose monohydrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| L-rhamnose utilization | 2 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-lyxose degradation | 4 | 2 | 1 |
| L-rhamnose degradation I | 5 | 5 | 1 |
| superpathway of fucose and rhamnose degradation | 12 | 9 | 1 |
| superpathway of pentose and pentitol degradation | 42 | 11 | 1 |