Experiment set1IT062 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium D-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_13070 -5.4 -3.7 phosphoserine phosphatase compare
AO353_05705 -5.1 -8.5 oxidoreductase conserved
AO353_02070 -5.0 -4.9 prephenate dehydratase compare
AO353_07220 -4.8 -8.1 anthranilate synthase compare
AO353_05115 -4.8 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_00430 -4.7 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_05715 -4.6 -12.0 lactate utilization protein B/C conserved
AO353_10670 -4.6 -8.9 shikimate dehydrogenase compare
AO353_07230 -4.6 -18.1 anthranilate synthase compare
AO353_20625 -4.5 -4.4 3-isopropylmalate dehydratase compare
AO353_08185 -4.5 -11.5 methionine biosynthesis protein MetW compare
AO353_14400 -4.5 -3.1 Fis family transcriptional regulator compare
AO353_00310 -4.5 -10.3 transaldolase compare
AO353_13165 -4.4 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
AO353_02075 -4.4 -11.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20635 -4.3 -15.5 3-isopropylmalate dehydrogenase compare
AO353_05700 -4.3 -13.3 L-lactate permease conserved
AO353_12365 -4.3 -5.1 phosphoribosyl-AMP cyclohydrolase compare
AO353_08180 -4.2 -14.9 homoserine O-acetyltransferase compare
AO353_12075 -4.2 -9.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_14505 -4.2 -15.0 ketol-acid reductoisomerase compare
AO353_12515 -4.2 -24.4 glutamate synthase compare
AO353_09240 -4.1 -4.0 acetylglutamate kinase compare
AO353_05720 -4.1 -15.2 4Fe-4S ferredoxin conserved
AO353_20620 -4.1 -9.4 isopropylmalate isomerase compare
AO353_12070 -4.0 -11.6 imidazoleglycerol-phosphate dehydratase compare
AO353_14500 -4.0 -7.7 acetolactate synthase 3 regulatory subunit compare
AO353_12085 -4.0 -10.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20540 -4.0 -10.3 aromatic amino acid aminotransferase compare
AO353_20695 -3.9 -7.9 O-succinylhomoserine sulfhydrylase compare
AO353_12520 -3.9 -14.7 glutamate synthase compare
AO353_10030 -3.9 -13.0 pyruvate carboxylase subunit A compare
AO353_08685 -3.9 -10.7 N-acetylglutamate synthase compare
AO353_22800 -3.9 -5.3 sulfite reductase compare
AO353_20665 -3.9 -12.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_05710 -3.8 -16.8 (Fe-S)-binding protein conserved
AO353_08345 -3.8 -12.0 dihydroxy-acid dehydratase compare
AO353_19060 -3.8 -5.7 CysB family transcriptional regulator compare
AO353_05110 -3.7 -13.8 histidinol dehydrogenase compare
AO353_12500 -3.7 -2.6 shikimate kinase compare
AO353_10025 -3.7 -18.6 pyruvate carboxylase subunit B compare
AO353_07215 -3.7 -9.5 anthranilate phosphoribosyltransferase compare
AO353_07210 -3.7 -7.5 indole-3-glycerol-phosphate synthase compare
AO353_12360 -3.6 -11.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08475 -3.6 -11.8 phosphoserine phosphatase compare
AO353_10710 -3.6 -7.2 tryptophan synthase subunit beta compare
AO353_10035 -3.5 -9.6 LysR family transcriptional regulator compare
AO353_08510 -3.5 -6.7 3-phosphoglycerate dehydrogenase compare
AO353_06515 -3.5 -12.1 hypothetical protein conserved
AO353_14495 -3.4 -15.2 acetolactate synthase 3 catalytic subunit compare
AO353_02710 -3.4 -16.2 (p)ppGpp synthetase compare
AO353_11775 -3.4 -10.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_20175 -3.4 -5.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_14115 -3.4 -8.1 gamma-glutamyl kinase compare
AO353_09000 -3.4 -8.0 argininosuccinate lyase compare
AO353_02685 -3.3 -5.1 phosphoribosylglycinamide formyltransferase compare
AO353_12115 -3.3 -4.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_16940 -3.3 -8.8 deoxycytidine triphosphate deaminase compare
AO353_07155 -3.3 -10.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_07515 -3.3 -3.8 transporter compare
AO353_07525 -3.2 -18.0 biotin synthase compare
AO353_06520 -3.2 -8.8 murein hydrolase transporter LrgA conserved
AO353_12090 -3.2 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12345 -3.2 -3.7 twin-arginine protein translocation system subunit TatC compare
AO353_15925 -3.1 -11.7 2-isopropylmalate synthase compare
AO353_04105 -3.1 -12.1 argininosuccinate synthase compare
AO353_11850 -3.0 -7.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_14595 -3.0 -11.7 carbonate dehydratase compare
AO353_04155 -2.9 -13.2 ornithine carbamoyltransferase compare
AO353_09040 -2.8 -2.4 diaminopimelate epimerase compare
AO353_00750 -2.8 -6.4 GntR family transcriptional regulator compare
AO353_08015 -2.8 -9.6 5,10-methylenetetrahydrofolate reductase compare
AO353_07505 -2.7 -10.1 dethiobiotin synthetase compare
AO353_03020 -2.6 -9.4 arginine N-succinyltransferase compare
AO353_14370 -2.6 -6.9 glucose-6-phosphate isomerase compare
AO353_00620 -2.5 -4.1 cytochrome C oxidase Cbb3 compare
AO353_08045 -2.5 -15.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_07520 -2.5 -13.5 8-amino-7-oxononanoate synthase compare
AO353_00825 -2.4 -5.7 porin compare
AO353_06495 -2.4 -5.5 gamma-glutamyl phosphate reductase compare
AO353_08885 -2.4 -16.1 polyphosphate kinase compare
AO353_08780 -2.4 -8.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_08165 -2.4 -4.2 pyrroline-5-carboxylate reductase compare
AO353_03580 -2.4 -5.2 ATP-dependent DNA helicase RuvB compare
AO353_07510 -2.4 -11.6 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_02250 -2.3 -4.0 chorismate synthase compare
AO353_15250 -2.2 -4.5 cytochrome B compare
AO353_06045 -2.2 -9.5 exodeoxyribonuclease V subunit beta compare
AO353_03590 -2.1 -5.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_03615 -2.1 -5.0 cold-shock protein compare
AO353_03015 -2.0 -4.8 arginine N-succinyltransferase compare
AO353_04355 -2.0 -3.5 homoserine dehydrogenase compare
AO353_05105 -2.0 -10.3 histidinol-phosphate aminotransferase compare
AO353_03585 -2.0 -3.1 ATP-dependent DNA helicase RuvA compare
AO353_02140 -2.0 -11.1 BolA family transcriptional regulator conserved
AO353_27650 -2.0 -5.8 cell division protein FtsK compare
AO353_02720 -2.0 -6.8 cysteine synthase compare
AO353_18715 -1.9 -2.4 histidine kinase compare
AO353_02810 -1.9 -9.2 histidine kinase compare
AO353_06040 -1.9 -4.3 exodeoxyribonuclease V subunit alpha compare
AO353_00650 -1.9 -3.5 cytochrome biogenesis protein compare
AO353_04175 -1.9 -6.2 glycerol uptake facilitator GlpF compare
AO353_00610 -1.9 -3.2 cytochrome C oxidase Cbb3 compare
AO353_06050 -1.9 -8.0 exodeoxyribonuclease V subunit gamma compare
AO353_13140 -1.8 -7.4 tRNA dimethylallyltransferase compare
AO353_10945 -1.8 -4.1 cytochrome C compare
AO353_10430 -1.8 -4.6 chromosome partitioning protein ParB compare
AO353_05340 -1.8 -4.4 histidine kinase compare
AO353_00605 -1.8 -7.4 cytochrome C oxidase Cbb3 compare
AO353_05625 -1.7 -2.1 transcription elongation factor GreA compare
AO353_10705 -1.7 -3.5 tryptophan synthase subunit alpha compare
AO353_16835 -1.7 -2.7 LuxR family transcriptional regulator compare
AO353_12105 -1.7 -6.5 peptidase S41 compare
AO353_08620 -1.6 -3.1 hypothetical protein compare
AO353_08880 -1.6 -3.2 exopolyphosphatase compare
AO353_04190 -1.6 -3.0 glycerol-3-phosphate dehydrogenase compare
AO353_06155 -1.6 -8.6 copper-transporting ATPase compare
AO353_14930 -1.5 -3.0 GntR family transcriptional regulator compare
AO353_03630 -1.5 -10.7 porin compare
AO353_07355 -1.5 -6.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_13640 -1.5 -5.1 histidine kinase compare
AO353_11770 -1.5 -2.4 molecular chaperone Hsp33 compare
AO353_18540 -1.5 -3.4 pseudouridine synthase compare
AO353_02975 -1.5 -3.4 aspartate kinase compare
AO353_02145 -1.4 -4.3 hypothetical protein compare
AO353_14775 -1.4 -6.6 hypothetical protein compare
AO353_12420 -1.4 -3.9 predicted FeS cluster maintenance protein (from data) compare
AO353_12240 -1.4 -4.9 histidine utilization repressor compare
AO353_01550 -1.4 -5.8 hypothetical protein compare
AO353_21625 -1.4 -2.7 Fe/S biogenesis protein NfuA compare
AO353_01410 -1.4 -3.1 ribonuclease E compare
AO353_13690 -1.4 -10.3 thiol:disulfide interchange protein compare
AO353_08485 -1.3 -9.6 threonine dehydratase compare
AO353_10900 -1.3 -8.3 hypothetical protein compare
AO353_02465 -1.3 -2.4 hypothetical protein compare
AO353_02320 -1.3 -6.9 allantoinase compare
AO353_14395 -1.3 -4.4 poly(A) polymerase compare
AO353_19360 -1.3 -3.2 peroxiredoxin compare
AO353_24130 -1.3 -2.0 hypothetical protein compare
AO353_08350 -1.3 -6.1 hypothetical protein compare
AO353_20370 -1.2 -3.5 MerR family transcriptional regulator compare
AO353_19295 -1.2 -2.0 hypothetical protein compare
AO353_06160 -1.2 -4.5 transcriptional regulator compare
AO353_02060 -1.2 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_15725 -1.2 -3.4 hypothetical protein compare
AO353_05080 -1.2 -7.5 sulfate adenylyltransferase compare
AO353_04565 -1.2 -5.3 nucleoid-associated protein compare
AO353_05075 -1.2 -7.7 adenylylsulfate kinase compare
AO353_00490 -1.2 -1.6 PasA protein compare
AO353_10905 -1.2 -6.7 zinc ABC transporter ATP-binding protein conserved
AO353_17750 -1.1 -3.2 transcriptional regulator compare
AO353_13200 -1.1 -7.0 exoribonuclease R compare
AO353_10985 -1.1 -2.4 hypothetical protein compare
AO353_03520 -1.1 -3.2 hypothetical protein compare
AO353_09285 -1.1 -6.4 reactive intermediate/imine deaminase compare
AO353_05420 -1.1 -1.7 peptide chain release factor 3 compare
AO353_16810 -1.1 -3.8 recombinase RecX compare
AO353_09050 -1.1 -3.7 recombinase XerC compare
AO353_00865 -1.1 -7.1 phosphoenolpyruvate synthase compare
AO353_14405 -1.1 -6.2 ATPase compare
AO353_10435 -1.1 -6.3 chromosome partitioning protein compare
AO353_10055 -1.1 -7.5 DNA helicase II compare
AO353_19030 -1.1 -5.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_20585 -1.0 -3.0 TetR family transcriptional regulator compare
AO353_10455 -1.0 -1.9 tRNA modification GTPase MnmE compare
AO353_14220 -1.0 -1.2 ribosomal large subunit pseudouridine synthase D compare
AO353_03250 -1.0 -1.9 gluconokinase compare
AO353_15170 -1.0 -2.4 cytochrome D ubiquinol oxidase subunit III compare
AO353_15490 -1.0 -2.2 hypothetical protein compare
AO353_16845 -1.0 -6.0 LysR family transcriptional regulator compare
AO353_15295 -1.0 -4.9 division/cell wall cluster transcriptional repressor MraZ compare
AO353_20800 -1.0 -1.3 hypothetical protein compare
AO353_10915 -1.0 -6.8 ABC transporter substrate-binding protein compare
AO353_03025 -1.0 -3.3 acetylornithine aminotransferase compare
AO353_07075 -1.0 -3.9 elongation factor Tu compare
AO353_11530 -0.9 -6.0 diguanylate cyclase compare
AO353_09015 -0.9 -2.7 DNA-binding protein compare
AO353_05690 -0.9 -2.2 SsrA-binding protein compare
AO353_22685 -0.9 -3.2 peroxidase compare
AO353_03605 -0.9 -1.2 FmdB family transcriptional regulator compare
AO353_19530 -0.9 -2.0 quinohemoprotein amine dehydrogenase compare
AO353_00875 -0.9 -5.3 transcriptional regulator compare
AO353_05240 -0.9 -2.0 rod shape-determining protein MreD compare
AO353_27180 -0.9 -3.0 peptidase M48, Ste24p compare
AO353_03235 -0.9 -5.5 glutamate-pyruvate aminotransferase compare
AO353_00630 -0.9 -4.1 (Fe-S)-binding protein compare
AO353_11165 -0.9 -5.5 hypothetical protein compare
AO353_16805 -0.9 -4.4 recombinase RecA compare
AO353_10445 -0.9 -1.2 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_13685 -0.9 -3.9 3-dehydroquinate dehydratase compare
AO353_04220 -0.9 -3.3 chemotaxis protein CheY compare
AO353_16605 -0.8 -6.3 protein-L-isoaspartate O-methyltransferase compare
AO353_25955 -0.8 -2.6 NIPSNAP family containing protein compare
AO353_18505 -0.8 -1.9 translation initiation factor 2 compare
AO353_19250 -0.8 -2.1 molybdenum cofactor guanylyltransferase compare
AO353_02280 -0.8 -1.7 DNA mismatch repair protein MutS compare
AO353_20840 -0.8 -1.9 ribose pyranase compare
AO353_04055 -0.8 -2.0 methionine--tRNA ligase compare
AO353_14740 -0.8 -2.8 GTP-binding protein compare
AO353_07250 -0.8 -2.0 polyamine ABC transporter permease compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Sodium D-Lactate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium D-Lactate across organisms