Experiment set1IT061 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Trisodium citrate dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_26685 -5.1 -6.1 cobalt efflux pump (from data) conserved
AO353_20625 -4.9 -3.4 3-isopropylmalate dehydratase compare
AO353_12070 -4.9 -6.7 imidazoleglycerol-phosphate dehydratase compare
AO353_20635 -4.8 -12.0 3-isopropylmalate dehydrogenase compare
AO353_20695 -4.8 -7.3 O-succinylhomoserine sulfhydrylase compare
AO353_00430 -4.7 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_20620 -4.7 -8.4 isopropylmalate isomerase compare
AO353_13070 -4.7 -8.4 phosphoserine phosphatase compare
AO353_05115 -4.6 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12520 -4.6 -11.5 glutamate synthase compare
AO353_12090 -4.5 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_07230 -4.3 -17.9 anthranilate synthase compare
AO353_02075 -4.3 -10.8 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_17590 -4.3 -8.6 transcriptional regulator conserved
AO353_20540 -4.2 -9.4 aromatic amino acid aminotransferase compare
AO353_12085 -4.2 -8.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_14505 -4.2 -14.0 ketol-acid reductoisomerase compare
AO353_14400 -4.1 -4.0 Fis family transcriptional regulator compare
AO353_20665 -4.1 -12.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07220 -4.1 -9.1 anthranilate synthase compare
AO353_02070 -4.1 -9.0 prephenate dehydratase compare
AO353_12515 -4.0 -24.2 glutamate synthase compare
AO353_17570 -4.0 -10.3 tripartite tricarboxylate transporter TctA conserved
AO353_07210 -4.0 -6.7 indole-3-glycerol-phosphate synthase compare
AO353_12360 -4.0 -10.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08185 -4.0 -12.2 methionine biosynthesis protein MetW compare
AO353_17595 -3.9 -14.1 histidine kinase conserved
AO353_10710 -3.9 -5.4 tryptophan synthase subunit beta compare
AO353_10670 -3.9 -9.8 shikimate dehydrogenase compare
AO353_22800 -3.9 -5.3 sulfite reductase compare
AO353_08475 -3.8 -11.4 phosphoserine phosphatase compare
AO353_12075 -3.8 -10.0 imidazole glycerol phosphate synthase subunit HisH compare
AO353_14150 -3.8 -2.6 peptidylprolyl isomerase compare
AO353_08180 -3.8 -15.5 homoserine O-acetyltransferase compare
AO353_08425 -3.7 -5.7 Cd(II)/Pb(II)-responsive transcriptional regulator conserved
AO353_08685 -3.7 -11.1 N-acetylglutamate synthase compare
AO353_17575 -3.7 -13.1 hypothetical protein conserved
AO353_05110 -3.6 -13.5 histidinol dehydrogenase compare
AO353_06155 -3.6 -11.1 copper-transporting ATPase compare
AO353_12500 -3.6 -2.5 shikimate kinase compare
AO353_04105 -3.6 -10.4 argininosuccinate synthase compare
AO353_14495 -3.6 -14.4 acetolactate synthase 3 catalytic subunit compare
AO353_08420 -3.5 -15.2 ATPase P conserved
AO353_13165 -3.5 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12365 -3.5 -5.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_12115 -3.4 -4.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_00310 -3.4 -12.9 transaldolase compare
AO353_17580 -3.4 -10.8 tricarboxylic transporter conserved
AO353_09240 -3.4 -5.2 acetylglutamate kinase compare
AO353_08345 -3.4 -11.6 dihydroxy-acid dehydratase compare
AO353_08510 -3.3 -6.7 3-phosphoglycerate dehydrogenase compare
AO353_15925 -3.3 -13.7 2-isopropylmalate synthase compare
AO353_07215 -3.3 -9.0 anthranilate phosphoribosyltransferase compare
AO353_20175 -3.3 -5.4 ATP-dependent Clp protease proteolytic subunit compare
AO353_03590 -3.2 -4.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_06495 -3.2 -7.1 gamma-glutamyl phosphate reductase compare
AO353_16940 -3.2 -8.2 deoxycytidine triphosphate deaminase compare
AO353_07155 -3.2 -10.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14370 -3.2 -8.9 glucose-6-phosphate isomerase compare
AO353_09000 -3.1 -7.8 argininosuccinate lyase compare
AO353_14500 -3.1 -8.9 acetolactate synthase 3 regulatory subunit compare
AO353_11775 -3.0 -9.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_19060 -3.0 -6.8 CysB family transcriptional regulator compare
AO353_00490 -2.9 -4.1 PasA protein compare
AO353_14990 -2.9 -3.4 hypothetical protein compare
AO353_14220 -2.9 -2.8 ribosomal large subunit pseudouridine synthase D compare
AO353_04155 -2.8 -12.0 ornithine carbamoyltransferase compare
AO353_02710 -2.8 -15.0 (p)ppGpp synthetase compare
AO353_17585 -2.8 -11.4 porin conserved
AO353_08165 -2.7 -3.7 pyrroline-5-carboxylate reductase compare
AO353_03020 -2.7 -9.2 arginine N-succinyltransferase compare
AO353_08015 -2.7 -9.3 5,10-methylenetetrahydrofolate reductase compare
AO353_14115 -2.6 -8.5 gamma-glutamyl kinase compare
AO353_10025 -2.6 -16.1 pyruvate carboxylase subunit B compare
AO353_12420 -2.5 -4.5 predicted FeS cluster maintenance protein (from data) compare
AO353_06045 -2.5 -9.6 exodeoxyribonuclease V subunit beta compare
AO353_04175 -2.5 -6.4 glycerol uptake facilitator GlpF compare
AO353_03585 -2.4 -4.0 ATP-dependent DNA helicase RuvA compare
AO353_10030 -2.4 -11.5 pyruvate carboxylase subunit A compare
AO353_13640 -2.4 -5.3 histidine kinase compare
AO353_06040 -2.4 -5.0 exodeoxyribonuclease V subunit alpha compare
AO353_00825 -2.3 -5.3 porin compare
AO353_10705 -2.3 -4.7 tryptophan synthase subunit alpha compare
AO353_13140 -2.3 -7.1 tRNA dimethylallyltransferase compare
AO353_00750 -2.2 -5.5 GntR family transcriptional regulator compare
AO353_05105 -2.2 -10.7 histidinol-phosphate aminotransferase compare
AO353_14405 -2.2 -11.9 ATPase compare
AO353_21625 -2.1 -3.3 Fe/S biogenesis protein NfuA compare
AO353_05075 -2.1 -10.8 adenylylsulfate kinase compare
AO353_04355 -2.0 -3.2 homoserine dehydrogenase compare
AO353_03580 -1.9 -4.0 ATP-dependent DNA helicase RuvB compare
AO353_05690 -1.9 -4.7 SsrA-binding protein compare
AO353_14595 -1.9 -8.6 carbonate dehydratase compare
AO353_05080 -1.8 -10.5 sulfate adenylyltransferase compare
AO353_06050 -1.8 -7.6 exodeoxyribonuclease V subunit gamma compare
AO353_20095 -1.8 -5.9 histidine kinase compare
AO353_04325 -1.8 -1.6 hypothetical protein compare
AO353_22345 -1.8 -9.1 ATPase compare
AO353_14420 -1.7 -4.7 molecular chaperone DnaK compare
AO353_10035 -1.7 -5.9 LysR family transcriptional regulator compare
AO353_02040 -1.6 -2.7 integration host factor subunit beta compare
AO353_02270 -1.6 -4.8 isochorismatase compare
AO353_27650 -1.6 -5.1 cell division protein FtsK compare
AO353_02000 -1.6 -3.8 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_15185 -1.6 -5.4 ATPase compare
AO353_07075 -1.6 -5.5 elongation factor Tu compare
AO353_04180 -1.6 -8.3 glycerol kinase compare
AO353_12345 -1.6 -2.5 twin-arginine protein translocation system subunit TatC compare
AO353_03980 -1.6 -7.3 thiol oxidoreductase conserved
AO353_02685 -1.5 -4.1 phosphoribosylglycinamide formyltransferase compare
AO353_02005 -1.5 -1.5 hypothetical protein compare
AO353_11165 -1.5 -8.1 hypothetical protein compare
AO353_12460 -1.5 -7.4 malate dehydrogenase compare
AO353_27675 -1.5 -7.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_14410 -1.5 -6.9 MFS transporter compare
AO353_01550 -1.5 -4.7 hypothetical protein compare
AO353_24130 -1.4 -2.3 hypothetical protein compare
AO353_08885 -1.4 -10.7 polyphosphate kinase compare
AO353_08470 -1.4 -4.7 RNA pyrophosphohydrolase compare
AO353_12240 -1.4 -4.2 histidine utilization repressor compare
AO353_08780 -1.4 -6.8 5-formyltetrahydrofolate cyclo-ligase compare
AO353_19770 -1.4 -2.5 peptidase compare
AO353_19290 -1.4 -2.6 molybdenum cofactor sulfurase compare
AO353_04565 -1.4 -5.9 nucleoid-associated protein compare
AO353_02810 -1.4 -7.1 histidine kinase compare
AO353_09045 -1.4 -2.1 hypothetical protein compare
AO353_03015 -1.4 -4.3 arginine N-succinyltransferase compare
AO353_10430 -1.4 -3.0 chromosome partitioning protein ParB compare
AO353_07355 -1.4 -5.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_19090 -1.3 -2.3 MarR family transcriptional regulator compare
AO353_09285 -1.3 -7.3 reactive intermediate/imine deaminase compare
AO353_09260 -1.3 -5.6 ribonuclease PH compare
AO353_15490 -1.3 -2.5 hypothetical protein compare
AO353_03975 -1.3 -6.3 peptidase conserved
AO353_02250 -1.3 -1.5 chorismate synthase compare
AO353_22340 -1.3 -4.5 GfdT protein compare
AO353_11530 -1.2 -6.4 diguanylate cyclase compare
AO353_10455 -1.2 -2.0 tRNA modification GTPase MnmE compare
AO353_17750 -1.2 -2.1 transcriptional regulator compare
AO353_26080 -1.2 -2.4 hypothetical protein compare
AO353_08505 -1.2 -7.7 FAD-linked oxidase compare
AO353_06405 -1.2 -4.1 hypothetical protein compare
AO353_15725 -1.2 -3.5 hypothetical protein compare
AO353_10435 -1.2 -6.3 chromosome partitioning protein compare
AO353_09885 -1.2 -1.1 transcriptional regulator PhoU compare
AO353_11040 -1.2 -6.9 citrate transporter conserved
AO353_09560 -1.2 -1.1 type VI secretion protein compare
AO353_06490 -1.1 -2.8 nicotinate-nucleotide adenylyltransferase compare
AO353_11850 -1.1 -4.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_14340 -1.1 -3.3 phospholipid-binding protein compare
AO353_17970 -1.1 -8.7 hypothetical protein compare
AO353_11770 -1.1 -1.8 molecular chaperone Hsp33 compare
AO353_12045 -1.1 -4.1 iron transporter compare
AO353_16425 -1.1 -2.3 Fe-S metabolism protein SufE compare
AO353_02300 -1.1 -2.4 MarR family transcriptional regulator compare
AO353_04015 -1.1 -5.6 histidine kinase compare
AO353_18540 -1.1 -3.0 pseudouridine synthase compare
AO353_23245 -1.0 -2.8 DNA-3-methyladenine glycosylase compare
AO353_09030 -1.0 -1.6 iron donor protein CyaY compare
AO353_28700 -1.0 -2.9 hypothetical protein compare
AO353_26945 -1.0 -2.3 transcriptional regulator compare
AO353_07270 -1.0 -2.3 transcriptional regulator compare
AO353_09040 -1.0 -1.9 diaminopimelate epimerase compare
AO353_18780 -1.0 -4.7 cobyrinic acid a,c-diamide synthase compare
AO353_18985 -1.0 -3.1 hypothetical protein compare
AO353_04055 -1.0 -2.1 methionine--tRNA ligase compare
AO353_06850 -1.0 -3.2 MFS transporter compare
AO353_08995 -1.0 -6.5 chemotaxis protein CheY compare
AO353_06160 -1.0 -3.2 transcriptional regulator compare
AO353_23495 -1.0 -2.6 SAM-dependent methyltransferase compare
AO353_16805 -1.0 -3.7 recombinase RecA compare
AO353_28815 -1.0 -1.4 hypothetical protein compare
AO353_17175 -1.0 -1.9 beta-ketoadipyl CoA thiolase compare
AO353_07575 -0.9 -4.3 DNA polymerase III subunit epsilon compare
AO353_08620 -0.9 -2.0 hypothetical protein compare
AO353_21640 -0.9 -1.4 cobalt transporter compare
AO353_12935 -0.9 -2.6 glycosyltransferase compare
AO353_10825 -0.9 -6.8 hypothetical protein compare
AO353_14395 -0.9 -3.2 poly(A) polymerase compare
AO353_15295 -0.9 -4.0 division/cell wall cluster transcriptional repressor MraZ compare
AO353_05695 -0.9 -6.5 transcriptional regulator PdhR compare
AO353_28565 -0.9 -2.6 hypothetical protein compare
AO353_05520 -0.9 -3.2 nicotinate-nucleotide pyrophosphorylase compare
AO353_23410 -0.9 -1.7 hypothetical protein compare
AO353_03985 -0.9 -3.5 imelysin compare
AO353_01595 -0.9 -1.6 Flp pilus assembly protein CpaB compare
AO353_16605 -0.9 -6.0 protein-L-isoaspartate O-methyltransferase compare
AO353_05880 -0.8 -1.3 plasmid stabilization protein compare
AO353_24340 -0.8 -2.0 TetR family transcriptional regulator compare
AO353_19055 -0.8 -4.9 universal stress protein UspA compare
AO353_05465 -0.8 -6.6 flavodoxin compare
AO353_21055 -0.8 -3.0 glycosyl hydrolase compare
AO353_06455 -0.8 -2.0 D-alanyl-D-alanine carboxypeptidase compare
AO353_10440 -0.8 -3.6 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_23620 -0.8 -1.5 hypothetical protein compare
AO353_00955 -0.8 -2.7 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_19250 -0.8 -1.8 molybdenum cofactor guanylyltransferase compare
AO353_00835 -0.8 -4.1 transporter compare
AO353_09745 -0.8 -1.0 hypothetical protein compare
AO353_14930 -0.8 -2.1 GntR family transcriptional regulator compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas fluorescens FW300-N2E3

For carbon source Trisodium citrate dihydrate across organisms