Experiment set1IT061 for Acidovorax sp. GW101-3H11

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
Ac3H11_2067 -7.6 -5.3 Glucokinase (EC 2.7.1.2) compare
Ac3H11_4401 -7.2 -8.5 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
Ac3H11_4771 -7.1 -9.7 Glutamate 5-kinase (EC 2.7.2.11) compare
Ac3H11_2452 -6.9 -4.8 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
Ac3H11_771 -6.6 -6.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Ac3H11_4277 -6.3 -20.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Ac3H11_769 -6.3 -4.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Ac3H11_1535 -6.1 -8.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Ac3H11_1525 -6.0 -20.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Ac3H11_29 -5.9 -11.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Ac3H11_767 -5.9 -19.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Ac3H11_4278 -5.9 -13.1 Methionine biosynthesis protein MetW compare
Ac3H11_772 -5.8 -6.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Ac3H11_3553 -5.8 -19.3 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
Ac3H11_4276 -5.8 -12.8 Probable transmembrane protein compare
Ac3H11_4034 -5.7 -11.0 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Ac3H11_4095 -5.7 -7.4 Nitrogen regulation protein NR(I) compare
Ac3H11_1528 -5.7 -26.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Ac3H11_3449 -5.6 -6.7 Shikimate kinase I (EC 2.7.1.71) compare
Ac3H11_2034 -5.5 -3.8 General secretion pathway protein K compare
Ac3H11_1533 -5.5 -12.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Ac3H11_2344 -5.4 -8.6 Transcriptional activator MetR compare
Ac3H11_2060 -5.4 -14.4 two-component system, sensor protein compare
Ac3H11_573 -5.4 -7.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
Ac3H11_2064 -5.4 -10.9 glucose ABC transporter, permease component 1 (from data) compare
Ac3H11_3341 -5.3 -3.7 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Ac3H11_4044 -5.3 -11.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Ac3H11_2065 -5.3 -10.7 glucose ABC transporter, permease component 2 (from data) compare
Ac3H11_3045 -5.3 -18.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Ac3H11_2063 -5.3 -7.8 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) compare
Ac3H11_2062 -5.2 -8.3 glucose ABC transporter, substrate-binding component (from data) compare
Ac3H11_1527 -5.1 -9.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Ac3H11_2925 -5.1 -9.1 Chorismate synthase (EC 4.2.3.5) compare
Ac3H11_575 -5.1 -4.9 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
Ac3H11_2574 -5.1 -11.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Ac3H11_2345 -5.0 -19.5 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (EC 2.1.1.14) compare
Ac3H11_574 -4.8 -8.9 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Ac3H11_1534 -4.7 -20.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Ac3H11_4711 -4.7 -5.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Ac3H11_2403 -4.7 -6.4 Alkanesulfonate utilization operon LysR-family regulator CbI compare
Ac3H11_2066 -4.6 -10.4 glucose ABC transporter, ATPase component (from data) compare
Ac3H11_2042 -4.5 -16.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Ac3H11_4092 -4.5 -3.1 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
Ac3H11_4625 -4.4 -8.5 Phenylacetate-coenzyme A ligase (EC 6.2.1.30) compare
Ac3H11_577 -4.4 -13.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Ac3H11_2059 -4.3 -10.8 Transaldolase (EC 2.2.1.2) compare
Ac3H11_4710 -4.3 -24.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Ac3H11_525 -4.2 -11.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Ac3H11_4093 -4.2 -20.6 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
Ac3H11_3838 -4.1 -9.0 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Ac3H11_2608 -4.1 -5.8 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Ac3H11_683 -4.1 -2.9 HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) compare
Ac3H11_4054 -4.1 -9.5 General secretion pathway protein F / Type II secretory pathway, component PulF compare
Ac3H11_4705 -4.0 -12.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
Ac3H11_3241 -3.9 -5.6 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Ac3H11_2575 -3.9 -6.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
Ac3H11_2970 -3.9 -8.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Ac3H11_2032 -3.9 -2.5 General secretion pathway protein M compare
Ac3H11_319 -3.9 -2.6 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
Ac3H11_467 -3.8 -6.4 Thioredoxin compare
Ac3H11_2027 -3.8 -18.6 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) compare
Ac3H11_952 -3.7 -1.9 Cytochrome c551/c552 compare
Ac3H11_1681 -3.6 -5.9 Similar to cobalamin biosynthesis protein CbiB compare
Ac3H11_2395 -3.3 -4.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Ac3H11_3240 -3.3 -2.7 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Ac3H11_3837 -3.3 -11.3 Quinolinate synthetase (EC 2.5.1.72) compare
Ac3H11_2030 -3.3 -8.3 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) compare
Ac3H11_2029 -3.1 -6.7 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) compare
Ac3H11_4473 -3.1 -13.0 Twitching motility protein PilT compare
Ac3H11_3839 -3.1 -12.1 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Ac3H11_3630 -3.1 -4.8 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Ac3H11_2076 -3.0 -5.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Ac3H11_2036 -3.0 -2.2 General secretion pathway protein I compare
Ac3H11_1453 -3.0 -3.6 Preprotein translocase subunit SecG (TC 3.A.5.1.1) compare
Ac3H11_2055 -2.9 -5.7 Probable transcriptional regulator compare
Ac3H11_2038 -2.9 -2.7 General secretion pathway protein G compare
Ac3H11_576 -2.8 -3.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Ac3H11_3857 -2.7 -3.7 FIG136845: Rhodanese-related sulfurtransferase compare
Ac3H11_2464 -2.7 -6.8 ATPase component BioM of energizing module of biotin ECF transporter compare
Ac3H11_3860 -2.7 -8.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Ac3H11_2320 -2.6 -9.2 Transcriptional regulator, XRE family compare
Ac3H11_4091 -2.6 -5.5 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
Ac3H11_768 -2.6 -4.4 Chorismate mutase compare
Ac3H11_2115 -2.5 -6.5 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
Ac3H11_578 -2.5 -5.2 Putative sulfate permease compare
Ac3H11_2456 -2.5 -10.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Ac3H11_3890 -2.4 -10.3 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
Ac3H11_518 -2.4 -4.7 Nitrogen regulatory protein P-II compare
Ac3H11_4845 -2.3 -9.8 Transcriptional regulator, TetR family compare
Ac3H11_2960 -2.3 -1.4 Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Ac3H11_277 -2.3 -6.0 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Ac3H11_2033 -2.2 -4.1 General secretion pathway protein L compare
Ac3H11_363 -2.2 -7.0 PhbF compare
Ac3H11_376 -2.2 -1.6 DNA-binding protein HU-beta compare
Ac3H11_207 -2.2 -4.9 FIG137360: hypothetical protein compare
Ac3H11_781 -2.2 -3.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Ac3H11_4669 -2.1 -4.2 AMP nucleosidase (EC 3.2.2.4) compare
Ac3H11_3882 -2.1 -2.6 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Ac3H11_727 -2.1 -10.4 RNA polymerase sigma-54 factor RpoN compare
Ac3H11_926 -2.1 -5.0 Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-) compare
Ac3H11_2571 -2.1 -4.0 Outer membrane protein A precursor compare
Ac3H11_3824 -2.0 -7.9 L-aspartate oxidase (EC 1.4.3.16) compare
Ac3H11_790 -2.0 -5.2 Glycerol-3-phosphate regulon repressor, DeoR family compare
Ac3H11_4956 -2.0 -6.7 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
Ac3H11_652 -2.0 -7.9 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
Ac3H11_1029 -1.9 -1.8 Putative cytoplasmic protein compare
Ac3H11_1529 -1.9 -5.1 hypothetical protein compare
Ac3H11_526 -1.9 -2.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Ac3H11_951 -1.9 -11.1 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
Ac3H11_1556 -1.9 -8.2 HpcH/HpaI aldolase compare
Ac3H11_362 -1.9 -8.6 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I compare
Ac3H11_2035 -1.9 -2.1 General secretion pathway protein J compare
Ac3H11_3405 -1.9 -3.6 Transcriptional regulator, MarR family compare
Ac3H11_3827 -1.8 -4.7 Aspartate 1-decarboxylase (EC 4.1.1.11) compare
Ac3H11_1650 -1.8 -1.9 FIG00537534: hypothetical protein compare
Ac3H11_4264 -1.8 -5.9 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Ac3H11_3959 -1.8 -4.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Ac3H11_2120 -1.8 -3.4 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
Ac3H11_671 -1.8 -6.9 hypothetical protein compare
Ac3H11_4393 -1.8 -8.6 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Ac3H11_1995 -1.8 -2.8 Tyrosine recombinase XerC compare
Ac3H11_4202 -1.8 -1.7 hypothetical protein compare
Ac3H11_2392 -1.7 -8.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Ac3H11_2170 -1.7 -1.5 Methionine ABC transporter ATP-binding protein compare
Ac3H11_3892 -1.7 -8.6 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
Ac3H11_3891 -1.7 -10.6 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
Ac3H11_456 -1.6 -1.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Ac3H11_3888 -1.6 -6.1 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
Ac3H11_4024 -1.6 -7.3 Sugar kinases, ribokinase family compare
Ac3H11_166 -1.6 -6.6 Glycine cleavage system H protein compare
Ac3H11_3886 -1.6 -3.9 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion compare
Ac3H11_3502 -1.6 -1.2 hypothetical protein compare
Ac3H11_483 -1.6 -1.6 Thioredoxin compare
Ac3H11_1688 -1.6 -5.2 Probable transmembrane protein compare
Ac3H11_2006 -1.6 -2.4 Cell division protein MraZ compare
Ac3H11_4709 -1.6 -10.4 Transposase and inactivated derivatives compare
Ac3H11_132 -1.6 -10.3 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Ac3H11_955 -1.5 -9.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Ac3H11_3589 -1.5 -1.4 FIG00538094: hypothetical protein compare
Ac3H11_3577 -1.5 -2.0 hypothetical protein compare
Ac3H11_4828 -1.5 -1.8 Ferredoxin compare
Ac3H11_770 -1.5 -3.7 Lysine exporter protein (LYSE/YGGA) compare
Ac3H11_4094 -1.5 -4.4 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
Ac3H11_1507 -1.5 -5.0 Homoserine dehydrogenase (EC 1.1.1.3) compare
Ac3H11_3925 -1.5 -4.1 FIG00932626: hypothetical protein compare
Ac3H11_537 -1.4 -10.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Ac3H11_4539 -1.4 -1.8 Protein RcsF compare
Ac3H11_1263 -1.4 -6.7 Response regulator receiver:Transcriptional regulatory protein, C- terminal conserved
Ac3H11_2492 -1.4 -2.8 FIG004453: protein YceG like compare
Ac3H11_4391 -1.4 -6.4 Transcriptional activator of acetoin/glycerol metabolism compare
Ac3H11_505 -1.4 -5.2 Transcriptional regulator, TetR family compare
Ac3H11_3729 -1.4 -1.8 Cytosine deaminase (EC 3.5.4.1) compare
Ac3H11_2171 -1.4 -1.3 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Ac3H11_4177 -1.4 -4.7 Transcriptional regulator, GntR family compare
Ac3H11_4982 -1.3 -8.1 Transcriptional regulator, TetR family compare
Ac3H11_3233 -1.3 -1.7 hypothetical protein compare
Ac3H11_3086 -1.3 -4.6 Regulatory protein of benzoate catabolism compare
Ac3H11_4772 -1.3 -6.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Ac3H11_3884 -1.2 -5.2 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Ac3H11_152 -1.2 -1.2 hypothetical protein compare
Ac3H11_4032 -1.2 -5.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Ac3H11_1387 -1.2 -3.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Ac3H11_1230 -1.2 -7.3 Transcriptional regulator, TetR family compare
Ac3H11_4198 -1.2 -1.0 hypothetical protein compare
Ac3H11_4676 -1.2 -1.1 Cobalt-zinc-cadmium resistance protein compare
Ac3H11_3083 -1.2 -7.1 Benzoyl-CoA oxygenase component A compare
Ac3H11_3358 -1.2 -4.8 AmpG permease compare
Ac3H11_2121 -1.2 -2.8 putative c'cytochrome compare
Ac3H11_2745 -1.1 -2.3 Transcriptional regulator, TetR family compare
Ac3H11_4224 -1.1 -5.1 tRNA-Arg-CCT compare
Ac3H11_3826 -1.1 -2.4 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Ac3H11_3914 -1.1 -1.5 Transcriptional regulator, LysR family compare
Ac3H11_412 -1.1 -4.8 3'-to-5' exoribonuclease RNase R compare
Ac3H11_3095 -1.1 -3.1 tRNA-Ile-GAT compare
Ac3H11_2002 -1.1 -2.2 C4-type zinc finger protein, DksA/TraR family compare
Ac3H11_778 -1.1 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Ac3H11_1508 -1.1 -6.6 Aspartate aminotransferase (EC 2.6.1.1) compare
Ac3H11_2305 -1.1 -4.4 COG1496: Uncharacterized conserved protein compare
Ac3H11_268 -1.1 -2.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Ac3H11_1319 -1.1 -7.4 membrane protein, putative compare
Ac3H11_4847 -1.1 -1.6 hypothetical protein compare
Ac3H11_3402 -1.1 -3.6 Nitrogen regulatory protein P-II compare
Ac3H11_861 -1.1 -3.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Ac3H11_3928 -1.1 -5.4 Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-) compare
Ac3H11_3097 -1.0 -9.6 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Ac3H11_1209 -1.0 -3.5 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Ac3H11_2835 -1.0 -2.7 DNA topoisomerase III (EC 5.99.1.2) compare
Ac3H11_4070 -1.0 -1.8 hypothetical protein compare
Ac3H11_2272 -1.0 -6.2 Biotin synthase (EC 2.8.1.6) compare
Ac3H11_4559 -1.0 -3.0 Transcriptional regulator, MarR family compare
Ac3H11_1135 -1.0 -1.9 Thiamin biosynthesis lipoprotein ApbE compare
Ac3H11_437 -1.0 -2.8 Transcription elongation factor GreA compare
Ac3H11_3863 -1.0 -2.6 Transcriptional activator protein LysR compare
Ac3H11_4216 -1.0 -1.2 hypothetical protein compare
Ac3H11_1211 -1.0 -2.8 Outer membrane protein assembly factor YaeT precursor compare
Ac3H11_4672 -1.0 -1.8 Ankyrin compare
Ac3H11_4446 -1.0 -5.5 Cytochrome c5 compare
Ac3H11_1569 -1.0 -4.5 Translation elongation factor LepA compare
Ac3H11_3087 -1.0 -1.5 P-hydroxylaminobenzoate lyase compare
Ac3H11_2123 -0.9 -5.1 Histone acetyltransferase HPA2 and related acetyltransferases compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Glucose in Acidovorax sp. GW101-3H11

For carbon source D-Glucose across organisms