Experiment set1IT061 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 5 generations

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS00735 +1.1 6.3 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS00730 +1.1 4.8 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS00725 +1.0 5.1 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS06325 +1.0 4.8 hypothetical protein compare
MMP_RS07695 +0.9 5.0 DUF3236 domain-containing protein compare
MMP_RS06395 +0.8 3.2 ThiF family adenylyltransferase compare
MMP_RS06975 +0.8 3.0 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS06725 +0.8 5.2 hypothetical protein compare
MMP_RS00395 +0.8 2.1 MGMT family protein compare
MMP_RS08310 +0.8 2.6 TMEM165/GDT1 family protein compare
MMP_RS06540 +0.7 3.4 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS01570 +0.7 2.1 hypothetical protein compare
MMP_RS02045 +0.7 2.0 tRNA-Met compare
MMP_RS02605 +0.7 1.1 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS03450 +0.7 1.8 glycine synthesis protein GlyXS (from data) compare
MMP_RS08275 +0.7 4.7 hypothetical protein compare
MMP_RS07840 +0.7 2.8 ribonuclease III compare
MMP_RS00315 +0.6 3.9 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS07345 +0.6 3.5 glycine synthesis protein GlyXL (from data) compare
MMP_RS07765 +0.6 4.7 sodium:alanine symporter family protein compare
MMP_RS09050 +0.6 3.3 CAP domain-containing protein compare
MMP_RS06335 +0.6 1.9 HAD family hydrolase compare
MMP_RS06520 +0.6 1.8 DUF1786 domain-containing protein compare
MMP_RS00945 +0.6 1.3 PadR family transcriptional regulator compare
MMP_RS01650 +0.6 0.8 sulfurtransferase TusA family protein compare
MMP_RS03465 +0.6 1.2 adenine phosphoribosyltransferase compare
MMP_RS06015 +0.6 3.3 flavodoxin family protein compare
MMP_RS07645 +0.5 1.7 aldehyde dehydrogenase family protein compare
MMP_RS02475 +0.5 1.0 hypothetical protein compare
MMP_RS07850 +0.5 1.7 prephenate dehydratase compare
MMP_RS00155 +0.5 3.4 heavy metal-binding domain-containing protein compare
MMP_RS06930 +0.5 3.3 MBL fold metallo-hydrolase compare
MMP_RS07700 +0.5 2.9 DUF1188 domain-containing protein compare
MMP_RS08845 +0.5 4.4 archaellum operon transcriptional activator EarA family protein compare
MMP_RS08940 +0.5 1.0 MetS family NSS transporter small subunit compare
MMP_RS01785 +0.5 1.8 hypothetical protein compare
MMP_RS01055 +0.5 1.9 hypothetical protein compare
MMP_RS06590 +0.5 2.2 GNAT family N-acetyltransferase compare
MMP_RS06710 +0.5 2.9 selenium-binding protein compare
MMP_RS00290 +0.5 3.2 hypothetical protein compare
MMP_RS04850 +0.5 3.5 UPF0254 family protein compare
MMP_RS05985 +0.5 1.5 hypothetical protein compare
MMP_RS05355 +0.4 0.6 hypothetical protein compare
MMP_RS08850 +0.4 3.9 hypothetical protein compare
MMP_RS08980 +0.4 2.0 hypothetical protein compare
MMP_RS05795 +0.4 2.5 redox-regulated ATPase YchF compare
MMP_RS06860 +0.4 1.1 4Fe-4S binding protein compare
MMP_RS00185 +0.4 3.2 potassium channel protein compare
MMP_RS05865 +0.4 1.4 hypothetical protein compare
MMP_RS05365 +0.4 0.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS02470 +0.4 0.9 helix-turn-helix transcriptional regulator compare
MMP_RS03775 +0.4 1.7 4Fe-4S dicluster domain-containing protein compare
MMP_RS03395 +0.4 2.5 hypothetical protein compare
MMP_RS07650 +0.4 2.9 TldD/PmbA family protein compare
MMP_RS08930 +0.4 0.8 hypothetical protein compare
MMP_RS00655 +0.4 1.2 hypothetical protein compare
MMP_RS07835 +0.4 1.5 TldD/PmbA family protein compare
MMP_RS08325 +0.4 2.8 hypothetical protein compare
MMP_RS00450 +0.4 1.2 4Fe-4S binding protein compare
MMP_RS03220 +0.4 1.5 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS08555 +0.4 1.1 hypothetical protein compare
MMP_RS05975 +0.4 1.0 hypothetical protein compare
MMP_RS06490 +0.4 1.4 hypothetical protein compare
MMP_RS08390 +0.4 1.5 DUF5400 domain-containing protein compare
MMP_RS05715 +0.4 2.8 hypothetical protein compare
MMP_RS04610 +0.3 1.8 Dabb family protein compare
MMP_RS01165 +0.3 2.0 DUF434 domain-containing protein compare
MMP_RS03890 +0.3 2.5 DUF2540 domain-containing protein compare
MMP_RS06910 +0.3 1.8 RlmF-related methyltransferase compare
MMP_RS01980 +0.3 3.0 trimeric intracellular cation channel family protein compare
MMP_RS05780 +0.3 2.8 multidrug resistance efflux transporter family protein compare
MMP_RS04305 +0.3 1.1 hypothetical protein compare
MMP_RS08080 +0.3 2.0 YchF/TatD family DNA exonuclease compare
MMP_RS07115 +0.3 2.0 MBL fold metallo-hydrolase compare
MMP_RS05675 +0.3 1.2 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS03895 +0.3 1.5 hypothetical protein compare
MMP_RS08480 +0.3 2.2 molybdate ABC transporter substrate-binding protein compare
MMP_RS06005 +0.3 1.7 heavy-metal-associated domain-containing protein compare
MMP_RS08130 +0.3 2.5 IGHMBP2 family helicase compare
MMP_RS08380 +0.3 1.9 phosphatase PAP2 family protein compare
MMP_RS00295 +0.3 0.9 gamma carbonic anhydrase family protein compare
MMP_RS00325 +0.3 0.9 RNA-binding protein compare
MMP_RS07915 +0.3 1.3 DUF4870 domain-containing protein compare
MMP_RS08640 +0.3 2.1 TIM barrel protein compare
MMP_RS00430 +0.3 0.9 hypothetical protein compare
MMP_RS08685 +0.3 2.1 hypothetical protein compare
MMP_RS08105 +0.3 2.0 6-carboxyhexanoate--CoA ligase compare
MMP_RS00385 +0.3 1.6 P-II family nitrogen regulator compare
MMP_RS00855 +0.3 2.0 DUF367 family protein compare
MMP_RS08265 +0.3 1.4 rubrerythrin compare
MMP_RS00990 +0.3 0.8 hypothetical protein compare
MMP_RS01630 +0.3 2.4 N-glycosylase/DNA lyase compare
MMP_RS06530 +0.3 1.6 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS02740 +0.3 1.1 hypothetical protein compare
MMP_RS02680 +0.3 1.2 ABC transporter permease compare
MMP_RS06735 +0.3 1.9 class I SAM-dependent rRNA methyltransferase compare
MMP_RS05090 +0.3 1.4 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS03910 +0.3 0.7 hypothetical protein compare
MMP_RS05680 +0.3 1.8 phosphate signaling complex protein PhoU compare
MMP_RS05275 +0.3 2.2 AI-2E family transporter compare
MMP_RS05695 +0.3 1.7 phospholipase D-like domain-containing protein compare
MMP_RS03790 +0.3 1.9 hypothetical protein compare
MMP_RS06170 +0.3 1.9 ABC transporter ATP-binding protein compare
MMP_RS02490 +0.3 1.3 hypothetical protein compare
MMP_RS06905 +0.3 1.1 hypothetical protein compare
MMP_RS08670 +0.3 1.4 metallophosphoesterase compare
MMP_RS08500 +0.3 1.2 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS01620 +0.3 1.0 hypothetical protein compare
MMP_RS08470 +0.3 1.6 ATP-binding cassette domain-containing protein compare
MMP_RS06500 +0.3 1.7 ATP-binding protein compare
MMP_RS02905 +0.3 1.4 2-thiouracil desulfurase family protein compare
MMP_RS08350 +0.3 0.4 hypothetical protein compare
MMP_RS08665 +0.3 2.3 hypothetical protein compare
MMP_RS07855 +0.3 2.1 class I SAM-dependent methyltransferase compare
MMP_RS00545 +0.3 1.4 XRE family transcriptional regulator compare
MMP_RS07895 +0.3 1.5 cytochrome c compare
MMP_RS04985 +0.3 1.3 DUF2180 family protein compare
MMP_RS07715 +0.3 2.1 YfcE family phosphodiesterase compare
MMP_RS07120 +0.3 1.8 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS08235 +0.3 1.3 hypothetical protein compare
MMP_RS08580 +0.3 1.3 flagellin compare
MMP_RS03535 +0.3 0.9 helix-turn-helix transcriptional regulator compare
MMP_RS07925 +0.3 1.0 haloacid dehalogenase compare
MMP_RS06150 +0.2 1.8 hypothetical protein compare
MMP_RS02595 +0.2 0.5 putative zinc-binding protein compare
MMP_RS02260 +0.2 1.9 lactate utilization protein compare
MMP_RS04145 +0.2 0.7 hypothetical protein compare
MMP_RS00660 +0.2 1.9 alkaline phosphatase family protein compare
MMP_RS08260 +0.2 1.7 DUF99 family protein compare
MMP_RS08615 +0.2 0.7 flagellar protein G compare
MMP_RS07590 +0.2 1.8 hypothetical protein compare
MMP_RS01090 +0.2 1.9 ABC transporter substrate-binding protein compare
MMP_RS00540 +0.2 1.4 PLP-dependent aminotransferase family protein compare
MMP_RS07550 +0.2 1.9 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS04105 +0.2 1.6 MarR family transcriptional regulator compare
MMP_RS08475 +0.2 1.4 ABC transporter permease compare
MMP_RS02690 +0.2 1.2 FmdE family protein compare
MMP_RS01635 +0.2 1.2 thiamine pyrophosphate-dependent enzyme compare
MMP_RS01455 +0.2 1.6 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS04995 +0.2 1.5 hypothetical protein compare
MMP_RS02300 +0.2 1.2 NAD(P)H-dependent oxidoreductase compare
MMP_RS05660 +0.2 1.5 phosphate ABC transporter substrate-binding protein compare
MMP_RS00830 +0.2 1.0 purine phosphoribosyltransferase family protein compare
MMP_RS07130 +0.2 1.5 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS08700 +0.2 1.4 hypothetical protein compare
MMP_RS01655 +0.2 0.8 DsrE family protein compare
MMP_RS03520 +0.2 0.7 YwbE family protein compare
MMP_RS07985 +0.2 1.6 nitroreductase family protein compare
MMP_RS06280 +0.2 1.3 alpha-glucan family phosphorylase compare
MMP_RS06250 +0.2 1.3 hypothetical protein compare
MMP_RS08095 +0.2 1.0 dethiobiotin synthase compare
MMP_RS02370 +0.2 1.1 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS07860 +0.2 0.3 hypothetical protein compare
MMP_RS02510 +0.2 1.5 site-specific integrase compare
MMP_RS00035 +0.2 1.5 DUF2098 family protein compare
MMP_RS03820 +0.2 1.1 EamA family transporter compare
MMP_RS02895 +0.2 1.2 DHH family phosphoesterase compare
MMP_RS03800 +0.2 0.7 hypothetical protein compare
MMP_RS05820 +0.2 1.4 RNA-binding transcriptional accessory protein compare
MMP_RS09030 +0.2 1.1 hypothetical protein compare
MMP_RS07140 +0.2 1.7 TIGR00341 family protein compare
MMP_RS03745 +0.2 1.3 phenylacetate--CoA ligase compare
MMP_RS07560 +0.2 1.0 prefoldin subunit alpha compare
MMP_RS04530 +0.2 1.2 ABC transporter permease compare
MMP_RS00630 +0.2 1.0 ECF transporter S component compare
MMP_RS06375 +0.2 0.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS02020 +0.2 0.7 gamma-glutamylcyclotransferase compare
MMP_RS08625 +0.2 1.4 type II/IV secretion system ATPase subunit compare
MMP_RS04205 +0.2 1.0 carboxymuconolactone decarboxylase family protein compare
MMP_RS08610 +0.2 1.4 flagellar protein F compare
MMP_RS02440 +0.2 1.1 hypothetical protein compare
MMP_RS03655 +0.2 1.3 DUF1894 domain-containing protein compare
MMP_RS02825 +0.2 1.5 mechanosensitive ion channel family protein compare
MMP_RS01675 +0.2 0.5 hypothetical protein compare
MMP_RS09060 +0.2 1.4 hypothetical protein compare
MMP_RS01095 +0.2 1.2 iron ABC transporter permease compare
MMP_RS00940 +0.2 1.1 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein compare
MMP_RS03965 +0.2 0.6 hypothetical protein compare
MMP_RS02960 +0.2 1.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS03625 +0.2 0.9 cell wall-binding protein compare
MMP_RS01060 +0.2 1.5 calcium/sodium antiporter compare
MMP_RS00800 +0.2 1.5 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05960 +0.2 1.3 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS08620 +0.2 1.0 flagellar accessory protein FlaH compare
MMP_RS06115 +0.2 1.3 class II aldolase/adducin family protein compare
MMP_RS08630 +0.2 1.0 archaellar assembly protein FlaJ compare
MMP_RS08230 +0.2 1.3 50S ribosomal protein L11 methyltransferase compare
MMP_RS00535 +0.2 0.3 TIGR00375 family protein compare
MMP_RS02675 +0.2 0.8 hypothetical protein compare
MMP_RS05085 +0.2 1.1 AAA family ATPase compare
MMP_RS01465 +0.2 0.7 hypothetical protein compare
MMP_RS08285 +0.2 1.1 serine/threonine protein kinase compare
MMP_RS00480 +0.2 1.0 hypothetical protein compare
MMP_RS05785 +0.2 1.4 ATP-binding protein compare
MMP_RS03740 +0.2 0.6 indolepyruvate oxidoreductase subunit beta compare
MMP_RS02685 +0.2 1.2 molybdate ABC transporter substrate-binding protein compare
MMP_RS00650 +0.2 1.1 ABC transporter ATP-binding protein compare
MMP_RS00085 +0.2 1.0 DNA cytosine methyltransferase compare
MMP_RS07675 +0.2 1.5 S-layer protein compare
MMP_RS03545 +0.2 1.1 ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community 1,3-Propanediol across organisms