Experiment set1IT061 for Pantoea sp. MT58

Compare to:

copper (II) chloride dihydrate 5 uM, aerobic

200 most important genes:

  gene name fitness t score description  
IAI47_09040 -6.7 -4.4 NAD-dependent epimerase compare
IAI47_13685 -6.3 -4.8 Tol-Pal system protein TolB compare
IAI47_16205 -6.0 -7.2 threonine synthase compare
IAI47_17225 -5.9 -18.6 sulfite reductase subunit alpha compare
IAI47_00655 -5.8 -5.1 glycosyltransferase family 4 protein compare
IAI47_16015 -5.8 -6.9 3-isopropylmalate dehydratase small subunit compare
IAI47_17220 -5.7 -26.8 glutamate synthase large subunit compare
IAI47_07070 -5.5 -9.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_00905 -5.4 -16.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_07085 -5.4 -16.2 histidinol-phosphate transaminase compare
IAI47_16350 -5.3 -11.3 phosphoserine phosphatase compare
IAI47_00895 -5.2 -21.9 phosphoenolpyruvate carboxylase compare
IAI47_09175 -5.2 -12.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_00920 -5.2 -19.2 argininosuccinate lyase compare
IAI47_00915 -5.2 -20.1 argininosuccinate synthase compare
IAI47_09180 -5.1 -12.4 anthranilate phosphoribosyltransferase compare
IAI47_07065 -5.1 -14.4 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_14355 -5.1 -12.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_06235 -5.1 -10.3 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_07060 -5.1 -14.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_16010 -5.0 -20.7 3-isopropylmalate dehydratase large subunit compare
IAI47_14350 -5.0 -9.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_16080 -4.9 -11.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_16210 -4.9 -16.1 homoserine kinase compare
IAI47_00910 -4.9 -13.8 acetylglutamate kinase compare
IAI47_03975 -4.9 -18.8 amino-acid N-acetyltransferase compare
IAI47_07090 -4.9 -14.9 histidinol dehydrogenase compare
IAI47_05275 -4.9 -9.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_03725 -4.8 -12.5 phosphoglycerate dehydrogenase compare
IAI47_04150 -4.8 -17.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_04895 -4.8 -6.5 pyridoxine 5'-phosphate synthase compare
IAI47_16115 -4.8 -24.8 carbamoyl-phosphate synthase large subunit compare
IAI47_18015 -4.8 -19.6 homoserine O-succinyltransferase compare
IAI47_07095 -4.7 -14.0 ATP phosphoribosyltransferase compare
IAI47_00600 -4.7 -14.6 orotate phosphoribosyltransferase compare
IAI47_00900 -4.7 -17.8 acetylornithine deacetylase compare
IAI47_16830 -4.7 -18.2 ornithine carbamoyltransferase compare
IAI47_07080 -4.7 -12.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_01050 -4.7 -22.0 ketol-acid reductoisomerase compare
IAI47_09190 -4.6 -14.7 anthranilate synthase component 1 compare
IAI47_04180 -4.6 -16.9 sulfate adenylyltransferase subunit CysD compare
IAI47_09165 -4.6 -9.8 tryptophan synthase subunit alpha compare
IAI47_18040 -4.6 -22.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_10520 -4.5 -4.4 pyridoxamine 5'-phosphate oxidase compare
IAI47_00880 -4.5 -20.1 cystathionine gamma-synthase compare
IAI47_15115 -4.5 -10.0 glutamate-5-semialdehyde dehydrogenase compare
IAI47_13180 -4.5 -10.8 manganese-binding transcriptional regulator MntR compare
IAI47_12865 -4.4 -12.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_07075 -4.4 -12.5 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_03860 -4.4 -17.4 diaminopimelate decarboxylase compare
IAI47_13745 -4.4 -3.0 2-oxoglutarate dehydrogenase E1 component compare
IAI47_09170 -4.4 -13.8 tryptophan synthase subunit beta compare
IAI47_02695 -4.4 -16.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_04175 -4.4 -15.4 uroporphyrinogen-III C-methyltransferase compare
IAI47_14945 -4.4 -3.0 pyrroline-5-carboxylate reductase compare
IAI47_04930 -4.3 -24.5 phosphoribosylformylglycinamidine synthase compare
IAI47_01035 -4.3 -22.2 dihydroxy-acid dehydratase compare
IAI47_01030 -4.3 -17.7 branched-chain amino acid transaminase compare
IAI47_08085 -4.3 -8.7 helix-turn-helix domain-containing protein compare
IAI47_04155 -4.3 -17.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_04190 -4.3 -8.5 adenylyl-sulfate kinase compare
IAI47_13900 -4.3 -21.5 asparagine synthase B compare
IAI47_13690 -4.2 -1.6 cell envelope integrity protein TolA compare
IAI47_04185 -4.2 -20.6 sulfate adenylyltransferase subunit CysN compare
IAI47_17185 -4.1 -2.9 RNA polymerase factor sigma-54 compare
IAI47_15635 -4.1 -3.8 RNA polymerase-binding protein DksA compare
IAI47_16120 -4.1 -14.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_05180 -4.0 -16.1 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_13740 -4.0 -2.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_16215 -4.0 -20.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_16000 -4.0 -19.0 2-isopropylmalate synthase compare
IAI47_16005 -3.9 -14.1 3-isopropylmalate dehydrogenase compare
IAI47_06275 -3.9 -19.7 amidophosphoribosyltransferase compare
IAI47_01040 -3.8 -13.8 threonine ammonia-lyase, biosynthetic compare
IAI47_00780 -3.8 -5.8 6-phosphofructokinase compare
IAI47_18240 -3.8 -2.6 NAD(P)H-flavin reductase compare
IAI47_07165 -3.8 -3.7 exodeoxyribonuclease I compare
IAI47_15120 -3.8 -8.8 glutamate 5-kinase compare
IAI47_18045 -3.7 -10.8 phosphoribosylamine--glycine ligase compare
IAI47_16860 -3.7 -17.3 aspartate carbamoyltransferase compare
IAI47_13700 -3.6 -7.0 Tol-Pal system protein TolQ compare
IAI47_12705 -3.6 -15.3 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_09275 -3.6 -9.2 orotidine-5'-phosphate decarboxylase compare
IAI47_00450 -3.6 -13.4 nitrogen regulation protein NR(I) compare
IAI47_12215 -3.5 -13.6 dihydroorotase compare
IAI47_09360 -3.4 -2.3 peptide ABC transporter ATP-binding protein SapF compare
IAI47_17035 -3.4 -3.3 ribosome maturation factor RimP compare
IAI47_00455 -3.4 -12.3 nitrogen regulation protein NR(II) compare
IAI47_09240 -3.3 -2.3 HTH-type transcriptional regulator CysB compare
IAI47_00760 -3.2 -5.0 envelope stress response regulator transcription factor CpxR compare
IAI47_04160 -3.1 -12.9 phosphoadenylyl-sulfate reductase compare
IAI47_15810 -3.1 -5.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_18830 -3.1 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_12915 -3.0 -11.8 leucine-responsive transcriptional regulator Lrp compare
IAI47_17965 -3.0 -14.5 glucose-6-phosphate isomerase compare
IAI47_13770 -2.9 -13.5 citrate synthase compare
IAI47_00300 -2.9 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_03855 -2.8 -8.5 LysR family transcriptional regulator compare
IAI47_04410 -2.8 -14.0 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_17020 -2.7 -3.1 30S ribosome-binding factor RbfA compare
IAI47_05390 -2.7 -7.9 sulfate/thiosulfate ABC transporter permease CysT compare
IAI47_01955 -2.7 -11.5 aspartate aminotransferase family protein compare
IAI47_13635 -2.6 -9.1 quinolinate synthase NadA compare
IAI47_00460 -2.5 -1.7 glutamate--ammonia ligase compare
IAI47_18410 -2.5 -5.3 diaminopimelate epimerase compare
IAI47_09185 -2.5 -4.9 glutamine amidotransferase compare
IAI47_05400 -2.4 -8.8 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI47_09010 -2.4 -6.9 formyltetrahydrofolate deformylase compare
IAI47_19945 -2.3 -1.5 hypothetical protein compare
IAI47_06245 -2.3 -4.4 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_16870 -2.3 -6.9 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_18315 -2.2 -6.2 HTH-type transcriptional regulator MetR compare
IAI47_06980 -2.1 -4.9 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_10320 -2.1 -1.3 Rrf2 family transcriptional regulator compare
IAI47_05395 -2.1 -11.2 sulfate/thiosulfate ABC transporter permease CysW compare
IAI47_18270 -2.1 -3.9 twin-arginine translocase TatA/TatE family subunit compare
IAI47_03375 -2.1 -9.8 peptide chain release factor 3 compare
IAI47_17255 -2.0 -2.4 DUF1043 family protein compare
IAI47_18265 -2.0 -2.0 Sec-independent protein translocase subunit TatB compare
IAI47_01135 -2.0 -1.1 hypothetical protein compare
IAI47_05385 -2.0 -11.8 sulfate ABC transporter substrate-binding protein compare
IAI47_13695 -1.9 -1.0 colicin uptake protein TolR compare
IAI47_05070 -1.9 -1.0 outer membrane protein assembly factor BamB compare
IAI47_06750 -1.9 -10.6 outer membrane permeability protein SanA compare
IAI47_15485 -1.9 -1.9 molecular chaperone Skp compare
IAI47_17235 -1.9 -9.7 stringent starvation protein A compare
IAI47_02090 -1.9 -3.8 elongation factor Tu compare
IAI47_02585 -1.9 -4.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_15845 -1.9 -9.7 carboxylating nicotinate-nucleotide diphosphorylase compare
IAI47_12645 -1.9 -4.0 porin OmpA compare
IAI47_15700 -1.8 -10.0 multicopper oxidase CueO conserved
IAI47_00770 -1.8 -1.2 general stress protein compare
IAI47_21035 -1.7 -3.7 TetR/AcrR family transcriptional regulator compare
IAI47_12060 -1.7 -4.2 beta-ketoacyl-ACP synthase II compare
IAI47_18840 -1.7 -3.2 membrane protein insertion efficiency factor YidD compare
IAI47_16085 -1.7 -1.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_05465 -1.7 -5.0 bile acid:sodium symporter compare
IAI47_15540 -1.7 -9.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_15995 -1.6 -2.6 leu operon leader peptide compare
IAI47_11450 -1.6 -5.8 ankyrin repeat domain-containing protein compare
IAI47_04835 -1.6 -7.5 ATP-dependent RNA helicase SrmB compare
IAI47_05155 -1.6 -11.9 polyphosphate kinase 1 compare
IAI47_06355 -1.6 -8.5 transcriptional regulator LrhA compare
IAI47_08445 -1.5 -1.7 Holliday junction branch migration protein RuvA compare
IAI47_05525 -1.5 -1.5 tRNA-Ala compare
IAI47_16220 -1.5 -3.6 thr operon leader peptide compare
IAI47_15345 -1.5 -10.8 murein transglycosylase D compare
IAI47_18145 -1.5 -2.2 elongation factor Tu compare
IAI47_14395 -1.5 -6.0 Cu(I)-responsive transcriptional regulator conserved
IAI47_11760 -1.4 -1.6 TonB-dependent siderophore receptor compare
IAI47_13950 -1.4 -1.3 PhoH family protein compare
IAI47_04400 -1.4 -4.3 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_04805 -1.4 -4.3 outer membrane protein assembly factor BamE compare
IAI47_03550 -1.3 -7.9 membrane-bound lytic murein transglycosylase MltC compare
IAI47_00675 -1.3 -10.7 glycosyltransferase family 9 protein compare
IAI47_12050 -1.3 -7.4 cell division protein YceG conserved
IAI47_17005 -1.3 -5.6 polyribonucleotide nucleotidyltransferase compare
IAI47_13840 -1.3 -3.1 replication initiation negative regulator SeqA compare
IAI47_13765 -1.3 -2.2 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_04845 -1.3 -9.4 L-aspartate oxidase compare
IAI47_06320 -1.3 -5.3 phosphate acetyltransferase compare
IAI47_13925 -1.2 -1.5 tRNA-Met compare
IAI47_14680 -1.2 -5.1 cytochrome o ubiquinol oxidase subunit II compare
IAI47_06135 -1.2 -2.8 phosphohistidine phosphatase SixA compare
IAI47_01045 -1.2 -4.7 HTH-type transcriptional activator IlvY compare
IAI47_03685 -1.2 -6.8 erythrose-4-phosphate dehydrogenase compare
IAI47_12760 -1.2 -7.2 porin OmpF compare
IAI47_05440 -1.2 -6.9 cysteine synthase A compare
IAI47_14775 -1.2 -2.6 transcriptional regulator NrdR compare
IAI47_07020 -1.2 -0.9 hypothetical protein compare
IAI47_04120 -1.2 -8.2 GTP diphosphokinase compare
IAI47_09720 -1.2 -6.3 TetR/AcrR family transcriptional regulator compare
IAI47_11310 -1.1 -3.1 redox-regulated ATPase YchF compare
IAI47_03610 -1.1 -4.1 YqgE/AlgH family protein compare
IAI47_15595 -1.1 -1.6 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_13935 -1.1 -1.4 tRNA-Gln compare
IAI47_07475 -1.1 -1.3 hypothetical protein compare
IAI47_17120 -1.1 -1.8 BolA family iron metabolism protein IbaG compare
IAI47_08775 -1.1 -6.0 TerC family protein compare
IAI47_05175 -1.1 -5.8 phosphoribosylglycinamide formyltransferase compare
IAI47_14670 -1.1 -6.8 hypothetical protein compare
IAI47_21655 -1.1 -0.8 LacI family DNA-binding transcriptional regulator compare
IAI47_09580 -1.1 -2.6 FNR family transcription factor compare
IAI47_14040 -1.1 -8.3 D-alanyl-D-alanine carboxypeptidase DacA compare
IAI47_15660 -1.1 -4.8 pantoate--beta-alanine ligase compare
IAI47_03555 -1.1 -4.3 oxidative damage protection protein compare
IAI47_03240 -1.0 -3.2 TonB system transport protein ExbD compare
IAI47_15655 -1.0 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
IAI47_00465 -1.0 -2.6 ribosome-dependent GTPase TypA compare
IAI47_19890 -1.0 -2.0 hypothetical protein compare
IAI47_03680 -1.0 -6.5 transketolase compare
IAI47_06270 -1.0 -5.3 colicin V production protein compare
IAI47_17560 -1.0 -1.0 ROK family transcriptional regulator compare
IAI47_06325 -1.0 -3.8 acetate kinase compare
IAI47_12570 -1.0 -1.1 tRNA-Ser compare
IAI47_18215 -1.0 -1.5 Trk system potassium transporter TrkH compare
IAI47_12110 -1.0 -2.2 ribonuclease E compare
IAI47_06360 -0.9 -1.4 NADH-quinone oxidoreductase subunit A compare
IAI47_03645 -0.9 -8.0 O-antigen ligase family protein compare
IAI47_10835 -0.9 -1.0 tRNA-Val compare


Specific Phenotypes

For 9 genes in this experiment

For stress copper (II) chloride dihydrate in Pantoea sp. MT58

For stress copper (II) chloride dihydrate across organisms