Experiment set1IT060 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium Fumarate dibasic carbon source

200 most important genes:

  gene name fitness t score description  
AO353_00430 -5.0 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_20625 -4.9 -3.4 3-isopropylmalate dehydratase compare
AO353_07220 -4.6 -7.6 anthranilate synthase compare
AO353_12520 -4.5 -11.4 glutamate synthase compare
AO353_12090 -4.5 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_02070 -4.5 -8.0 prephenate dehydratase compare
AO353_20540 -4.4 -8.9 aromatic amino acid aminotransferase compare
AO353_05115 -4.3 -11.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20695 -4.3 -7.7 O-succinylhomoserine sulfhydrylase compare
AO353_20635 -4.3 -14.7 3-isopropylmalate dehydrogenase compare
AO353_12070 -4.3 -9.6 imidazoleglycerol-phosphate dehydratase compare
AO353_13070 -4.2 -9.1 phosphoserine phosphatase compare
AO353_11775 -4.2 -9.0 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_07230 -4.2 -18.4 anthranilate synthase compare
AO353_20665 -4.2 -12.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20620 -4.1 -9.0 isopropylmalate isomerase compare
AO353_14505 -4.1 -13.9 ketol-acid reductoisomerase compare
AO353_13165 -4.1 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_10670 -4.0 -9.7 shikimate dehydrogenase compare
AO353_12360 -4.0 -9.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08475 -3.9 -11.0 phosphoserine phosphatase compare
AO353_12085 -3.9 -9.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12515 -3.9 -23.7 glutamate synthase compare
AO353_08185 -3.9 -12.5 methionine biosynthesis protein MetW compare
AO353_07215 -3.9 -9.3 anthranilate phosphoribosyltransferase compare
AO353_08685 -3.8 -10.5 N-acetylglutamate synthase compare
AO353_09000 -3.8 -6.4 argininosuccinate lyase compare
AO353_02075 -3.8 -13.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_07155 -3.7 -9.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_08345 -3.7 -10.8 dihydroxy-acid dehydratase compare
AO353_12500 -3.6 -2.5 shikimate kinase compare
AO353_09240 -3.6 -4.9 acetylglutamate kinase compare
AO353_14495 -3.6 -13.7 acetolactate synthase 3 catalytic subunit compare
AO353_07210 -3.6 -7.4 indole-3-glycerol-phosphate synthase compare
AO353_19060 -3.6 -5.9 CysB family transcriptional regulator compare
AO353_08180 -3.6 -15.5 homoserine O-acetyltransferase compare
AO353_02800 -3.5 -13.4 C4-dicarboxylate transporter conserved
AO353_12075 -3.5 -10.6 imidazole glycerol phosphate synthase subunit HisH compare
AO353_04105 -3.5 -10.7 argininosuccinate synthase compare
AO353_11860 -3.5 -9.2 Fis family transcriptional regulator conserved
AO353_12115 -3.4 -4.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_05110 -3.4 -12.2 histidinol dehydrogenase compare
AO353_14940 -3.3 -5.9 malate:quinone oxidoreductase compare
AO353_14500 -3.2 -9.0 acetolactate synthase 3 regulatory subunit compare
AO353_10710 -3.2 -6.9 tryptophan synthase subunit beta compare
AO353_08510 -3.2 -6.7 3-phosphoglycerate dehydrogenase compare
AO353_06495 -3.1 -7.1 gamma-glutamyl phosphate reductase compare
AO353_14115 -3.1 -8.1 gamma-glutamyl kinase compare
AO353_04155 -3.0 -13.9 ornithine carbamoyltransferase compare
AO353_08015 -3.0 -9.3 5,10-methylenetetrahydrofolate reductase compare
AO353_16940 -3.0 -8.4 deoxycytidine triphosphate deaminase compare
AO353_05105 -2.9 -12.6 histidinol-phosphate aminotransferase compare
AO353_15925 -2.9 -11.9 2-isopropylmalate synthase compare
AO353_14150 -2.9 -3.3 peptidylprolyl isomerase compare
AO353_14370 -2.9 -8.7 glucose-6-phosphate isomerase compare
AO353_22800 -2.8 -4.2 sulfite reductase compare
AO353_12365 -2.8 -4.3 phosphoribosyl-AMP cyclohydrolase compare
AO353_15185 -2.7 -7.1 ATPase compare
AO353_10705 -2.7 -6.4 tryptophan synthase subunit alpha compare
AO353_12460 -2.6 -9.9 malate dehydrogenase compare
AO353_13140 -2.6 -8.2 tRNA dimethylallyltransferase compare
AO353_07355 -2.5 -7.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_00825 -2.4 -5.4 porin compare
AO353_03795 -2.4 -4.8 fumarate hydratase compare
AO353_06045 -2.3 -9.3 exodeoxyribonuclease V subunit beta compare
AO353_03020 -2.3 -7.6 arginine N-succinyltransferase compare
AO353_06320 -2.2 -5.7 AsnC family transcriptional regulator compare
AO353_10730 -2.2 -2.8 hypothetical protein compare
AO353_08165 -2.2 -3.6 pyrroline-5-carboxylate reductase compare
AO353_00490 -2.2 -4.6 PasA protein compare
AO353_06040 -2.1 -5.4 exodeoxyribonuclease V subunit alpha compare
AO353_02685 -2.1 -4.6 phosphoribosylglycinamide formyltransferase compare
AO353_21625 -2.1 -3.4 Fe/S biogenesis protein NfuA compare
AO353_02720 -2.0 -6.1 cysteine synthase compare
AO353_09285 -2.0 -10.3 reactive intermediate/imine deaminase compare
AO353_12145 -1.9 -5.0 nitrogen regulation protein NR(I) compare
AO353_14400 -1.9 -5.4 Fis family transcriptional regulator compare
AO353_10430 -1.9 -4.4 chromosome partitioning protein ParB compare
AO353_16210 -1.8 -10.9 XRE family transcriptional regulator compare
AO353_12420 -1.8 -4.2 predicted FeS cluster maintenance protein (from data) compare
AO353_03605 -1.8 -1.8 FmdB family transcriptional regulator compare
AO353_15250 -1.8 -4.0 cytochrome B compare
AO353_05690 -1.8 -4.3 SsrA-binding protein compare
AO353_03615 -1.7 -4.4 cold-shock protein compare
AO353_11165 -1.7 -8.4 hypothetical protein compare
AO353_13640 -1.7 -4.7 histidine kinase compare
AO353_27650 -1.7 -4.9 cell division protein FtsK compare
AO353_00495 -1.7 -2.9 DNA topoisomerase I compare
AO353_01410 -1.6 -3.4 ribonuclease E compare
AO353_08880 -1.5 -2.9 exopolyphosphatase compare
AO353_03585 -1.5 -3.5 ATP-dependent DNA helicase RuvA compare
AO353_10455 -1.5 -2.2 tRNA modification GTPase MnmE compare
AO353_03015 -1.5 -4.6 arginine N-succinyltransferase compare
AO353_08780 -1.5 -6.6 5-formyltetrahydrofolate cyclo-ligase compare
AO353_11865 -1.5 -6.7 ATPase conserved
AO353_20175 -1.5 -3.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_05080 -1.4 -9.0 sulfate adenylyltransferase compare
AO353_19250 -1.4 -2.9 molybdenum cofactor guanylyltransferase compare
AO353_14935 -1.4 -3.8 aminopeptidase compare
AO353_21655 -1.4 -4.1 cobalamin biosynthesis protein CobW compare
AO353_05075 -1.4 -8.6 adenylylsulfate kinase compare
AO353_18715 -1.4 -1.7 histidine kinase compare
AO353_10945 -1.4 -3.2 cytochrome C compare
AO353_11770 -1.4 -2.0 molecular chaperone Hsp33 compare
AO353_14420 -1.3 -4.2 molecular chaperone DnaK compare
AO353_11750 -1.3 -2.2 ATPase compare
AO353_15725 -1.3 -3.5 hypothetical protein compare
AO353_02250 -1.3 -1.5 chorismate synthase compare
AO353_17640 -1.3 -2.8 serine peptidase compare
AO353_00515 -1.3 -3.7 hypothetical protein compare
AO353_22685 -1.3 -4.2 peroxidase compare
AO353_03590 -1.3 -3.6 crossover junction endodeoxyribonuclease RuvC compare
AO353_04175 -1.3 -4.7 glycerol uptake facilitator GlpF compare
AO353_05520 -1.2 -4.4 nicotinate-nucleotide pyrophosphorylase compare
AO353_07610 -1.2 -1.6 hypothetical protein compare
AO353_02975 -1.2 -2.7 aspartate kinase compare
AO353_02810 -1.2 -5.8 histidine kinase compare
AO353_09050 -1.2 -3.6 recombinase XerC compare
AO353_09890 -1.2 -4.8 phosphate ABC transporter ATP-binding protein compare
AO353_03580 -1.2 -2.5 ATP-dependent DNA helicase RuvB compare
AO353_14595 -1.2 -6.0 carbonate dehydratase compare
AO353_19000 -1.1 -1.6 ABC transporter compare
AO353_06050 -1.1 -5.4 exodeoxyribonuclease V subunit gamma compare
AO353_03710 -1.1 -2.6 formyltetrahydrofolate deformylase compare
AO353_06155 -1.1 -6.0 copper-transporting ATPase compare
AO353_04355 -1.1 -2.1 homoserine dehydrogenase compare
AO353_04565 -1.1 -4.8 nucleoid-associated protein compare
AO353_02060 -1.1 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_03630 -1.1 -7.9 porin compare
AO353_00865 -1.1 -6.8 phosphoenolpyruvate synthase compare
AO353_20095 -1.0 -4.1 histidine kinase compare
AO353_26195 -1.0 -2.7 hypothetical protein compare
AO353_28425 -1.0 -3.2 TetR family transcriptional regulator compare
AO353_08485 -1.0 -7.5 threonine dehydratase compare
AO353_03025 -1.0 -3.9 acetylornithine aminotransferase compare
AO353_08130 -1.0 -2.0 uracil phosphoribosyltransferase compare
AO353_20800 -1.0 -1.8 hypothetical protein compare
AO353_23495 -1.0 -2.5 SAM-dependent methyltransferase compare
AO353_18505 -1.0 -2.0 translation initiation factor 2 compare
AO353_10435 -1.0 -5.5 chromosome partitioning protein compare
AO353_00620 -1.0 -1.7 cytochrome C oxidase Cbb3 compare
AO353_12150 -1.0 -2.7 histidine kinase compare
AO353_16810 -1.0 -3.2 recombinase RecX compare
AO353_07075 -1.0 -3.9 elongation factor Tu compare
AO353_19090 -1.0 -2.1 MarR family transcriptional regulator compare
AO353_11530 -1.0 -5.1 diguanylate cyclase compare
AO353_16805 -1.0 -4.2 recombinase RecA compare
AO353_02195 -0.9 -3.3 spermidine synthase compare
AO353_07525 -0.9 -7.1 biotin synthase compare
AO353_01015 -0.9 -2.4 hypothetical protein compare
AO353_01780 -0.9 -5.9 heat-shock protein Hsp90 compare
AO353_13225 -0.9 -2.4 50S ribosomal protein L9 compare
AO353_16845 -0.9 -4.6 LysR family transcriptional regulator compare
AO353_14775 -0.9 -4.5 hypothetical protein compare
AO353_03365 -0.9 -5.6 transcriptional regulator compare
AO353_23620 -0.9 -2.0 hypothetical protein compare
AO353_11850 -0.9 -3.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_10825 -0.9 -6.7 hypothetical protein compare
AO353_27410 -0.9 -2.5 hypothetical protein compare
AO353_13080 -0.9 -4.4 thiosulfate sulfurtransferase compare
AO353_16825 -0.9 -4.1 hypothetical protein compare
AO353_13605 -0.9 -4.8 oxidoreductase compare
AO353_03670 -0.9 -3.8 ornithine acetyltransferase compare
AO353_12080 -0.9 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_20630 -0.9 -4.5 SAM-dependent methyltransferase compare
AO353_20170 -0.9 -3.3 trigger factor compare
AO353_18135 -0.9 -1.5 hypothetical protein compare
AO353_03525 -0.9 -5.3 quinolinate synthase A compare
AO353_18960 -0.9 -1.9 terminase compare
AO353_13245 -0.9 -3.6 hypothetical protein compare
AO353_13200 -0.8 -5.8 exoribonuclease R compare
AO353_12045 -0.8 -3.5 iron transporter compare
AO353_15785 -0.8 -5.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_05125 -0.8 -3.2 BolA family transcriptional regulator compare
AO353_10930 -0.8 -4.0 DNA polymerase I compare
AO353_20265 -0.8 -2.3 spore coat protein compare
AO353_09785 -0.8 -2.1 hypothetical protein compare
AO353_13100 -0.8 -1.4 GTPase RsgA compare
AO353_08115 -0.8 -3.7 energy transducer TonB compare
AO353_21615 -0.8 -5.8 methionine synthase compare
AO353_03985 -0.8 -3.5 imelysin compare
AO353_01375 -0.8 -4.4 phosphate acyltransferase compare
AO353_12930 -0.8 -2.4 GlcNAc-PI de-N-acetylase compare
AO353_21330 -0.8 -4.9 RpiR family transcriptional regulator compare
AO353_17620 -0.8 -6.4 L-aspartate oxidase compare
AO353_12765 -0.8 -1.9 transcriptional regulator compare
AO353_21455 -0.8 -1.4 cation:proton antiporter compare
AO353_21805 -0.8 -2.5 peptidylprolyl isomerase compare
AO353_06160 -0.7 -3.5 transcriptional regulator compare
AO353_00610 -0.7 -1.6 cytochrome C oxidase Cbb3 compare
AO353_20785 -0.7 -2.8 carbon storage regulator CsrA compare
AO353_19145 -0.7 -2.8 protease HtpX compare
AO353_11255 -0.7 -2.6 RND transporter compare
AO353_18890 -0.7 -2.3 cytochrome C compare
AO353_10440 -0.7 -2.5 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_06480 -0.7 -2.0 50S rRNA methyltransferase compare
AO353_04240 -0.7 -1.2 chemotaxis protein CheW compare
AO353_12345 -0.7 -1.2 twin-arginine protein translocation system subunit TatC compare
AO353_00630 -0.7 -3.2 (Fe-S)-binding protein compare
AO353_06725 -0.7 -1.4 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium Fumarate dibasic in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium Fumarate dibasic across organisms