Experiment set1IT060 for Pantoea sp. MT58

Compare to:

Cadmium acetate dihydrate 8 uM, aerobic

200 most important genes:

  gene name fitness t score description  
IAI47_17220 -5.9 -19.8 glutamate synthase large subunit compare
IAI47_16010 -5.8 -14.6 3-isopropylmalate dehydratase large subunit compare
IAI47_16015 -5.8 -5.6 3-isopropylmalate dehydratase small subunit compare
IAI47_07065 -5.8 -8.8 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_01040 -5.7 -11.0 threonine ammonia-lyase, biosynthetic compare
IAI47_00895 -5.6 -17.3 phosphoenolpyruvate carboxylase compare
IAI47_15635 -5.6 -5.1 RNA polymerase-binding protein DksA compare
IAI47_03860 -5.6 -11.3 diaminopimelate decarboxylase compare
IAI47_16205 -5.5 -8.4 threonine synthase compare
IAI47_04190 -5.5 -9.2 adenylyl-sulfate kinase compare
IAI47_17225 -5.5 -19.4 sulfite reductase subunit alpha compare
IAI47_07070 -5.5 -7.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_18015 -5.4 -13.6 homoserine O-succinyltransferase compare
IAI47_07085 -5.4 -14.0 histidinol-phosphate transaminase compare
IAI47_07090 -5.4 -11.6 histidinol dehydrogenase compare
IAI47_00905 -5.4 -14.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_16215 -5.4 -17.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_06275 -5.4 -20.3 amidophosphoribosyltransferase compare
IAI47_09180 -5.4 -8.9 anthranilate phosphoribosyltransferase compare
IAI47_05180 -5.3 -14.1 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_18040 -5.3 -17.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_16210 -5.2 -13.6 homoserine kinase compare
IAI47_09175 -5.2 -10.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_00880 -5.2 -16.7 cystathionine gamma-synthase compare
IAI47_16005 -5.2 -11.1 3-isopropylmalate dehydrogenase compare
IAI47_01050 -5.1 -18.0 ketol-acid reductoisomerase compare
IAI47_00920 -5.1 -17.6 argininosuccinate lyase compare
IAI47_01030 -5.1 -18.4 branched-chain amino acid transaminase compare
IAI47_03725 -5.0 -11.7 phosphoglycerate dehydrogenase compare
IAI47_09190 -5.0 -12.5 anthranilate synthase component 1 compare
IAI47_00600 -5.0 -14.1 orotate phosphoribosyltransferase compare
IAI47_13180 -5.0 -8.3 manganese-binding transcriptional regulator MntR compare
IAI47_00915 -5.0 -19.1 argininosuccinate synthase compare
IAI47_16350 -4.9 -11.5 phosphoserine phosphatase compare
IAI47_07060 -4.9 -13.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_03975 -4.9 -16.1 amino-acid N-acetyltransferase compare
IAI47_04150 -4.9 -16.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_12865 -4.9 -6.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_09170 -4.9 -8.8 tryptophan synthase subunit beta compare
IAI47_16120 -4.9 -14.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_13900 -4.8 -18.1 asparagine synthase B compare
IAI47_00455 -4.8 -11.2 nitrogen regulation protein NR(II) compare
IAI47_09185 -4.8 -6.6 glutamine amidotransferase compare
IAI47_09010 -4.8 -10.3 formyltetrahydrofolate deformylase compare
IAI47_01035 -4.8 -21.7 dihydroxy-acid dehydratase compare
IAI47_07075 -4.8 -10.2 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_12215 -4.8 -13.7 dihydroorotase compare
IAI47_02695 -4.7 -14.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_00900 -4.7 -17.2 acetylornithine deacetylase compare
IAI47_00910 -4.7 -13.4 acetylglutamate kinase compare
IAI47_13770 -4.6 -9.9 citrate synthase compare
IAI47_16000 -4.6 -22.6 2-isopropylmalate synthase compare
IAI47_04930 -4.6 -22.2 phosphoribosylformylglycinamidine synthase compare
IAI47_16830 -4.6 -16.8 ornithine carbamoyltransferase compare
IAI47_16115 -4.6 -23.5 carbamoyl-phosphate synthase large subunit compare
IAI47_12705 -4.5 -14.6 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_07080 -4.5 -11.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_09165 -4.5 -8.7 tryptophan synthase subunit alpha compare
IAI47_16860 -4.5 -16.7 aspartate carbamoyltransferase compare
IAI47_14350 -4.4 -8.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_00780 -4.4 -4.3 6-phosphofructokinase compare
IAI47_15120 -4.4 -5.2 glutamate 5-kinase compare
IAI47_09275 -4.4 -11.6 orotidine-5'-phosphate decarboxylase compare
IAI47_12645 -4.3 -8.3 porin OmpA compare
IAI47_18045 -4.3 -14.0 phosphoribosylamine--glycine ligase compare
IAI47_14355 -4.3 -13.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_04185 -4.3 -19.9 sulfate adenylyltransferase subunit CysN compare
IAI47_04895 -4.3 -5.9 pyridoxine 5'-phosphate synthase compare
IAI47_08085 -4.2 -8.8 helix-turn-helix domain-containing protein compare
IAI47_15115 -4.2 -9.8 glutamate-5-semialdehyde dehydrogenase compare
IAI47_04155 -4.2 -16.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_13685 -4.2 -3.3 Tol-Pal system protein TolB compare
IAI47_04160 -4.2 -16.6 phosphoadenylyl-sulfate reductase compare
IAI47_06235 -4.2 -10.0 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_16870 -4.1 -9.6 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_04180 -4.1 -15.5 sulfate adenylyltransferase subunit CysD compare
IAI47_00760 -4.1 -5.0 envelope stress response regulator transcription factor CpxR compare
IAI47_04175 -4.1 -14.2 uroporphyrinogen-III C-methyltransferase compare
IAI47_05275 -3.9 -8.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_17185 -3.9 -3.8 RNA polymerase factor sigma-54 compare
IAI47_14945 -3.9 -3.8 pyrroline-5-carboxylate reductase compare
IAI47_16080 -3.8 -11.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_10520 -3.7 -5.0 pyridoxamine 5'-phosphate oxidase compare
IAI47_07095 -3.7 -10.1 ATP phosphoribosyltransferase compare
IAI47_13695 -3.7 -1.5 colicin uptake protein TolR compare
IAI47_03855 -3.6 -9.3 LysR family transcriptional regulator compare
IAI47_15810 -3.6 -3.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_01515 -3.4 -16.9 zinc/cadmium/mercury/lead-transporting ATPase compare
IAI47_00450 -3.4 -14.8 nitrogen regulation protein NR(I) compare
IAI47_18315 -3.4 -6.6 HTH-type transcriptional regulator MetR compare
IAI47_05465 -3.3 -7.6 bile acid:sodium symporter compare
IAI47_12060 -3.3 -2.3 beta-ketoacyl-ACP synthase II compare
IAI47_04410 -3.3 -15.1 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_13745 -3.2 -4.9 2-oxoglutarate dehydrogenase E1 component compare
IAI47_07020 -3.2 -2.6 hypothetical protein compare
IAI47_09240 -3.1 -2.2 HTH-type transcriptional regulator CysB compare
IAI47_18530 -3.0 -3.0 thioredoxin TrxA compare
IAI47_17215 -3.0 -1.7 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_18240 -3.0 -2.9 NAD(P)H-flavin reductase compare
IAI47_12915 -2.9 -11.5 leucine-responsive transcriptional regulator Lrp compare
IAI47_09235 -2.9 -2.7 type I DNA topoisomerase compare
IAI47_07905 -2.8 -1.6 Arc family DNA-binding protein compare
IAI47_07165 -2.7 -3.7 exodeoxyribonuclease I compare
IAI47_04120 -2.6 -15.9 GTP diphosphokinase compare
IAI47_13740 -2.5 -2.3 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_05390 -2.5 -6.9 sulfate/thiosulfate ABC transporter permease CysT compare
IAI47_00460 -2.4 -1.7 glutamate--ammonia ligase compare
IAI47_17965 -2.4 -13.0 glucose-6-phosphate isomerase compare
IAI47_03375 -2.4 -10.3 peptide chain release factor 3 compare
IAI47_16220 -2.4 -5.0 thr operon leader peptide compare
IAI47_05400 -2.3 -8.7 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI47_05385 -2.3 -12.5 sulfate ABC transporter substrate-binding protein compare
IAI47_05420 -2.2 -2.0 PTS glucose transporter subunit IIA compare
IAI47_05395 -2.1 -10.2 sulfate/thiosulfate ABC transporter permease CysW compare
IAI47_01955 -2.1 -10.1 aspartate aminotransferase family protein compare
IAI47_17020 -2.0 -4.0 30S ribosome-binding factor RbfA compare
IAI47_00300 -1.9 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_02260 -1.9 -4.7 Zn(2+)-responsive transcriptional regulator compare
IAI47_11450 -1.8 -7.1 ankyrin repeat domain-containing protein compare
IAI47_18215 -1.8 -2.0 Trk system potassium transporter TrkH compare
IAI47_12300 -1.7 -4.1 hypothetical protein compare
IAI47_04835 -1.7 -7.6 ATP-dependent RNA helicase SrmB compare
IAI47_09360 -1.7 -1.5 peptide ABC transporter ATP-binding protein SapF compare
IAI47_05070 -1.7 -1.0 outer membrane protein assembly factor BamB compare
IAI47_15540 -1.7 -8.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_13885 -1.7 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_05440 -1.6 -7.7 cysteine synthase A compare
IAI47_03595 -1.6 -5.1 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_16095 -1.6 -4.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_11415 -1.6 -1.5 hypothetical protein compare
IAI47_10925 -1.6 -3.7 EAL domain-containing protein compare
IAI47_01045 -1.5 -5.2 HTH-type transcriptional activator IlvY compare
IAI47_01365 -1.5 -1.7 inorganic phosphate transporter PitA compare
IAI47_05155 -1.5 -10.9 polyphosphate kinase 1 compare
IAI47_02350 -1.5 -1.2 tRNA-Thr compare
IAI47_05175 -1.4 -7.2 phosphoribosylglycinamide formyltransferase compare
IAI47_21450 -1.4 -1.4 general stress protein compare
IAI47_00655 -1.4 -4.0 glycosyltransferase family 4 protein compare
IAI47_18410 -1.4 -3.5 diaminopimelate epimerase compare
IAI47_15605 -1.3 -2.0 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_13690 -1.3 -0.9 cell envelope integrity protein TolA compare
IAI47_02090 -1.3 -2.9 elongation factor Tu compare
IAI47_00110 -1.3 -5.0 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_10775 -1.3 -3.3 ribonuclease T compare
IAI47_06245 -1.3 -2.9 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_17005 -1.3 -5.4 polyribonucleotide nucleotidyltransferase compare
IAI47_04870 -1.3 -5.2 elongation factor 4 compare
IAI47_10755 -1.3 -1.9 DUF1289 domain-containing protein compare
IAI47_15660 -1.2 -4.1 pantoate--beta-alanine ligase compare
IAI47_17900 -1.2 -1.0 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_13050 -1.2 -3.0 YbjN domain-containing protein compare
IAI47_21035 -1.2 -2.4 TetR/AcrR family transcriptional regulator compare
IAI47_17000 -1.2 -7.2 lipoprotein NlpI compare
IAI47_08445 -1.2 -1.3 Holliday junction branch migration protein RuvA compare
IAI47_13635 -1.2 -6.0 quinolinate synthase NadA compare
IAI47_21655 -1.2 -1.0 LacI family DNA-binding transcriptional regulator compare
IAI47_00465 -1.2 -2.2 ribosome-dependent GTPase TypA compare
IAI47_10840 -1.1 -3.5 pyruvate kinase PykF compare
IAI47_15655 -1.1 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
IAI47_03685 -1.1 -6.1 erythrose-4-phosphate dehydrogenase compare
IAI47_08845 -1.1 -1.6 cell division topological specificity factor MinE compare
IAI47_00870 -1.1 -0.8 50S ribosomal protein L31 compare
IAI47_00875 -1.1 -1.3 met regulon transcriptional regulator MetJ compare
IAI47_20600 -1.1 -2.1 hypothetical protein compare
IAI47_06370 -1.1 -3.6 NADH-quinone oxidoreductase subunit C/D compare
IAI47_08035 -1.1 -1.5 flagellar hook-basal body complex protein FliE compare
IAI47_02585 -1.1 -2.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_18055 -1.1 -3.5 DNA-binding protein HU-alpha compare
IAI47_09395 -1.1 -3.3 phage shock protein PspA compare
IAI47_03680 -1.1 -6.1 transketolase compare
IAI47_10835 -1.0 -1.0 tRNA-Val compare
IAI47_15155 -1.0 -2.8 DUF943 family protein compare
IAI47_10825 -1.0 -1.5 tRNA-Val compare
IAI47_01475 -1.0 -5.2 MurR/RpiR family transcriptional regulator compare
IAI47_09210 -1.0 -4.1 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_17035 -1.0 -2.0 ribosome maturation factor RimP compare
IAI47_06270 -1.0 -4.5 colicin V production protein compare
IAI47_20850 -1.0 -2.7 TetR/AcrR family transcriptional regulator compare
IAI47_10890 -1.0 -7.5 FAD-binding oxidoreductase compare
IAI47_12920 -0.9 -2.5 thioredoxin-disulfide reductase compare
IAI47_18715 -0.9 -1.2 YibL family ribosome-associated protein compare
IAI47_13750 -0.9 -2.4 succinate dehydrogenase iron-sulfur subunit compare
IAI47_21880 -0.9 -0.8 ParA family protein compare
IAI47_04505 -0.9 -4.8 transcriptional repressor MprA compare
IAI47_20760 -0.9 -4.8 DUF1852 domain-containing protein compare
IAI47_09040 -0.9 -1.2 NAD-dependent epimerase compare
IAI47_16085 -0.9 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_11760 -0.9 -1.2 TonB-dependent siderophore receptor compare
IAI47_18985 -0.9 -2.3 MarR family transcriptional regulator compare
IAI47_06565 -0.9 -1.4 YejL family protein compare
IAI47_05745 -0.9 -1.5 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_19245 -0.8 -2.1 SIS domain-containing protein compare
IAI47_18400 -0.8 -1.6 tyrosine recombinase XerC compare
IAI47_19890 -0.8 -2.1 hypothetical protein compare
IAI47_05305 -0.8 -2.4 ArsC family reductase compare
IAI47_12085 -0.8 -3.4 phosphate acyltransferase PlsX compare
IAI47_09305 -0.8 -1.7 cyclic di-GMP phosphodiesterase compare
IAI47_18520 -0.8 -7.0 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_13765 -0.8 -1.7 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_13755 -0.8 -3.9 succinate dehydrogenase flavoprotein subunit compare


Specific Phenotypes

For 2 genes in this experiment

For stress Cadmium acetate dihydrate in Pantoea sp. MT58

For stress Cadmium acetate dihydrate across organisms