Experiment set1IT059 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Potassium acetate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_02550 -3.9 -4.6 TetR family transcriptional regulator compare
AO353_27735 -3.9 -5.9 isocitrate lyase compare
AO353_16835 -3.8 -2.2 LuxR family transcriptional regulator compare
AO353_14380 -3.8 -3.7 pantoate--beta-alanine ligase compare
AO353_13070 -3.7 -5.1 phosphoserine phosphatase compare
AO353_12365 -3.6 -2.5 phosphoribosyl-AMP cyclohydrolase compare
AO353_20620 -3.6 -6.4 isopropylmalate isomerase compare
AO353_20540 -3.5 -7.0 aromatic amino acid aminotransferase compare
AO353_02040 -3.4 -2.8 integration host factor subunit beta compare
AO353_16195 -3.4 -2.0 DNA mismatch repair protein MutT compare
AO353_13165 -3.4 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20665 -3.4 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07230 -3.4 -14.3 anthranilate synthase compare
AO353_07560 -3.3 -10.4 malate synthase G compare
AO353_12090 -3.3 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_00430 -3.3 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_20635 -3.2 -12.0 3-isopropylmalate dehydrogenase compare
AO353_20625 -3.2 -3.1 3-isopropylmalate dehydratase compare
AO353_12515 -3.2 -18.3 glutamate synthase compare
AO353_05115 -3.2 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20865 -3.2 -2.1 cold-shock protein compare
AO353_05625 -3.1 -1.6 transcription elongation factor GreA compare
AO353_05110 -3.1 -9.0 histidinol dehydrogenase compare
AO353_12070 -3.1 -7.8 imidazoleglycerol-phosphate dehydratase compare
AO353_20695 -3.1 -5.2 O-succinylhomoserine sulfhydrylase compare
AO353_02075 -3.1 -9.2 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_24340 -3.1 -1.6 TetR family transcriptional regulator compare
AO353_08170 -3.1 -4.7 hypothetical protein compare
AO353_10730 -3.0 -1.7 hypothetical protein compare
AO353_09890 -3.0 -4.1 phosphate ABC transporter ATP-binding protein compare
AO353_14505 -3.0 -10.0 ketol-acid reductoisomerase compare
AO353_07220 -3.0 -7.5 anthranilate synthase compare
AO353_10815 -3.0 -8.6 carbonate dehydratase conserved
AO353_08685 -3.0 -7.1 N-acetylglutamate synthase compare
AO353_08180 -3.0 -11.0 homoserine O-acetyltransferase compare
AO353_12520 -2.9 -10.5 glutamate synthase compare
AO353_12085 -2.9 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_02710 -2.9 -10.0 (p)ppGpp synthetase compare
AO353_08470 -2.9 -4.8 RNA pyrophosphohydrolase compare
AO353_16310 -2.9 -8.6 phosphoenolpyruvate carboxylase compare
AO353_06390 -2.8 -5.8 magnesium transporter compare
AO353_14940 -2.8 -3.4 malate:quinone oxidoreductase compare
AO353_02975 -2.8 -3.6 aspartate kinase compare
AO353_09860 -2.8 -10.9 histidine kinase compare
AO353_08475 -2.8 -8.7 phosphoserine phosphatase compare
AO353_07210 -2.8 -5.6 indole-3-glycerol-phosphate synthase compare
AO353_23610 -2.8 -7.3 serine/threonine protein phosphatase conserved
AO353_11075 -2.7 -15.5 acetyl-CoA hydrolase conserved
AO353_14495 -2.7 -9.6 acetolactate synthase 3 catalytic subunit compare
AO353_10035 -2.7 -8.0 LysR family transcriptional regulator compare
AO353_03670 -2.7 -5.4 ornithine acetyltransferase compare
AO353_12075 -2.7 -7.3 imidazole glycerol phosphate synthase subunit HisH compare
AO353_09000 -2.7 -4.8 argininosuccinate lyase compare
AO353_09240 -2.6 -3.1 acetylglutamate kinase compare
AO353_05075 -2.6 -9.7 adenylylsulfate kinase compare
AO353_04825 -2.6 -6.6 hypothetical protein compare
AO353_01685 -2.6 -2.1 hypothetical protein compare
AO353_08185 -2.6 -8.7 methionine biosynthesis protein MetW compare
AO353_12245 -2.5 -4.1 hypothetical protein compare
AO353_08345 -2.5 -8.9 dihydroxy-acid dehydratase compare
AO353_13100 -2.5 -1.5 GTPase RsgA compare
AO353_00310 -2.5 -9.3 transaldolase compare
AO353_04155 -2.5 -10.2 ornithine carbamoyltransferase compare
AO353_06455 -2.5 -2.9 D-alanyl-D-alanine carboxypeptidase compare
AO353_09885 -2.5 -2.6 transcriptional regulator PhoU compare
AO353_03585 -2.5 -3.2 ATP-dependent DNA helicase RuvA compare
AO353_02070 -2.5 -6.6 prephenate dehydratase compare
AO353_10030 -2.5 -9.3 pyruvate carboxylase subunit A compare
AO353_17625 -2.5 -8.5 RNA polymerase subunit sigma compare
AO353_07075 -2.5 -5.2 elongation factor Tu compare
AO353_14220 -2.5 -1.7 ribosomal large subunit pseudouridine synthase D compare
AO353_12115 -2.5 -2.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_04830 -2.5 -5.1 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_08510 -2.5 -4.4 3-phosphoglycerate dehydrogenase compare
AO353_20200 -2.5 -3.7 peptidylprolyl isomerase compare
AO353_07475 -2.5 -8.0 sulfurase compare
AO353_14150 -2.5 -1.7 peptidylprolyl isomerase compare
AO353_08885 -2.4 -14.7 polyphosphate kinase compare
AO353_10705 -2.4 -4.3 tryptophan synthase subunit alpha compare
AO353_22800 -2.4 -3.4 sulfite reductase compare
AO353_24120 -2.4 -2.2 hypothetical protein compare
AO353_02765 -2.4 -3.9 NAD(P)H-quinone oxidoreductase compare
AO353_28425 -2.4 -4.0 TetR family transcriptional regulator compare
AO353_08015 -2.4 -5.1 5,10-methylenetetrahydrofolate reductase compare
AO353_26045 -2.4 -1.9 hypothetical protein compare
AO353_19060 -2.4 -4.3 CysB family transcriptional regulator compare
AO353_00750 -2.4 -4.3 GntR family transcriptional regulator compare
AO353_10025 -2.4 -12.4 pyruvate carboxylase subunit B compare
AO353_10670 -2.4 -7.0 shikimate dehydrogenase compare
AO353_16530 -2.4 -1.4 ribonuclease HII compare
AO353_12500 -2.3 -1.6 shikimate kinase compare
AO353_14370 -2.3 -5.6 glucose-6-phosphate isomerase compare
AO353_11340 -2.3 -1.6 MarR family transcriptional regulator compare
AO353_09865 -2.3 -9.9 hypothetical protein compare
AO353_08590 -2.3 -9.6 glutamine synthetase compare
AO353_19360 -2.3 -2.6 peroxiredoxin compare
AO353_28035 -2.3 -6.2 hypothetical protein compare
AO353_09905 -2.3 -8.8 phosphate-binding protein compare
AO353_07215 -2.3 -7.2 anthranilate phosphoribosyltransferase compare
AO353_12360 -2.3 -7.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_15925 -2.3 -11.1 2-isopropylmalate synthase compare
AO353_20185 -2.3 -5.7 DNA-binding protein compare
AO353_06550 -2.3 -7.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase conserved
AO353_03795 -2.3 -4.3 fumarate hydratase compare
AO353_10440 -2.3 -5.6 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_06365 -2.3 -10.3 hypothetical protein compare
AO353_10320 -2.3 -2.3 hypothetical protein compare
AO353_22810 -2.3 -1.0 hypothetical protein compare
AO353_07480 -2.2 -8.3 LysR family transcriptional regulator compare
AO353_23785 -2.2 -1.6 hypothetical protein compare
AO353_07315 -2.2 -2.1 rRNA methyltransferase compare
AO353_21445 -2.2 -3.6 cation:proton antiporter compare
AO353_14500 -2.2 -6.1 acetolactate synthase 3 regulatory subunit compare
AO353_14115 -2.2 -5.0 gamma-glutamyl kinase compare
AO353_10455 -2.2 -1.5 tRNA modification GTPase MnmE compare
AO353_26835 -2.2 -2.9 transcriptional regulator compare
AO353_06040 -2.2 -3.3 exodeoxyribonuclease V subunit alpha compare
AO353_13640 -2.2 -4.5 histidine kinase compare
AO353_14385 -2.1 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO353_02555 -2.1 -6.8 histidine kinase compare
AO353_27215 -2.1 -2.6 hypothetical protein compare
AO353_04840 -2.1 -9.1 RND transporter compare
AO353_14775 -2.1 -6.1 hypothetical protein compare
AO353_22700 -2.1 -2.2 LexA family transcriptional regulator compare
AO353_08595 -2.1 -8.2 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
AO353_07155 -2.1 -6.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_08780 -2.1 -6.8 5-formyltetrahydrofolate cyclo-ligase compare
AO353_27665 -2.1 -8.1 arginyl-tRNA-protein transferase compare
AO353_11915 -2.1 -7.1 agmatine deiminase compare
AO353_06720 -2.1 -2.2 NrdR family transcriptional regulator compare
AO353_11850 -2.0 -3.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_15785 -2.0 -7.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_24130 -2.0 -2.5 hypothetical protein compare
AO353_01375 -2.0 -7.1 phosphate acyltransferase compare
AO353_06775 -2.0 -6.0 dTDP-4-dehydrorhamnose reductase compare
AO353_04835 -2.0 -10.1 fusaric acid resistance protein compare
AO353_03020 -2.0 -7.1 arginine N-succinyltransferase compare
AO353_11775 -2.0 -5.4 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_02005 -2.0 -1.4 hypothetical protein compare
AO353_05695 -2.0 -10.7 transcriptional regulator PdhR compare
AO353_09040 -2.0 -1.6 diaminopimelate epimerase compare
AO353_07515 -2.0 -1.6 transporter compare
AO353_27000 -2.0 -2.1 hypothetical protein compare
AO353_13720 -2.0 -10.4 arginine decarboxylase compare
AO353_12105 -1.9 -5.9 peptidase S41 compare
AO353_27585 -1.9 -2.2 DNA repair protein compare
AO353_04035 -1.9 -3.5 exclusion suppressor FxsA compare
AO353_11945 -1.9 -1.0 4-oxalocrotonate tautomerase compare
AO353_11770 -1.9 -1.3 molecular chaperone Hsp33 compare
AO353_05690 -1.9 -3.4 SsrA-binding protein compare
AO353_12665 -1.9 -1.8 glycosyl transferase compare
AO353_08465 -1.9 -9.2 phosphoenolpyruvate-protein phosphotransferase compare
AO353_14595 -1.9 -8.3 carbonate dehydratase compare
AO353_05080 -1.9 -8.2 sulfate adenylyltransferase compare
AO353_02940 -1.9 -2.3 DNA-binding protein compare
AO353_20495 -1.8 -1.6 NUDIX hydrolase compare
AO353_04175 -1.8 -3.9 glycerol uptake facilitator GlpF compare
AO353_14030 -1.8 -8.9 ABC transporter ATP-binding protein compare
AO353_28110 -1.8 -5.3 TetR family transcriptional regulator compare
AO353_09900 -1.8 -8.7 phosphate ABC transporter permease compare
AO353_09440 -1.8 -1.3 type VI secretion protein compare
AO353_00955 -1.8 -2.5 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_06355 -1.8 -2.9 thiamine-phosphate pyrophosphorylase compare
AO353_03580 -1.8 -3.1 ATP-dependent DNA helicase RuvB compare
AO353_20345 -1.7 -6.6 methylcrotonoyl-CoA carboxylase compare
AO353_18560 -1.7 -1.4 class I peptide chain release factor compare
AO353_07470 -1.7 -8.6 acetylornithine aminotransferase conserved
AO353_18715 -1.7 -1.1 histidine kinase compare
AO353_06480 -1.7 -2.6 50S rRNA methyltransferase compare
AO353_00460 -1.7 -3.0 TetR family transcriptional regulator compare
AO353_16495 -1.7 -5.2 zinc metallopeptidase RseP compare
AO353_20340 -1.7 -3.4 gamma-carboxygeranoyl-CoA hydratase compare
AO353_09895 -1.7 -6.8 phosphate ABC transporter permease compare
AO353_08165 -1.7 -2.0 pyrroline-5-carboxylate reductase compare
AO353_20800 -1.7 -1.2 hypothetical protein compare
AO353_11165 -1.7 -7.9 hypothetical protein compare
AO353_25580 -1.7 -5.0 LysR family transcriptional regulator compare
AO353_10945 -1.6 -2.7 cytochrome C compare
AO353_15185 -1.6 -4.4 ATPase compare
AO353_25015 -1.6 -2.9 polyketide cyclase compare
AO353_13140 -1.6 -5.2 tRNA dimethylallyltransferase compare
AO353_24830 -1.6 -2.9 enoyl-CoA hydratase compare
AO353_20510 -1.6 -1.6 amidase compare
AO353_11730 -1.6 -7.7 glutamate--cysteine ligase compare
AO353_08505 -1.6 -8.7 FAD-linked oxidase compare
AO353_04105 -1.6 -4.8 argininosuccinate synthase compare
AO353_07525 -1.6 -10.4 biotin synthase compare
AO353_10065 -1.6 -6.7 hypothetical protein compare
AO353_21905 -1.6 -2.3 hypothetical protein compare
AO353_00975 -1.6 -2.9 hypothetical protein compare
AO353_02300 -1.6 -2.3 MarR family transcriptional regulator compare
AO353_26845 -1.6 -6.6 acriflavine resistance protein B compare
AO353_13685 -1.6 -3.0 3-dehydroquinate dehydratase compare
AO353_01780 -1.6 -7.1 heat-shock protein Hsp90 compare
AO353_10710 -1.6 -3.2 tryptophan synthase subunit beta compare
AO353_06050 -1.6 -5.4 exodeoxyribonuclease V subunit gamma compare
AO353_08045 -1.6 -10.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_26640 -1.6 -5.9 2-oxoisovalerate dehydrogenase compare
AO353_26465 -1.5 -3.5 hypothetical protein compare
AO353_23315 -1.5 -2.4 hypothetical protein compare


Specific Phenotypes

For 29 genes in this experiment

For carbon source Potassium acetate in Pseudomonas fluorescens FW300-N2E3

For carbon source Potassium acetate across organisms