Experiment set1IT059 for Rahnella sp. WP5

Compare to:

L-Glutamine nitrogen source; RCH2 media; shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS15005 -5.9 -13.9 dihydroxy-acid dehydratase compare
EX31_RS14215 -5.8 -17.4 cystathionine gamma-synthase compare
EX31_RS22625 -5.6 -3.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS14205 -5.6 -12.6 methylenetetrahydrofolate reductase compare
EX31_RS13275 -5.6 -12.0 diaminopimelate decarboxylase compare
EX31_RS25370 -5.5 -12.9 HTH-type transcriptional regulator MetR compare
EX31_RS04035 -5.5 -11.8 phosphoserine phosphatase compare
EX31_RS04390 -5.5 -3.8 DNA polymerase III subunit chi compare
EX31_RS03695 -5.4 -6.4 3-isopropylmalate dehydratase small subunit compare
EX31_RS03685 -5.3 -13.7 3-isopropylmalate dehydrogenase compare
EX31_RS02530 -5.3 -5.1 ABC transporter ATP-binding protein compare
EX31_RS15020 -5.3 -18.1 ketol-acid reductoisomerase compare
EX31_RS11735 -5.2 -7.2 homoserine O-succinyltransferase compare
EX31_RS14180 -5.1 -15.5 argininosuccinate lyase compare
EX31_RS23245 -5.1 -17.7 asparagine synthase B compare
EX31_RS13445 -5.1 -15.9 argininosuccinate synthase compare
EX31_RS11460 -5.0 -3.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS16860 -5.0 -20.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS11470 -5.0 -3.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS03940 -5.0 -12.5 homoserine kinase compare
EX31_RS12400 -5.0 -6.9 RNA polymerase factor sigma-54 compare
EX31_RS20495 -5.0 -9.0 outer membrane protein assembly factor BamB compare
EX31_RS20975 -5.0 -7.6 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS03690 -4.9 -12.0 3-isopropylmalate dehydratase large subunit compare
EX31_RS11440 -4.9 -5.8 histidinol dehydrogenase compare
EX31_RS03835 -4.9 -9.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS03830 -4.8 -18.5 carbamoyl-phosphate synthase large subunit compare
EX31_RS22695 -4.8 -9.7 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS20980 -4.8 -7.3 glutamate 5-kinase compare
EX31_RS03935 -4.7 -12.2 threonine synthase compare
EX31_RS21470 -4.7 -10.6 phosphoglycerate dehydrogenase compare
EX31_RS19570 -4.7 -13.6 amidophosphoribosyltransferase compare
EX31_RS05785 -4.7 -4.5 superoxide dismutase [Mn] compare
EX31_RS12825 -4.6 -8.8 ornithine carbamoyltransferase compare
EX31_RS12510 -4.6 -18.4 FAD-dependent oxidoreductase compare
EX31_RS03945 -4.6 -25.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS09970 -4.6 -6.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS09975 -4.6 -6.9 tryptophan synthase subunit beta compare
EX31_RS07955 -4.5 -22.9 GTP diphosphokinase compare
EX31_RS02690 -4.5 -6.9 pyrroline-5-carboxylate reductase compare
EX31_RS13160 -4.5 -14.3 amino-acid N-acetyltransferase compare
EX31_RS16855 -4.5 -16.0 phosphoribosylamine--glycine ligase compare
EX31_RS14190 -4.4 -12.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS14185 -4.4 -9.9 acetylglutamate kinase compare
EX31_RS21895 -4.4 -20.1 phosphoribosylformylglycinamidine synthase compare
EX31_RS09965 -4.4 -6.7 anthranilate phosphoribosyltransferase compare
EX31_RS03680 -4.3 -15.3 2-isopropylmalate synthase compare
EX31_RS20450 -4.3 -5.9 IMP dehydrogenase compare
EX31_RS11455 -4.3 -5.1 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS02520 -4.3 -5.1 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS07585 -4.3 -10.3 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS08745 -4.3 -2.9 50S ribosomal protein L9 compare
EX31_RS11445 -4.2 -7.6 histidinol-phosphate transaminase compare
EX31_RS03775 -4.2 -5.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS11465 -4.2 -7.4 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS07895 -4.1 -11.9 phosphoadenylyl-sulfate reductase compare
EX31_RS18095 -4.1 -5.6 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS22620 -4.1 -6.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS09980 -4.1 -6.8 tryptophan synthase subunit alpha compare
EX31_RS20175 -4.0 -10.7 cysteine synthase A compare
EX31_RS09955 -4.0 -7.6 anthranilate synthase component 1 compare
EX31_RS03250 -4.0 -11.0 RNA polymerase-binding protein DksA compare
EX31_RS22250 -4.0 -5.4 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS11450 -3.9 -7.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS12515 -3.9 -27.9 glutamate synthase large subunit compare
EX31_RS25365 -3.9 -2.7 50S ribosomal protein L31 compare
EX31_RS22750 -3.8 -6.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS24385 -3.8 -4.5 dihydroorotase compare
EX31_RS09855 -3.8 -5.2 orotidine-5'-phosphate decarboxylase compare
EX31_RS09890 -3.8 -12.5 HTH-type transcriptional regulator CysB compare
EX31_RS14500 -3.7 -10.5 orotate phosphoribosyltransferase compare
EX31_RS07870 -3.7 -9.7 adenylyl-sulfate kinase compare
EX31_RS23440 -3.7 -2.5 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS18540 -3.7 -4.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS12785 -3.6 -14.8 aspartate carbamoyltransferase compare
EX31_RS14310 -3.6 -4.9 6-phosphofructokinase compare
EX31_RS18255 -3.5 -3.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS18530 -3.5 -16.1 leucine-responsive transcriptional regulator Lrp compare
EX31_RS02515 -3.5 -7.0 PAS domain-containing protein compare
EX31_RS09960 -3.4 -5.7 glutamine amidotransferase compare
EX31_RS19610 -3.4 -8.5 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS22245 -3.4 -4.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS15155 -3.3 -3.2 diaminopimelate epimerase compare
EX31_RS23490 -3.3 -3.8 cell envelope integrity protein TolA compare
EX31_RS08720 -3.2 -14.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS07900 -3.1 -16.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS21850 -3.1 -3.0 pyridoxine 5'-phosphate synthase compare
EX31_RS14340 -3.1 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS07590 -3.0 -2.9 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS14335 -3.0 -2.0 serine O-acetyltransferase compare
EX31_RS07560 -3.0 -19.6 ATP-dependent chaperone ClpB compare
EX31_RS18525 -2.9 -4.4 DNA translocase FtsK compare
EX31_RS07905 -2.9 -16.5 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS20735 -2.9 -5.8 exodeoxyribonuclease V subunit beta compare
EX31_RS07880 -2.9 -17.2 sulfate adenylyltransferase subunit CysD compare
EX31_RS23495 -2.8 -8.7 Tol-Pal system protein TolB compare
EX31_RS15010 -2.8 -11.9 threonine ammonia-lyase, biosynthetic compare
EX31_RS11675 -2.8 -3.5 Holliday junction branch migration protein RuvA compare
EX31_RS11110 -2.7 -2.2 RidA family protein compare
EX31_RS06060 -2.7 -4.8 phosphate ABC transporter permease PstA compare
EX31_RS06055 -2.6 -4.3 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS07875 -2.5 -15.7 sulfate adenylyltransferase subunit CysN compare
EX31_RS23485 -2.5 -2.9 colicin uptake protein TolR compare
EX31_RS23500 -2.4 -5.5 peptidoglycan-associated lipoprotein Pal compare
EX31_RS04710 -2.4 -4.7 adenine-specific DNA-methyltransferase compare
EX31_RS06150 -2.3 -13.9 transcriptional regulator AsnC compare
EX31_RS06065 -2.3 -7.3 phosphate ABC transporter permease PstC compare
EX31_RS23480 -2.2 -4.7 Tol-Pal system protein TolQ compare
EX31_RS06070 -2.1 -8.6 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS01280 -2.1 -2.2 SgcJ/EcaC family oxidoreductase compare
EX31_RS07595 -2.1 -6.8 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS04630 -2.0 -10.8 aspartate aminotransferase family protein compare
EX31_RS25340 -2.0 -5.5 hypothetical protein compare
EX31_RS21400 -2.0 -6.2 transketolase compare
EX31_RS11435 -2.0 -5.6 ATP phosphoribosyltransferase compare
EX31_RS03480 -2.0 -4.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS04725 -2.0 -4.5 shikimate kinase AroK compare
EX31_RS18450 -1.9 -2.3 hypothetical protein compare
EX31_RS15875 -1.9 -10.4 nitrogen regulation protein NR(II) compare
EX31_RS15870 -1.9 -5.0 glutamate--ammonia ligase compare
EX31_RS06140 -1.9 -11.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS15880 -1.8 -8.0 nitrogen regulation protein NR(I) compare
EX31_RS19600 -1.8 -6.7 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS10490 -1.8 -2.0 putative selenium delivery protein YdfZ compare
EX31_RS02720 -1.7 -9.0 glutaminase B conserved
EX31_RS06000 -1.7 -5.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS24325 -1.7 -3.8 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS17285 -1.7 -4.3 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS12875 -1.6 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS14200 -1.6 -9.4 phosphoenolpyruvate carboxylase compare
EX31_RS07340 -1.6 -1.3 stress-induced protein YchH compare
EX31_RS22690 -1.6 -7.1 phosphoribosylglycinamide formyltransferase compare
EX31_RS11540 -1.6 -4.3 dCTP deaminase compare
EX31_RS21805 -1.6 -2.7 anti-sigma-E factor RseA compare
EX31_RS07415 -1.5 -1.5 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS12175 -1.5 -3.4 DNA-binding transcriptional regulator Fis compare
EX31_RS24065 -1.5 -2.1 pyrimidine utilization flavin reductase protein F compare
EX31_RS26075 -1.5 -1.5 hypothetical protein compare
EX31_RS03860 -1.4 -3.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
EX31_RS11690 -1.4 -2.6 dihydroneopterin triphosphate diphosphatase compare
EX31_RS19480 -1.4 -6.3 acetate kinase compare
EX31_RS07135 -1.4 -1.8 hypothetical protein compare
EX31_RS03570 -1.4 -2.1 DUF721 domain-containing protein compare
EX31_RS07885 -1.4 -8.7 uroporphyrinogen-III C-methyltransferase compare
EX31_RS11525 -1.4 -2.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS11760 -1.4 -11.9 methionine synthase compare
EX31_RS03790 -1.4 -2.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS20220 -1.3 -5.1 sulfate/thiosulfate ABC transporter permease CysT compare
EX31_RS21190 -1.3 -3.2 ribonuclease HI compare
EX31_RS15000 -1.3 -7.9 branched-chain amino acid transaminase compare
EX31_RS06620 -1.3 -3.4 electron transport complex subunit RsxA compare
EX31_RS00920 -1.3 -2.1 DUF1493 family protein compare
EX31_RS11815 -1.3 -7.5 glucose-6-phosphate isomerase compare
EX31_RS20210 -1.3 -5.7 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
EX31_RS02080 -1.3 -3.1 FadR family transcriptional regulator compare
EX31_RS22740 -1.3 -6.5 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS24625 -1.3 -1.3 DUF2766 domain-containing protein compare
EX31_RS10830 -1.3 -2.7 copper-binding protein compare
EX31_RS20530 -1.3 -5.6 nucleoside-diphosphate kinase compare
EX31_RS16845 -1.3 -2.6 DNA-binding protein HU-alpha compare
EX31_RS03770 -1.3 -7.6 peptidylprolyl isomerase SurA compare
EX31_RS14135 -1.2 -11.6 TonB-dependent vitamin B12 receptor BtuB compare
EX31_RS20215 -1.2 -7.1 sulfate/thiosulfate ABC transporter permease CysW compare
EX31_RS00170 -1.2 -2.1 DUF1471 domain-containing protein compare
EX31_RS08650 -1.2 -3.0 transcriptional regulator ArgR compare
EX31_RS26040 -1.2 -1.3 hypothetical protein compare
EX31_RS15015 -1.2 -3.6 HTH-type transcriptional activator IlvY compare
EX31_RS23425 -1.2 -4.4 succinate dehydrogenase membrane anchor subunit compare
EX31_RS14575 -1.2 -4.8 NAD(P)H-flavin reductase compare
EX31_RS21300 -1.2 -2.0 acyl carrier protein compare
EX31_RS14620 -1.2 -2.1 SCP2 domain-containing protein compare
EX31_RS09470 -1.2 -2.9 flagella biosynthesis regulatory protein FliT compare
EX31_RS07355 -1.2 -2.9 protease modulator HflK compare
EX31_RS07115 -1.2 -2.1 cysteine dioxygenase compare
EX31_RS04645 -1.2 -1.0 DUF2559 family protein compare
EX31_RS08535 -1.2 -2.6 30S ribosome-binding factor RbfA compare
EX31_RS08145 -1.2 -8.9 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
EX31_RS23125 -1.2 -2.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS13280 -1.2 -7.1 LysR family transcriptional regulator compare
EX31_RS22430 -1.1 -1.8 hemolysin expression modulator Hha compare
EX31_RS13875 -1.1 -5.0 major outer membrane lipoprotein compare
EX31_RS01485 -1.1 -2.4 helix-turn-helix domain-containing protein compare
EX31_RS24375 -1.1 -2.3 biofilm formation regulator BssS compare
EX31_RS10035 -1.1 -1.2 cardiolipin synthase compare
EX31_RS10515 -1.1 -3.6 disulfide bond formation protein DsbB compare
EX31_RS12500 -1.1 -6.3 stringent starvation protein A compare
EX31_RS10025 -1.1 -2.4 hypothetical protein compare
EX31_RS19575 -1.1 -6.5 colicin V production protein compare
EX31_RS17005 -1.1 -1.7 carbohydrate ABC transporter permease compare
EX31_RS23420 -1.0 -2.5 succinate dehydrogenase cytochrome b556 subunit compare
EX31_RS19485 -1.0 -4.5 phosphate acetyltransferase compare
EX31_RS02525 -1.0 -4.4 ABC transporter permease compare
EX31_RS25375 -1.0 -1.7 ilv operon leader peptide compare
EX31_RS24395 -1.0 -3.2 ribonuclease E compare
EX31_RS24300 -1.0 -1.6 DUF2971 domain-containing protein compare
EX31_RS02385 -1.0 -1.3 hypothetical protein compare
EX31_RS08140 -1.0 -2.0 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS03920 -1.0 -5.5 transaldolase compare
EX31_RS18040 -1.0 -6.8 porin OmpA compare
EX31_RS04105 -1.0 -1.6 helix-turn-helix domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Glutamine in Rahnella sp. WP5

For nitrogen source L-Glutamine across organisms