Experiment set1IT059 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 20 generations

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS08275 +1.9 15.3 hypothetical protein compare
MMP_RS06435 +1.2 7.7 CBS domain-containing protein compare
MMP_RS07650 +1.1 9.2 TldD/PmbA family protein compare
MMP_RS07835 +1.0 6.3 TldD/PmbA family protein compare
MMP_RS03675 +1.0 8.4 RimK family alpha-L-glutamate ligase compare
MMP_RS06725 +1.0 7.1 hypothetical protein compare
MMP_RS03420 +0.9 3.6 acetolactate synthase small subunit compare
MMP_RS08775 +0.9 5.7 methanogenesis marker 9 domain-containing protein compare
MMP_RS01775 +0.8 2.8 TIGR00297 family protein compare
MMP_RS07765 +0.8 5.8 sodium:alanine symporter family protein compare
MMP_RS00655 +0.8 4.2 hypothetical protein compare
MMP_RS07645 +0.8 3.2 aldehyde dehydrogenase family protein compare
MMP_RS08665 +0.8 7.1 hypothetical protein compare
MMP_RS03670 +0.8 2.9 DUF1890 domain-containing protein compare
MMP_RS08845 +0.8 6.6 archaellum operon transcriptional activator EarA family protein compare
MMP_RS08850 +0.7 6.4 hypothetical protein compare
MMP_RS08640 +0.7 5.0 TIM barrel protein compare
MMP_RS00240 +0.7 6.0 type II secretion system F family protein compare
MMP_RS07550 +0.7 5.0 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS09025 +0.7 1.4 hypothetical protein compare
MMP_RS00245 +0.7 5.9 type II secretion system F family protein compare
MMP_RS06590 +0.7 1.5 GNAT family N-acetyltransferase compare
MMP_RS09050 +0.7 2.9 CAP domain-containing protein compare
MMP_RS07345 +0.6 2.8 glycine synthesis protein GlyXL (from data) compare
MMP_RS07910 +0.6 3.9 NAD(P)H-hydrate dehydratase compare
MMP_RS08750 +0.6 2.3 hypothetical protein compare
MMP_RS08835 +0.6 2.9 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS06015 +0.6 3.7 flavodoxin family protein compare
MMP_RS07915 +0.6 3.5 DUF4870 domain-containing protein compare
MMP_RS08480 +0.6 4.1 molybdate ABC transporter substrate-binding protein compare
MMP_RS08175 +0.6 4.8 7-cyano-7-deazaguanine synthase compare
MMP_RS07890 +0.6 1.5 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS08855 +0.6 3.9 hypothetical protein compare
MMP_RS06325 +0.6 2.8 hypothetical protein compare
MMP_RS08620 +0.5 3.0 flagellar accessory protein FlaH compare
MMP_RS08390 +0.5 3.3 DUF5400 domain-containing protein compare
MMP_RS08755 +0.5 4.5 sodium:solute symporter family protein compare
MMP_RS01785 +0.5 3.6 hypothetical protein compare
MMP_RS00660 +0.5 4.4 alkaline phosphatase family protein compare
MMP_RS07715 +0.5 3.8 YfcE family phosphodiesterase compare
MMP_RS08700 +0.5 3.4 hypothetical protein compare
MMP_RS07115 +0.5 3.6 MBL fold metallo-hydrolase compare
MMP_RS06585 +0.5 1.4 DMT family protein compare
MMP_RS08940 +0.5 1.2 MetS family NSS transporter small subunit compare
MMP_RS08385 +0.5 3.7 ABC transporter substrate-binding protein compare
MMP_RS08395 +0.5 3.0 DsrE family protein compare
MMP_RS07570 +0.5 4.3 nucleotidyltransferase family protein compare
MMP_RS08405 +0.5 4.0 MFS transporter compare
MMP_RS07530 +0.5 3.9 4Fe-4S binding protein compare
MMP_RS09055 +0.5 1.0 CAP domain-containing protein compare
MMP_RS08325 +0.5 4.1 hypothetical protein compare
MMP_RS08250 +0.5 3.4 pyruvate kinase compare
MMP_RS08980 +0.5 3.3 hypothetical protein compare
MMP_RS07855 +0.5 3.4 class I SAM-dependent methyltransferase compare
MMP_RS06445 +0.5 2.8 DUF89 domain-containing protein compare
MMP_RS08470 +0.5 3.0 ATP-binding cassette domain-containing protein compare
MMP_RS03895 +0.5 2.2 hypothetical protein compare
MMP_RS06930 +0.5 3.5 MBL fold metallo-hydrolase compare
MMP_RS00250 +0.4 3.9 Flp pilus assembly complex ATPase component TadA compare
MMP_RS08490 +0.4 3.9 hypothetical protein compare
MMP_RS07840 +0.4 1.0 ribonuclease III compare
MMP_RS00570 +0.4 1.7 protein-L-isoaspartate O-methyltransferase compare
MMP_RS08235 +0.4 2.7 hypothetical protein compare
MMP_RS00290 +0.4 3.6 hypothetical protein compare
MMP_RS09060 +0.4 3.6 hypothetical protein compare
MMP_RS08610 +0.4 3.1 flagellar protein F compare
MMP_RS01430 +0.4 3.0 mechanosensitive ion channel family protein compare
MMP_RS08080 +0.4 2.6 YchF/TatD family DNA exonuclease compare
MMP_RS09065 +0.4 3.7 hypothetical protein compare
MMP_RS09030 +0.4 2.4 hypothetical protein compare
MMP_RS07590 +0.4 3.4 hypothetical protein compare
MMP_RS06910 +0.4 2.9 RlmF-related methyltransferase compare
MMP_RS07880 +0.4 2.7 AAA family ATPase compare
MMP_RS07640 +0.4 2.7 mechanosensitive ion channel family protein compare
MMP_RS07595 +0.4 3.6 hypothetical protein compare
MMP_RS00395 +0.4 1.2 MGMT family protein compare
MMP_RS02595 +0.4 0.9 putative zinc-binding protein compare
MMP_RS06520 +0.4 1.8 DUF1786 domain-containing protein compare
MMP_RS07895 +0.4 1.9 cytochrome c compare
MMP_RS07985 +0.4 3.3 nitroreductase family protein compare
MMP_RS08265 +0.4 2.3 rubrerythrin compare
MMP_RS08455 +0.4 1.9 multiprotein bridging factor aMBF1 compare
MMP_RS08475 +0.4 2.5 ABC transporter permease compare
MMP_RS08430 +0.4 2.3 HAD family hydrolase compare
MMP_RS07775 +0.4 1.9 alanine dehydrogenase compare
MMP_RS06530 +0.4 3.0 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS01290 +0.4 3.1 class III signal peptide-containing protein compare
MMP_RS02310 +0.4 1.2 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS01675 +0.4 1.1 hypothetical protein compare
MMP_RS06555 +0.4 1.9 cupin domain-containing protein compare
MMP_RS08630 +0.4 2.4 archaellar assembly protein FlaJ compare
MMP_RS01435 +0.4 2.0 DMT family transporter compare
MMP_RS08205 +0.4 2.8 stage II sporulation protein M compare
MMP_RS05355 +0.4 0.6 hypothetical protein compare
MMP_RS06335 +0.4 2.6 HAD family hydrolase compare
MMP_RS08675 +0.4 1.9 class III signal peptide-containing protein compare
MMP_RS00545 +0.4 2.6 XRE family transcriptional regulator compare
MMP_RS05985 +0.4 1.4 hypothetical protein compare
MMP_RS08770 +0.4 2.9 hypothetical protein compare
MMP_RS06050 +0.4 2.3 ZIP family metal transporter compare
MMP_RS01310 +0.4 3.1 hypothetical protein compare
MMP_RS07410 +0.4 2.7 4-demethylwyosine synthase TYW1 compare
MMP_RS01275 +0.3 1.5 class III signal peptide-containing protein compare
MMP_RS01865 +0.3 0.9 GPR1/FUN34/YaaH family transporter compare
MMP_RS03760 +0.3 2.4 hypothetical protein compare
MMP_RS06545 +0.3 1.6 ferredoxin family protein compare
MMP_RS08830 +0.3 1.7 GTP-binding protein compare
MMP_RS06115 +0.3 2.8 class II aldolase/adducin family protein compare
MMP_RS03790 +0.3 2.0 hypothetical protein compare
MMP_RS08310 +0.3 1.1 TMEM165/GDT1 family protein compare
MMP_RS07155 +0.3 2.0 MFS transporter compare
MMP_RS01980 +0.3 2.7 trimeric intracellular cation channel family protein compare
MMP_RS00945 +0.3 0.8 PadR family transcriptional regulator compare
MMP_RS06975 +0.3 1.8 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS08130 +0.3 2.7 IGHMBP2 family helicase compare
MMP_RS02960 +0.3 2.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS02490 +0.3 1.5 hypothetical protein compare
MMP_RS03440 +0.3 0.7 MoaD/ThiS family protein compare
MMP_RS06710 +0.3 2.2 selenium-binding protein compare
MMP_RS01280 +0.3 2.7 DUF515 domain-containing protein compare
MMP_RS08380 +0.3 1.9 phosphatase PAP2 family protein compare
MMP_RS03150 +0.3 2.4 phosphoglycerate mutase compare
MMP_RS08625 +0.3 2.3 type II/IV secretion system ATPase subunit compare
MMP_RS02955 +0.3 1.8 DJ-1/PfpI family protein compare
MMP_RS05785 +0.3 2.5 ATP-binding protein compare
MMP_RS08615 +0.3 0.8 flagellar protein G compare
MMP_RS08160 +0.3 1.9 EamA family transporter compare
MMP_RS06875 +0.3 2.0 FAD-dependent oxidoreductase compare
MMP_RS01315 +0.3 2.7 DUF2341 domain-containing protein compare
MMP_RS08245 +0.3 2.1 DUF4013 domain-containing protein compare
MMP_RS02475 +0.3 1.0 hypothetical protein compare
MMP_RS03340 +0.3 0.4 ABC transporter ATP-binding protein compare
MMP_RS01620 +0.3 1.7 hypothetical protein compare
MMP_RS04055 +0.3 0.7 hypothetical protein compare
MMP_RS00950 +0.3 2.1 site-2 protease family protein compare
MMP_RS03450 +0.3 0.9 glycine synthesis protein GlyXS (from data) compare
MMP_RS00140 +0.3 1.5 DUF192 domain-containing protein compare
MMP_RS02815 +0.3 1.2 hypothetical protein compare
MMP_RS01085 +0.3 0.9 hypothetical protein compare
MMP_RS06900 +0.3 1.2 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS08230 +0.3 1.6 50S ribosomal protein L11 methyltransferase compare
MMP_RS05980 +0.3 1.7 ferritin compare
MMP_RS03535 +0.3 0.8 helix-turn-helix transcriptional regulator compare
MMP_RS00100 +0.3 2.2 tRNA pseudouridine(13) synthase TruD compare
MMP_RS00285 +0.3 1.6 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS06070 +0.3 2.2 iron ABC transporter substrate-binding protein compare
MMP_RS01125 +0.3 1.8 thioredoxin family protein compare
MMP_RS05960 +0.3 2.1 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS06190 +0.3 1.9 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS07145 +0.3 1.7 AmmeMemoRadiSam system protein B compare
MMP_RS07560 +0.2 1.3 prefoldin subunit alpha compare
MMP_RS00705 +0.2 0.6 hypothetical protein compare
MMP_RS07850 +0.2 1.0 prephenate dehydratase compare
MMP_RS03550 +0.2 0.8 DUF2124 domain-containing protein compare
MMP_RS08930 +0.2 0.7 hypothetical protein compare
MMP_RS07140 +0.2 2.1 TIGR00341 family protein compare
MMP_RS07970 +0.2 1.2 hypothetical protein compare
MMP_RS07905 +0.2 1.0 DUF3343 domain-containing protein compare
MMP_RS08555 +0.2 1.1 hypothetical protein compare
MMP_RS07800 +0.2 1.6 ATP-binding cassette domain-containing protein compare
MMP_RS06150 +0.2 2.0 hypothetical protein compare
MMP_RS02255 +0.2 1.4 hypothetical protein compare
MMP_RS08085 +0.2 1.9 hypothetical protein compare
MMP_RS07925 +0.2 1.2 haloacid dehalogenase compare
MMP_RS06560 +0.2 1.5 hypothetical protein compare
MMP_RS02360 +0.2 1.6 hypothetical protein compare
MMP_RS00955 +0.2 1.8 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS06495 +0.2 1.1 YkgJ family cysteine cluster protein compare
MMP_RS05530 +0.2 1.8 signal peptide peptidase SppA compare
MMP_RS03870 +0.2 1.2 purine NTPase compare
MMP_RS01285 +0.2 1.9 hypothetical protein compare
MMP_RS05685 +0.2 1.8 winged helix-turn-helix domain-containing protein compare
MMP_RS08760 +0.2 0.5 hypothetical protein compare
MMP_RS00645 +0.2 1.6 iron ABC transporter permease compare
MMP_RS05990 +0.2 1.3 DsrE family protein compare
MMP_RS08315 +0.2 0.8 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS08260 +0.2 1.3 DUF99 family protein compare
MMP_RS02895 +0.2 1.5 DHH family phosphoesterase compare
MMP_RS07805 +0.2 1.5 ABC transporter permease compare
MMP_RS01305 +0.2 2.0 hypothetical protein compare
MMP_RS01320 +0.2 1.2 hypothetical protein compare
MMP_RS08285 +0.2 1.5 serine/threonine protein kinase compare
MMP_RS05905 +0.2 1.3 undecaprenyl-diphosphate phosphatase compare
MMP_RS08500 +0.2 0.9 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS01255 +0.2 1.3 amino acid ABC transporter ATP-binding protein compare
MMP_RS01295 +0.2 1.5 hypothetical protein compare
MMP_RS08105 +0.2 1.2 6-carboxyhexanoate--CoA ligase compare
MMP_RS00185 +0.2 1.7 potassium channel protein compare
MMP_RS02725 +0.2 1.6 molybdate ABC transporter permease subunit compare
MMP_RS00480 +0.2 1.4 hypothetical protein compare
MMP_RS05935 +0.2 1.7 uroporphyrinogen decarboxylase family protein compare
MMP_RS06655 +0.2 1.7 glycoside hydrolase family 15 protein compare
MMP_RS01185 +0.2 1.5 hypothetical protein compare
MMP_RS08415 +0.2 0.7 radical SAM protein compare
MMP_RS00635 +0.2 1.3 energy-coupling factor transporter transmembrane protein EcfT compare
MMP_RS05965 +0.2 1.1 carboxymuconolactone decarboxylase family protein compare
MMP_RS04490 +0.2 1.5 CBS domain-containing protein compare
MMP_RS01165 +0.2 1.2 DUF434 domain-containing protein compare
MMP_RS06935 +0.2 1.4 protease complex subunit PrcB family protein compare
MMP_RS07100 +0.2 1.3 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For mixed community Ethanol in Methanococcus maripaludis S2

For mixed community Ethanol across organisms