Experiment set1IT058 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
AO353_22800 -5.2 -3.6 sulfite reductase compare
AO353_13165 -5.0 -4.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20625 -4.6 -4.4 3-isopropylmalate dehydratase compare
AO353_20635 -4.5 -14.0 3-isopropylmalate dehydrogenase compare
AO353_00310 -4.4 -10.7 transaldolase compare
AO353_13070 -4.4 -8.9 phosphoserine phosphatase compare
AO353_14505 -4.3 -13.1 ketol-acid reductoisomerase compare
AO353_20620 -4.3 -8.7 isopropylmalate isomerase compare
AO353_12070 -4.2 -11.2 imidazoleglycerol-phosphate dehydratase compare
AO353_12515 -4.2 -24.1 glutamate synthase compare
AO353_05110 -4.2 -13.6 histidinol dehydrogenase compare
AO353_05115 -4.2 -12.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_09240 -4.1 -4.0 acetylglutamate kinase compare
AO353_07230 -4.1 -18.9 anthranilate synthase compare
AO353_08185 -4.1 -12.6 methionine biosynthesis protein MetW compare
AO353_08180 -4.1 -15.4 homoserine O-acetyltransferase compare
AO353_14500 -4.1 -6.8 acetolactate synthase 3 regulatory subunit compare
AO353_08685 -4.1 -10.5 N-acetylglutamate synthase compare
AO353_20665 -4.0 -12.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12520 -3.9 -14.5 glutamate synthase compare
AO353_12085 -3.9 -10.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_14400 -3.9 -5.4 Fis family transcriptional regulator compare
AO353_12075 -3.9 -10.1 imidazole glycerol phosphate synthase subunit HisH compare
AO353_02070 -3.8 -9.4 prephenate dehydratase compare
AO353_07210 -3.8 -7.9 indole-3-glycerol-phosphate synthase compare
AO353_07220 -3.7 -10.2 anthranilate synthase compare
AO353_12360 -3.7 -10.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_07155 -3.6 -9.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_09000 -3.6 -7.3 argininosuccinate lyase compare
AO353_08475 -3.6 -11.5 phosphoserine phosphatase compare
AO353_02075 -3.6 -14.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08345 -3.6 -11.5 dihydroxy-acid dehydratase compare
AO353_10710 -3.6 -7.2 tryptophan synthase subunit beta compare
AO353_20695 -3.5 -8.1 O-succinylhomoserine sulfhydrylase compare
AO353_08510 -3.5 -6.6 3-phosphoglycerate dehydrogenase compare
AO353_07215 -3.5 -10.1 anthranilate phosphoribosyltransferase compare
AO353_10025 -3.4 -18.2 pyruvate carboxylase subunit B compare
AO353_20540 -3.4 -10.0 aromatic amino acid aminotransferase compare
AO353_10670 -3.4 -10.3 shikimate dehydrogenase compare
AO353_14495 -3.3 -14.8 acetolactate synthase 3 catalytic subunit compare
AO353_04155 -3.3 -14.9 ornithine carbamoyltransferase compare
AO353_10030 -3.2 -13.8 pyruvate carboxylase subunit A compare
AO353_08015 -3.2 -9.7 5,10-methylenetetrahydrofolate reductase compare
AO353_12115 -3.1 -4.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12500 -3.1 -3.0 shikimate kinase compare
AO353_04105 -3.0 -11.9 argininosuccinate synthase compare
AO353_03245 -3.0 -11.7 permease DsdX compare
AO353_10035 -2.9 -8.7 LysR family transcriptional regulator compare
AO353_02685 -2.8 -5.7 phosphoribosylglycinamide formyltransferase compare
AO353_16940 -2.8 -8.6 deoxycytidine triphosphate deaminase compare
AO353_19060 -2.8 -6.8 CysB family transcriptional regulator compare
AO353_14595 -2.7 -12.1 carbonate dehydratase compare
AO353_07525 -2.7 -15.4 biotin synthase compare
AO353_12365 -2.7 -3.8 phosphoribosyl-AMP cyclohydrolase compare
AO353_03360 -2.7 -10.5 glucose-6-phosphate dehydrogenase compare
AO353_10705 -2.7 -6.4 tryptophan synthase subunit alpha compare
AO353_15925 -2.7 -10.4 2-isopropylmalate synthase compare
AO353_03250 -2.6 -3.6 gluconokinase compare
AO353_14115 -2.6 -8.5 gamma-glutamyl kinase compare
AO353_03020 -2.5 -10.0 arginine N-succinyltransferase compare
AO353_08780 -2.5 -9.7 5-formyltetrahydrofolate cyclo-ligase compare
AO353_00825 -2.4 -5.5 porin compare
AO353_06495 -2.4 -5.6 gamma-glutamyl phosphate reductase compare
AO353_08165 -2.4 -4.0 pyrroline-5-carboxylate reductase compare
AO353_03420 -2.4 -6.9 phosphogluconate dehydratase compare
AO353_26885 -2.4 -9.4 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) conserved
AO353_14370 -2.3 -6.9 glucose-6-phosphate isomerase compare
AO353_21625 -2.2 -3.6 Fe/S biogenesis protein NfuA compare
AO353_08045 -2.2 -14.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_20175 -2.2 -5.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_13140 -2.2 -7.8 tRNA dimethylallyltransferase compare
AO353_09890 -2.2 -5.8 phosphate ABC transporter ATP-binding protein compare
AO353_13640 -2.1 -6.1 histidine kinase compare
AO353_09285 -2.0 -10.1 reactive intermediate/imine deaminase compare
AO353_12090 -1.9 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_02975 -1.9 -3.9 aspartate kinase compare
AO353_06045 -1.9 -8.8 exodeoxyribonuclease V subunit beta compare
AO353_06040 -1.9 -4.7 exodeoxyribonuclease V subunit alpha compare
AO353_10455 -1.9 -2.8 tRNA modification GTPase MnmE compare
AO353_07520 -1.8 -11.2 8-amino-7-oxononanoate synthase compare
AO353_02250 -1.8 -3.4 chorismate synthase compare
AO353_04355 -1.8 -3.3 homoserine dehydrogenase compare
AO353_20800 -1.8 -1.6 hypothetical protein compare
AO353_05075 -1.8 -9.7 adenylylsulfate kinase compare
AO353_11850 -1.8 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_07510 -1.8 -9.2 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_11770 -1.8 -2.8 molecular chaperone Hsp33 compare
AO353_03580 -1.7 -3.8 ATP-dependent DNA helicase RuvB compare
AO353_17750 -1.7 -4.0 transcriptional regulator compare
AO353_07505 -1.7 -7.7 dethiobiotin synthetase compare
AO353_03775 -1.7 -8.8 pyruvate kinase compare
AO353_08885 -1.6 -12.0 polyphosphate kinase compare
AO353_12145 -1.6 -4.9 nitrogen regulation protein NR(I) compare
AO353_07355 -1.5 -6.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03015 -1.5 -5.3 arginine N-succinyltransferase compare
AO353_03590 -1.5 -4.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_03615 -1.5 -3.7 cold-shock protein compare
AO353_05105 -1.5 -8.6 histidinol-phosphate aminotransferase compare
AO353_06320 -1.5 -4.4 AsnC family transcriptional regulator compare
AO353_05690 -1.4 -4.0 SsrA-binding protein compare
AO353_11165 -1.4 -8.1 hypothetical protein compare
AO353_12510 -1.4 -8.6 cell division protein compare
AO353_09660 -1.4 -2.7 hypothetical protein compare
AO353_08485 -1.4 -9.9 threonine dehydratase compare
AO353_03425 -1.4 -7.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_10445 -1.4 -1.7 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_04220 -1.4 -4.4 chemotaxis protein CheY compare
AO353_07075 -1.4 -5.3 elongation factor Tu compare
AO353_16440 -1.4 -3.9 ArsC family transcriptional regulator compare
AO353_27650 -1.3 -4.8 cell division protein FtsK compare
AO353_05080 -1.3 -8.2 sulfate adenylyltransferase compare
AO353_04175 -1.3 -5.0 glycerol uptake facilitator GlpF compare
AO353_14420 -1.3 -4.0 molecular chaperone DnaK compare
AO353_04565 -1.3 -5.5 nucleoid-associated protein compare
AO353_02810 -1.3 -7.0 histidine kinase compare
AO353_03585 -1.2 -3.0 ATP-dependent DNA helicase RuvA compare
AO353_02710 -1.2 -8.5 (p)ppGpp synthetase compare
AO353_10040 -1.2 -6.6 transcriptional regulator compare
AO353_07515 -1.2 -2.0 transporter compare
AO353_21630 -1.2 -3.1 precorrin-4 C11-methyltransferase compare
AO353_06050 -1.2 -5.6 exodeoxyribonuclease V subunit gamma compare
AO353_02720 -1.2 -4.4 cysteine synthase compare
AO353_15725 -1.2 -2.8 hypothetical protein compare
AO353_11530 -1.1 -6.2 diguanylate cyclase compare
AO353_01375 -1.1 -5.8 phosphate acyltransferase compare
AO353_14395 -1.0 -3.0 poly(A) polymerase compare
AO353_09050 -1.0 -3.1 recombinase XerC compare
AO353_14740 -1.0 -3.2 GTP-binding protein compare
AO353_14405 -1.0 -6.3 ATPase compare
AO353_25700 -1.0 -2.5 hypothetical protein compare
AO353_09905 -1.0 -6.2 phosphate-binding protein compare
AO353_00495 -1.0 -2.0 DNA topoisomerase I compare
AO353_16710 -1.0 -2.2 hypothetical protein compare
AO353_16805 -1.0 -4.3 recombinase RecA compare
AO353_03430 -1.0 -2.5 methylglyoxal synthase compare
AO353_02970 -1.0 -2.8 carbon storage regulator compare
AO353_28425 -1.0 -3.0 TetR family transcriptional regulator compare
AO353_14775 -0.9 -4.8 hypothetical protein compare
AO353_14935 -0.9 -3.0 aminopeptidase compare
AO353_09040 -0.9 -1.8 diaminopimelate epimerase compare
AO353_13665 -0.9 -4.8 hypothetical protein compare
AO353_12420 -0.9 -2.7 predicted FeS cluster maintenance protein (from data) compare
AO353_27995 -0.9 -3.2 RpiR family transcriptional regulator compare
AO353_13605 -0.9 -5.6 oxidoreductase compare
AO353_20630 -0.9 -4.8 SAM-dependent methyltransferase compare
AO353_22810 -0.8 -1.3 hypothetical protein compare
AO353_08265 -0.8 -4.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_07315 -0.8 -1.8 rRNA methyltransferase compare
AO353_02060 -0.8 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_20810 -0.8 -1.7 hypothetical protein compare
AO353_04800 -0.8 -3.7 short-chain dehydrogenase compare
AO353_02885 -0.8 -1.9 flagellar biosynthesis protein FlgN compare
AO353_02195 -0.8 -3.4 spermidine synthase compare
AO353_10435 -0.8 -5.0 chromosome partitioning protein compare
AO353_13590 -0.8 -3.8 cobalt-precorrin-6X reductase compare
AO353_00515 -0.8 -2.3 hypothetical protein compare
AO353_08505 -0.8 -5.5 FAD-linked oxidase compare
AO353_13100 -0.8 -1.2 GTPase RsgA compare
AO353_23790 -0.8 -2.3 metal-binding protein compare
AO353_09265 -0.8 -1.5 hypothetical protein compare
AO353_14990 -0.8 -1.8 hypothetical protein compare
AO353_13245 -0.8 -4.1 hypothetical protein compare
AO353_16450 -0.8 -5.4 protein-PII uridylyltransferase compare
AO353_02270 -0.8 -3.3 isochorismatase compare
AO353_13620 -0.8 -5.5 precorrin-3B C17-methyltransferase compare
AO353_09045 -0.7 -1.4 hypothetical protein compare
AO353_00490 -0.7 -1.5 PasA protein compare
AO353_03795 -0.7 -3.0 fumarate hydratase compare
AO353_01780 -0.7 -5.3 heat-shock protein Hsp90 compare
AO353_06775 -0.7 -4.1 dTDP-4-dehydrorhamnose reductase compare
AO353_25220 -0.7 -2.5 hypothetical protein compare
AO353_20835 -0.7 -2.8 Ribokinase (EC 2.7.1.15) (from data) compare
AO353_09010 -0.7 -2.8 hypothetical protein compare
AO353_09860 -0.7 -5.3 histidine kinase compare
AO353_23495 -0.7 -1.7 SAM-dependent methyltransferase compare
AO353_29215 -0.7 -1.3 alpha/beta hydrolase compare
AO353_00750 -0.7 -2.7 GntR family transcriptional regulator compare
AO353_12150 -0.7 -2.7 histidine kinase compare
AO353_10825 -0.7 -5.7 hypothetical protein compare
AO353_21615 -0.7 -5.2 methionine synthase compare
AO353_05880 -0.7 -1.7 plasmid stabilization protein compare
AO353_10430 -0.7 -2.3 chromosome partitioning protein ParB compare
AO353_27550 -0.7 -1.6 hypothetical protein compare
AO353_00185 -0.7 -1.4 phage tail protein compare
AO353_27000 -0.7 -1.1 hypothetical protein compare
AO353_19360 -0.7 -1.6 peroxiredoxin compare
AO353_21640 -0.7 -1.5 cobalt transporter compare
AO353_13160 -0.7 -1.6 membrane protease HflC compare
AO353_01550 -0.7 -3.3 hypothetical protein compare
AO353_03410 -0.7 -1.8 chemotaxis protein CheY compare
AO353_21655 -0.7 -2.2 cobalamin biosynthesis protein CobW compare
AO353_22375 -0.6 -2.2 cytochrome c-550 PedF compare
AO353_02000 -0.6 -2.5 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_17850 -0.6 -2.1 SAM-dependent methyltransferase compare
AO353_20200 -0.6 -2.3 peptidylprolyl isomerase compare
AO353_15785 -0.6 -4.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_04520 -0.6 -2.9 elongation factor 4 compare
AO353_21905 -0.6 -2.2 hypothetical protein compare
AO353_16210 -0.6 -4.6 XRE family transcriptional regulator compare
AO353_12105 -0.6 -3.3 peptidase S41 compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Gluconic Acid sodium salt in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Gluconic Acid sodium salt across organisms