Experiment set1IT058 for Paraburkholderia graminis OAS925

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
ABIE53_000838 -3.9 -9.5 starvation-inducible DNA-binding protein compare
ABIE53_001228 -3.9 -5.4 phosphoadenosine phosphosulfate reductase compare
ABIE53_000414 -3.8 -17.7 homoserine O-acetyltransferase compare
ABIE53_000045 -3.8 -7.7 5-formyltetrahydrofolate cyclo-ligase compare
ABIE53_003305 -3.8 -8.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_004866 -3.7 -18.2 RNA polymerase primary sigma factor compare
ABIE53_003735 -3.7 -4.4 hypothetical protein compare
ABIE53_000306 -3.6 -1.7 general secretion pathway protein M compare
ABIE53_001232 -3.6 -2.5 sirohydrochlorin cobaltochelatase compare
ABIE53_001314 -3.6 -10.6 phosphoenolpyruvate carboxylase compare
ABIE53_005782 -3.6 -1.8 hypothetical protein compare
ABIE53_000667 -3.6 -9.7 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_001229 -3.5 -8.1 sulfate adenylyltransferase subunit 2 compare
ABIE53_000768 -3.5 -11.0 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_004804 -3.5 -6.6 3-isopropylmalate dehydrogenase compare
ABIE53_003734 -3.5 -10.6 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_004801 -3.4 -7.6 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit compare
ABIE53_004811 -3.4 -6.9 tryptophan synthase alpha chain compare
ABIE53_005863 -3.4 -12.8 cyclic di-GMP phosphodiesterase Gmr compare
ABIE53_001226 -3.4 -7.5 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_002546 -3.4 -3.9 cell wall-associated NlpC family hydrolase compare
ABIE53_003157 -3.4 -9.2 chorismate mutase/prephenate dehydratase compare
ABIE53_000061 -3.3 -6.3 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_003638 -3.3 -3.2 ribulose-phosphate 3-epimerase compare
ABIE53_003306 -3.3 -9.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_002321 -3.2 -5.8 ribokinase compare
ABIE53_004803 -3.2 -6.5 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_004817 -3.2 -10.9 O-succinylhomoserine sulfhydrylase compare
ABIE53_003588 -3.2 -4.8 glutamate 5-kinase compare
ABIE53_001230 -3.2 -10.7 sulfate adenylyltransferase subunit 1 compare
ABIE53_006147 -3.1 -2.1 TetR/AcrR family transcriptional repressor of bet genes compare
ABIE53_002116 -3.1 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_003428 -3.0 -4.6 phosphoglycerate kinase compare
ABIE53_004068 -3.0 -1.6 putative NBD/HSP70 family sugar kinase compare
ABIE53_001225 -3.0 -6.9 LysR family cys regulon transcriptional activator compare
ABIE53_002004 -3.0 -9.6 anti-sigma factor RsiW compare
ABIE53_003640 -3.0 -8.5 anthranilate synthase component 1 compare
ABIE53_001416 -2.9 -7.0 transaldolase compare
ABIE53_002857 -2.9 -12.9 phosphomethylpyrimidine synthase compare
ABIE53_002117 -2.9 -6.1 ATP-dependent Lon protease compare
ABIE53_001644 -2.9 -3.9 aromatic-amino-acid transaminase compare
ABIE53_000840 -2.9 -5.8 pyrroline-5-carboxylate reductase compare
ABIE53_002138 -2.9 -7.1 glucose-6-phosphate isomerase compare
ABIE53_003749 -2.8 -7.9 diaminopimelate decarboxylase compare
ABIE53_003158 -2.8 -4.6 phosphoserine aminotransferase compare
ABIE53_003159 -2.8 -7.1 phosphoserine aminotransferase compare
ABIE53_000663 -2.8 -15.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_002077 -2.8 -1.9 phosphoserine phosphatase compare
ABIE53_003017 -2.7 -11.4 trehalose 6-phosphate phosphatase compare
ABIE53_000423 -2.6 -4.1 DnaK suppressor protein compare
ABIE53_003494 -2.5 -3.4 Holliday junction DNA helicase RuvA compare
ABIE53_000262 -2.5 -2.4 chromosome partitioning protein compare
ABIE53_004227 -2.5 -5.7 signal transduction histidine kinase compare
ABIE53_001227 -2.4 -2.3 uncharacterized protein (DUF934 family) compare
ABIE53_003565 -2.4 -5.0 thiol-disulfide isomerase/thioredoxin compare
ABIE53_003444 -2.3 -4.8 succinyl-CoA synthetase alpha subunit compare
ABIE53_003531 -2.3 -2.2 Fur family ferric uptake transcriptional regulator compare
ABIE53_000063 -2.2 -4.4 adenosylhomocysteinase compare
ABIE53_000427 -2.2 -4.4 uncharacterized protein YigA (DUF484 family) compare
ABIE53_003162 -2.2 -3.3 OOP family OmpA-OmpF porin compare
ABIE53_003517 -2.2 -6.2 phosphogluconate dehydratase compare
ABIE53_002494 -2.2 -3.9 outer membrane protein compare
ABIE53_000403 -2.2 -2.9 rod shape-determining protein MreD compare
ABIE53_002528 -2.2 -2.1 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_003733 -2.1 -4.1 glutamate synthase domain-containing protein 3 compare
ABIE53_003160 -2.1 -11.1 hypothetical protein compare
ABIE53_004325 -2.0 -3.0 hypothetical protein compare
ABIE53_000567 -2.0 -2.1 Lrp/AsnC family leucine-responsive transcriptional regulator compare
ABIE53_002794 -2.0 -3.6 PAS domain S-box-containing protein compare
ABIE53_001769 -2.0 -3.0 succinylornithine aminotransferase compare
ABIE53_002762 -2.0 -3.8 enolase compare
ABIE53_002739 -2.0 -4.2 outer membrane protein assembly factor BamB compare
ABIE53_000678 -2.0 -7.3 cytochrome c oxidase subunit 3 compare
ABIE53_001273 -2.0 -9.9 glucokinase compare
ABIE53_001544 -2.0 -2.6 coproporphyrinogen III oxidase compare
ABIE53_000683 -1.9 -9.9 protoheme IX farnesyltransferase compare
ABIE53_003536 -1.9 -6.8 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_002862 -1.9 -8.6 outer membrane protein assembly factor BamC compare
ABIE53_003674 -1.9 -4.7 AcrR family transcriptional regulator compare
ABIE53_003445 -1.9 -4.3 succinyl-CoA synthetase beta subunit compare
ABIE53_001989 -1.9 -3.3 repressor LexA compare
ABIE53_000674 -1.9 -7.7 cytochrome c oxidase subunit 1 compare
ABIE53_001572 -1.8 -4.0 hypothetical protein compare
ABIE53_000633 -1.8 -2.1 hypothetical protein compare
ABIE53_004718 -1.8 -2.1 LysR family glycine cleavage system transcriptional activator compare
ABIE53_000883 -1.8 -1.9 colicin import membrane protein compare
ABIE53_003495 -1.8 -3.5 Holliday junction DNA helicase RuvB compare
ABIE53_000885 -1.8 -7.2 biopolymer transport protein TolQ compare
ABIE53_003368 -1.8 -2.6 antitoxin VapB compare
ABIE53_002703 -1.8 -0.8 aspartate kinase compare
ABIE53_000830 -1.7 -4.2 preprotein translocase subunit YajC compare
ABIE53_000465 -1.7 -11.5 cation diffusion facilitator family transporter compare
ABIE53_000666 -1.7 -3.6 preprotein translocase subunit SecB compare
ABIE53_000682 -1.6 -8.7 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_000798 -1.6 -3.7 peptidyl-prolyl cis-trans isomerase SurA compare
ABIE53_003383 -1.6 -8.5 sugar (pentulose or hexulose) kinase compare
ABIE53_003043 -1.6 -11.1 RNA polymerase sigma-70 factor (ECF subfamily) compare
ABIE53_000649 -1.6 -3.2 peroxiredoxin compare
ABIE53_001135 -1.6 -2.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
ABIE53_002981 -1.5 -2.1 hypothetical protein compare
ABIE53_004826 -1.5 -9.8 1,4-alpha-glucan branching enzyme compare
ABIE53_000394 -1.5 -8.4 nitrogen fixation/metabolism regulation signal transduction histidine kinase compare
ABIE53_003186 -1.5 -6.7 disulfide bond formation protein DsbB compare
ABIE53_003384 -1.5 -6.2 threonine dehydrogenase-like Zn-dependent dehydrogenase compare
ABIE53_002325 -1.5 -5.0 ribose transport system substrate-binding protein compare
ABIE53_002587 -1.5 -2.2 DHA2 family multidrug resistance protein compare
ABIE53_000650 -1.4 -7.9 thiol-disulfide isomerase/thioredoxin compare
ABIE53_005142 -1.4 -1.4 acyl-CoA reductase-like NAD-dependent aldehyde dehydrogenase compare
ABIE53_004263 -1.4 -2.4 nicotinate dehydrogenase subunit A compare
ABIE53_005733 -1.4 -3.7 malonate-semialdehyde dehydrogenase (acetylating)/methylmalonate-semialdehyde dehydrogenase compare
ABIE53_003398 -1.4 -8.1 zinc/manganese transport system substrate-binding protein compare
ABIE53_005281 -1.4 -2.4 cytochrome c oxidase subunit 2 compare
ABIE53_001571 -1.4 -6.2 putative Fe-S protein YdhL (DUF1289 family) compare
ABIE53_004146 -1.4 -2.2 hypothetical protein compare
ABIE53_005849 -1.4 -4.0 uncharacterized protein YndB with AHSA1/START domain compare
ABIE53_002281 -1.4 -2.3 succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase compare
ABIE53_006131 -1.4 -2.2 phenylpropionate dioxygenase-like ring-hydroxylating dioxygenase large terminal subunit compare
ABIE53_003400 -1.4 -4.1 zinc/manganese transport system permease protein compare
ABIE53_000598 -1.4 -4.8 thiol:disulfide interchange protein DsbA compare
ABIE53_003586 -1.3 -6.8 putative (di)nucleoside polyphosphate hydrolase compare
ABIE53_001795 -1.3 -1.7 CrcB protein compare
ABIE53_002393 -1.3 -2.8 allantoin racemase compare
ABIE53_001848 -1.3 -2.5 putative 3-demethylubiquinone-9 3-methyltransferase (glyoxalase superfamily) compare
ABIE53_001720 -1.3 -1.9 LysR family transcriptional regulator of abg operon compare
ABIE53_006378 -1.3 -1.9 biopolymer transport protein ExbB compare
ABIE53_002987 -1.3 -6.4 hypothetical protein compare
ABIE53_005342 -1.3 -1.8 cytochrome o ubiquinol oxidase subunit 3 compare
ABIE53_002352 -1.3 -6.1 AcrR family transcriptional regulator compare
ABIE53_002055 -1.3 -5.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABIE53_002102 -1.3 -6.4 hypothetical protein compare
ABIE53_002335 -1.3 -7.2 LacI family kdg operon repressor compare
ABIE53_001757 -1.2 -2.0 ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase compare
ABIE53_003737 -1.2 -9.0 outer membrane protein compare
ABIE53_000464 -1.2 -3.2 DNA-binding protein H-NS compare
ABIE53_003711 -1.2 -7.2 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
ABIE53_001588 -1.2 -3.7 triosephosphate isomerase compare
ABIE53_005508 -1.2 -2.0 hypothetical protein compare
ABIE53_003685 -1.2 -7.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE53_002496 -1.2 -7.3 regulator of sigma E protease compare
ABIE53_006420 -1.2 -1.1 hyperosmotically inducible protein compare
ABIE53_005529 -1.2 -2.8 putative transcriptional regulator YheO compare
ABIE53_004602 -1.2 -1.5 hypothetical protein compare
ABIE53_003374 -1.2 -8.8 cyclopropane-fatty-acyl-phospholipid synthase compare
ABIE53_004415 -1.2 -2.4 hypothetical protein compare
ABIE53_001420 -1.2 -3.3 cytochrome c553 compare
ABIE53_001994 -1.2 -4.5 LysR family cys regulon transcriptional activator compare
ABIE53_005596 -1.2 -5.7 DNA-binding IclR family transcriptional regulator compare
ABIE53_003525 -1.2 -8.9 LPS-assembly lipoprotein compare
ABIE53_002424 -1.1 -5.5 anti-sigma factor RsiW compare
ABIE53_006092 -1.1 -4.1 DNA-binding FadR family transcriptional regulator compare
ABIE53_006241 -1.1 -1.7 sulfonate transport system ATP-binding protein compare
ABIE53_003712 -1.1 -7.1 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
ABIE53_002202 -1.1 -2.8 glc operon protein GlcG compare
ABIE53_003684 -1.1 -9.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
ABIE53_004210 -1.1 -5.0 LacI family fructose operon transcriptional repressor compare
ABIE53_006508 -1.1 -3.1 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_003361 -1.1 -4.7 integrase/recombinase XerD compare
ABIE53_005022 -1.1 -1.6 putative deacylase compare
ABIE53_001772 -1.1 -1.1 succinylglutamic semialdehyde dehydrogenase compare
ABIE53_003231 -1.0 -1.2 DNA-directed RNA polymerase subunit omega compare
ABIE53_005704 -1.0 -1.8 polyferredoxin compare
ABIE53_000614 -1.0 -3.0 rubrerythrin compare
ABIE53_002067 -1.0 -4.8 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE53_003973 -1.0 -1.8 3-oxoadipate enol-lactonase compare
ABIE53_000282 -1.0 -6.3 two-component system OmpR family response regulator compare
ABIE53_000843 -1.0 -2.0 glycolate oxidase FAD binding subunit compare
ABIE53_004775 -1.0 -3.9 transketolase compare
ABIE53_003881 -1.0 -1.3 dihydroxyacetone kinase-like protein compare
ABIE53_004927 -1.0 -5.8 galactose mutarotase-like enzyme compare
ABIE53_004774 -1.0 -3.7 DeoR/GlpR family transcriptional regulator of sugar metabolism compare
ABIE53_001007 -1.0 -1.3 hypothetical protein compare
ABIE53_001500 -1.0 -1.2 enoyl-CoA hydratase/carnithine racemase compare
ABIE53_003293 -1.0 -4.1 nicotinate-nucleotide pyrophosphorylase (carboxylating) compare
ABIE53_002933 -1.0 -2.0 methyl-accepting chemotaxis protein compare
ABIE53_003019 -1.0 -1.8 copper(I)-binding protein compare
ABIE53_004265 -1.0 -2.2 branched-chain amino acid transport system ATP-binding protein compare
ABIE53_005834 -1.0 -1.7 isoquinoline 1-oxidoreductase alpha subunit compare
ABIE53_004852 -1.0 -6.5 DNA polymerase-1 compare
ABIE53_001630 -1.0 -1.3 putative secreted hydrolase compare
ABIE53_003689 -1.0 -4.8 sec-independent protein translocase protein TatB compare
ABIE53_002101 -1.0 -5.1 two-component system phosphate regulon response regulator OmpR compare
ABIE53_003683 -1.0 -7.7 ubiquinol-cytochrome c reductase cytochrome c1 subunit compare
ABIE53_000402 -1.0 -2.6 penicillin-binding protein 2 compare
ABIE53_003754 -1.0 -5.5 cbb3-type cytochrome c oxidase subunit III compare
ABIE53_001421 -1.0 -1.3 cytochrome c553 compare
ABIE53_003664 -0.9 -3.7 release factor glutamine methyltransferase compare
ABIE53_005393 -0.9 -2.0 hypothetical protein compare
ABIE53_000833 -0.9 -3.4 ATP-dependent DNA helicase RecG compare
ABIE53_005051 -0.9 -1.2 hypothetical protein compare
ABIE53_003391 -0.9 -3.2 DNA-binding transcriptional regulator LsrR (DeoR family) compare
ABIE53_003815 -0.9 -1.9 tRNA-Arg compare
ABIE53_003298 -0.9 -3.4 phosphoribosylglycinamide formyltransferase-1 compare
ABIE53_005275 -0.9 -2.4 GNAT superfamily N-acetyltransferase compare
ABIE53_005395 -0.9 -1.8 hypothetical protein compare
ABIE53_005284 -0.9 -1.7 hypothetical protein compare
ABIE53_003932 -0.9 -2.5 hypothetical protein compare
ABIE53_003957 -0.9 -1.6 putative deacylase compare
ABIE53_002324 -0.9 -3.3 ribose transport system ATP-binding protein compare
ABIE53_002698 -0.9 -2.9 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_004035 -0.9 -1.0 putative O-methyltransferase YrrM compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Ribose in Paraburkholderia graminis OAS925

For carbon source D-Ribose across organisms