Experiment set1IT057 for Pseudomonas fluorescens FW300-N2E3

Compare to:

a-Ketoglutaric acid disodium salt hydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_13070 -5.1 -3.5 phosphoserine phosphatase compare
AO353_07220 -4.9 -5.8 anthranilate synthase compare
AO353_12085 -4.8 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_13165 -4.7 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20625 -4.7 -3.3 3-isopropylmalate dehydratase compare
AO353_20635 -4.5 -12.1 3-isopropylmalate dehydrogenase compare
AO353_20695 -4.5 -6.8 O-succinylhomoserine sulfhydrylase compare
AO353_08185 -4.4 -9.8 methionine biosynthesis protein MetW compare
AO353_20665 -4.4 -9.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_08475 -4.4 -9.8 phosphoserine phosphatase compare
AO353_12090 -4.4 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12070 -4.4 -8.4 imidazoleglycerol-phosphate dehydratase compare
AO353_05115 -4.4 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_07230 -4.3 -16.6 anthranilate synthase compare
AO353_12365 -4.3 -4.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_02070 -4.3 -7.2 prephenate dehydratase compare
AO353_00430 -4.3 -5.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07215 -4.3 -7.2 anthranilate phosphoribosyltransferase compare
AO353_12515 -4.2 -21.7 glutamate synthase compare
AO353_07210 -4.2 -5.7 indole-3-glycerol-phosphate synthase compare
AO353_20540 -4.1 -8.7 aromatic amino acid aminotransferase compare
AO353_12520 -4.1 -12.9 glutamate synthase compare
AO353_02075 -4.1 -11.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_14505 -4.0 -13.2 ketol-acid reductoisomerase compare
AO353_12075 -4.0 -8.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08180 -3.9 -14.1 homoserine O-acetyltransferase compare
AO353_03810 -3.9 -16.2 Alpha-ketoglutarate permease, MFS superfamily (from data) conserved
AO353_10670 -3.8 -9.2 shikimate dehydrogenase compare
AO353_20620 -3.8 -8.0 isopropylmalate isomerase compare
AO353_14400 -3.8 -4.5 Fis family transcriptional regulator compare
AO353_11775 -3.8 -9.1 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_14500 -3.7 -7.2 acetolactate synthase 3 regulatory subunit compare
AO353_22800 -3.7 -5.0 sulfite reductase compare
AO353_10710 -3.7 -5.6 tryptophan synthase subunit beta compare
AO353_08510 -3.7 -5.6 3-phosphoglycerate dehydrogenase compare
AO353_09240 -3.6 -4.3 acetylglutamate kinase compare
AO353_08685 -3.6 -10.5 N-acetylglutamate synthase compare
AO353_08345 -3.6 -10.7 dihydroxy-acid dehydratase compare
AO353_14495 -3.6 -12.9 acetolactate synthase 3 catalytic subunit compare
AO353_12115 -3.6 -4.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12500 -3.5 -2.4 shikimate kinase compare
AO353_07155 -3.5 -9.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12360 -3.4 -10.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_05110 -3.4 -12.9 histidinol dehydrogenase compare
AO353_14370 -3.4 -7.5 glucose-6-phosphate isomerase compare
AO353_09000 -3.3 -7.1 argininosuccinate lyase compare
AO353_04105 -3.3 -10.3 argininosuccinate synthase compare
AO353_04155 -3.2 -14.2 ornithine carbamoyltransferase compare
AO353_03800 -3.2 -13.4 cytochrome C biogenesis protein CcmE conserved
AO353_14115 -3.2 -7.7 gamma-glutamyl kinase compare
AO353_19060 -3.2 -6.0 CysB family transcriptional regulator compare
AO353_05105 -3.1 -12.8 histidinol-phosphate aminotransferase compare
AO353_10705 -3.1 -5.6 tryptophan synthase subunit alpha compare
AO353_03805 -3.1 -5.1 C4-dicarboxylate ABC transporter conserved
AO353_12460 -3.0 -9.6 malate dehydrogenase compare
AO353_16940 -3.0 -8.0 deoxycytidine triphosphate deaminase compare
AO353_07515 -2.7 -3.2 transporter compare
AO353_08015 -2.7 -8.5 5,10-methylenetetrahydrofolate reductase compare
AO353_15925 -2.7 -10.5 2-isopropylmalate synthase compare
AO353_03020 -2.7 -9.1 arginine N-succinyltransferase compare
AO353_02685 -2.6 -4.6 phosphoribosylglycinamide formyltransferase compare
AO353_14595 -2.6 -11.1 carbonate dehydratase compare
AO353_06495 -2.5 -5.7 gamma-glutamyl phosphate reductase compare
AO353_13160 -2.5 -3.4 membrane protease HflC compare
AO353_09285 -2.5 -10.6 reactive intermediate/imine deaminase compare
AO353_15185 -2.5 -6.3 ATPase compare
AO353_03795 -2.4 -5.6 fumarate hydratase compare
AO353_08165 -2.3 -3.7 pyrroline-5-carboxylate reductase compare
AO353_11770 -2.3 -2.7 molecular chaperone Hsp33 compare
AO353_02975 -2.3 -3.6 aspartate kinase compare
AO353_07355 -2.2 -7.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_06040 -2.1 -4.8 exodeoxyribonuclease V subunit alpha compare
AO353_06050 -2.1 -7.9 exodeoxyribonuclease V subunit gamma compare
AO353_20495 -2.0 -2.4 NUDIX hydrolase compare
AO353_00495 -2.0 -3.0 DNA topoisomerase I compare
AO353_20095 -2.0 -6.1 histidine kinase compare
AO353_00825 -2.0 -5.1 porin compare
AO353_06045 -2.0 -8.0 exodeoxyribonuclease V subunit beta compare
AO353_07525 -1.9 -12.4 biotin synthase compare
AO353_15490 -1.9 -2.3 hypothetical protein compare
AO353_14420 -1.9 -5.0 molecular chaperone DnaK compare
AO353_03585 -1.9 -2.8 ATP-dependent DNA helicase RuvA compare
AO353_13140 -1.8 -6.1 tRNA dimethylallyltransferase compare
AO353_20175 -1.8 -4.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_13640 -1.7 -3.8 histidine kinase compare
AO353_04355 -1.7 -2.3 homoserine dehydrogenase compare
AO353_00750 -1.7 -3.9 GntR family transcriptional regulator compare
AO353_10025 -1.7 -11.5 pyruvate carboxylase subunit B compare
AO353_19145 -1.7 -4.7 protease HtpX compare
AO353_02000 -1.7 -4.3 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_11850 -1.7 -3.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_15250 -1.6 -3.8 cytochrome B compare
AO353_14405 -1.6 -9.4 ATPase compare
AO353_03615 -1.6 -3.6 cold-shock protein compare
AO353_08880 -1.6 -2.9 exopolyphosphatase compare
AO353_03365 -1.6 -7.6 transcriptional regulator compare
AO353_10430 -1.6 -3.2 chromosome partitioning protein ParB compare
AO353_02005 -1.6 -1.6 hypothetical protein compare
AO353_10030 -1.5 -8.2 pyruvate carboxylase subunit A compare
AO353_03590 -1.5 -3.6 crossover junction endodeoxyribonuclease RuvC compare
AO353_00460 -1.5 -3.2 TetR family transcriptional regulator compare
AO353_12510 -1.5 -8.3 cell division protein compare
AO353_07505 -1.5 -6.6 dethiobiotin synthetase compare
AO353_14150 -1.5 -2.1 peptidylprolyl isomerase compare
AO353_10445 -1.5 -2.1 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_10035 -1.4 -6.6 LysR family transcriptional regulator compare
AO353_05075 -1.4 -7.4 adenylylsulfate kinase compare
AO353_08780 -1.4 -6.8 5-formyltetrahydrofolate cyclo-ligase compare
AO353_05420 -1.4 -1.8 peptide chain release factor 3 compare
AO353_13155 -1.4 -4.0 hypothetical protein compare
AO353_12935 -1.4 -3.5 glycosyltransferase compare
AO353_08045 -1.4 -10.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_03025 -1.3 -4.2 acetylornithine aminotransferase compare
AO353_04175 -1.3 -4.5 glycerol uptake facilitator GlpF compare
AO353_19250 -1.3 -1.8 molybdenum cofactor guanylyltransferase compare
AO353_07610 -1.3 -1.3 hypothetical protein compare
AO353_09345 -1.3 -2.4 hypothetical protein compare
AO353_10730 -1.3 -2.1 hypothetical protein compare
AO353_05080 -1.3 -7.5 sulfate adenylyltransferase compare
AO353_07315 -1.3 -2.4 rRNA methyltransferase compare
AO353_01375 -1.3 -4.6 phosphate acyltransferase compare
AO353_03580 -1.3 -2.2 ATP-dependent DNA helicase RuvB compare
AO353_09890 -1.3 -4.7 phosphate ABC transporter ATP-binding protein compare
AO353_06460 -1.2 -5.3 hypothetical protein compare
AO353_07510 -1.2 -6.9 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_02060 -1.2 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_05625 -1.2 -1.3 transcription elongation factor GreA compare
AO353_10945 -1.2 -2.9 cytochrome C compare
AO353_02465 -1.2 -1.5 hypothetical protein compare
AO353_08485 -1.2 -8.0 threonine dehydratase compare
AO353_10435 -1.2 -5.9 chromosome partitioning protein compare
AO353_13225 -1.2 -2.3 50S ribosomal protein L9 compare
AO353_09265 -1.2 -2.3 hypothetical protein compare
AO353_16345 -1.1 -2.4 energy transducer TonB compare
AO353_12080 -1.1 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_07520 -1.1 -7.3 8-amino-7-oxononanoate synthase compare
AO353_21615 -1.1 -7.4 methionine synthase compare
AO353_07075 -1.1 -4.2 elongation factor Tu compare
AO353_27650 -1.1 -3.5 cell division protein FtsK compare
AO353_21625 -1.1 -2.2 Fe/S biogenesis protein NfuA compare
AO353_22500 -1.1 -2.0 hypothetical protein compare
AO353_01410 -1.1 -2.7 ribonuclease E compare
AO353_16710 -1.1 -2.6 hypothetical protein compare
AO353_09040 -1.1 -1.1 diaminopimelate epimerase compare
AO353_12345 -1.1 -2.1 twin-arginine protein translocation system subunit TatC compare
AO353_26595 -1.0 -3.1 copper resistance protein CopD compare
AO353_20630 -1.0 -4.9 SAM-dependent methyltransferase compare
AO353_10455 -1.0 -1.8 tRNA modification GTPase MnmE compare
AO353_19810 -1.0 -1.5 filamentous hemagglutinin compare
AO353_19090 -1.0 -2.1 MarR family transcriptional regulator compare
AO353_06775 -1.0 -4.4 dTDP-4-dehydrorhamnose reductase compare
AO353_00515 -1.0 -2.9 hypothetical protein compare
AO353_00660 -1.0 -2.5 transcriptional regulator compare
AO353_23285 -1.0 -1.4 hypothetical protein compare
AO353_12710 -1.0 -1.6 thioredoxin compare
AO353_05690 -1.0 -2.2 SsrA-binding protein compare
AO353_26090 -1.0 -1.5 hypothetical protein compare
AO353_02020 -1.0 -3.9 hypothetical protein compare
AO353_17475 -1.0 -3.4 hypothetical protein compare
AO353_18335 -1.0 -2.2 hypothetical protein compare
AO353_08470 -1.0 -2.9 RNA pyrophosphohydrolase compare
AO353_18120 -1.0 -1.6 hypothetical protein compare
AO353_20785 -1.0 -3.2 carbon storage regulator CsrA compare
AO353_16805 -1.0 -3.9 recombinase RecA compare
AO353_29340 -1.0 -2.6 transporter compare
AO353_26055 -0.9 -2.1 hypothetical protein compare
AO353_18715 -0.9 -1.6 histidine kinase compare
AO353_00620 -0.9 -2.1 cytochrome C oxidase Cbb3 compare
AO353_10725 -0.9 -1.3 dodecin flavoprotein compare
AO353_10055 -0.9 -6.5 DNA helicase II compare
AO353_20660 -0.9 -2.6 pseudouridine synthase compare
AO353_18560 -0.9 -1.7 class I peptide chain release factor compare
AO353_21100 -0.9 -2.5 DNA-binding protein compare
AO353_16210 -0.9 -6.0 XRE family transcriptional regulator compare
AO353_21805 -0.9 -3.1 peptidylprolyl isomerase compare
AO353_13245 -0.9 -4.3 hypothetical protein compare
AO353_22360 -0.9 -2.4 ABC transporter ATP-binding protein compare
AO353_11085 -0.9 -3.6 NAD(P) transhydrogenase compare
AO353_04565 -0.9 -3.8 nucleoid-associated protein compare
AO353_11720 -0.9 -2.8 taurine transporter ATP-binding subunit compare
AO353_00955 -0.9 -2.8 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_26045 -0.9 -1.8 hypothetical protein compare
AO353_24625 -0.9 -2.7 hypothetical protein compare
AO353_20170 -0.9 -3.2 trigger factor compare
AO353_00115 -0.9 -1.6 hypothetical protein compare
AO353_01350 -0.9 -4.4 4-amino-4-deoxychorismate lyase compare
AO353_00865 -0.9 -5.6 phosphoenolpyruvate synthase compare
AO353_06850 -0.9 -3.2 MFS transporter compare
AO353_26400 -0.9 -2.4 hypothetical protein compare
AO353_10630 -0.9 -2.8 16S rRNA methyltransferase compare
AO353_02720 -0.9 -3.1 cysteine synthase compare
AO353_03015 -0.9 -3.2 arginine N-succinyltransferase compare
AO353_16845 -0.9 -4.7 LysR family transcriptional regulator compare
AO353_00310 -0.9 -4.8 transaldolase compare
AO353_12055 -0.8 -3.8 cell envelope biogenesis protein AsmA compare
AO353_20370 -0.8 -2.4 MerR family transcriptional regulator compare
AO353_19530 -0.8 -1.3 quinohemoprotein amine dehydrogenase compare
AO353_07940 -0.8 -3.1 hypothetical protein compare
AO353_09720 -0.8 -0.7 hypothetical protein compare
AO353_09915 -0.8 -4.0 long-chain acyl-CoA thioester hydrolase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source a-Ketoglutaric acid disodium salt hydrate in Pseudomonas fluorescens FW300-N2E3

For carbon source a-Ketoglutaric acid disodium salt hydrate across organisms