Experiment set1IT057 for Rahnella sp. WP5

Compare to:

L-Serine nitrogen source; ShewMM media; shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS12400 -5.2 -7.1 RNA polymerase factor sigma-54 compare
EX31_RS02520 -4.9 -4.7 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS12510 -4.8 -19.5 FAD-dependent oxidoreductase compare
EX31_RS02515 -4.8 -4.6 PAS domain-containing protein compare
EX31_RS11470 -4.6 -4.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS02530 -4.5 -6.9 ABC transporter ATP-binding protein compare
EX31_RS03685 -4.4 -16.7 3-isopropylmalate dehydrogenase compare
EX31_RS11460 -4.4 -4.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS14180 -4.3 -18.4 argininosuccinate lyase compare
EX31_RS22625 -4.2 -5.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS15020 -4.2 -18.9 ketol-acid reductoisomerase compare
EX31_RS23245 -4.2 -22.9 asparagine synthase B compare
EX31_RS03690 -4.2 -15.0 3-isopropylmalate dehydratase large subunit compare
EX31_RS23490 -4.2 -2.9 cell envelope integrity protein TolA compare
EX31_RS03940 -4.1 -13.7 homoserine kinase compare
EX31_RS23415 -4.0 -10.6 citrate synthase compare
EX31_RS25365 -4.0 -2.7 50S ribosomal protein L31 compare
EX31_RS14185 -4.0 -10.6 acetylglutamate kinase compare
EX31_RS14190 -4.0 -13.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS15880 -4.0 -10.9 nitrogen regulation protein NR(I) compare
EX31_RS15005 -4.0 -19.0 dihydroxy-acid dehydratase compare
EX31_RS13445 -4.0 -18.7 argininosuccinate synthase compare
EX31_RS03945 -3.9 -25.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS12515 -3.9 -28.2 glutamate synthase large subunit compare
EX31_RS03830 -3.9 -20.7 carbamoyl-phosphate synthase large subunit compare
EX31_RS20175 -3.9 -11.4 cysteine synthase A compare
EX31_RS09975 -3.9 -9.3 tryptophan synthase subunit beta compare
EX31_RS20980 -3.9 -8.3 glutamate 5-kinase compare
EX31_RS18540 -3.9 -4.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS05785 -3.8 -5.2 superoxide dismutase [Mn] compare
EX31_RS22245 -3.8 -4.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS09980 -3.8 -8.7 tryptophan synthase subunit alpha compare
EX31_RS03935 -3.8 -13.8 threonine synthase compare
EX31_RS13275 -3.7 -14.6 diaminopimelate decarboxylase compare
EX31_RS09965 -3.6 -8.7 anthranilate phosphoribosyltransferase compare
EX31_RS20975 -3.6 -9.6 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS06055 -3.6 -4.3 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS09970 -3.6 -9.5 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS20495 -3.6 -13.1 outer membrane protein assembly factor BamB compare
EX31_RS24385 -3.6 -5.9 dihydroorotase compare
EX31_RS11465 -3.6 -8.9 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS23440 -3.5 -3.4 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS03835 -3.5 -12.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS11455 -3.5 -6.3 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS16860 -3.5 -21.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS15875 -3.5 -15.9 nitrogen regulation protein NR(II) compare
EX31_RS09855 -3.5 -5.7 orotidine-5'-phosphate decarboxylase compare
EX31_RS14200 -3.5 -15.4 phosphoenolpyruvate carboxylase compare
EX31_RS11845 -3.5 -1.7 repressor LexA compare
EX31_RS13160 -3.4 -13.9 amino-acid N-acetyltransferase compare
EX31_RS11450 -3.4 -8.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS03680 -3.4 -15.0 2-isopropylmalate synthase compare
EX31_RS11445 -3.4 -10.0 histidinol-phosphate transaminase compare
EX31_RS07585 -3.3 -10.0 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS02690 -3.2 -8.0 pyrroline-5-carboxylate reductase compare
EX31_RS22695 -3.2 -10.4 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS11735 -3.2 -12.3 homoserine O-succinyltransferase compare
EX31_RS19570 -3.2 -15.5 amidophosphoribosyltransferase compare
EX31_RS22250 -3.2 -7.2 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS18095 -3.1 -8.0 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS03695 -3.1 -6.5 3-isopropylmalate dehydratase small subunit compare
EX31_RS07870 -3.1 -8.9 adenylyl-sulfate kinase compare
EX31_RS11440 -3.1 -8.8 histidinol dehydrogenase compare
EX31_RS14500 -3.1 -10.6 orotate phosphoribosyltransferase compare
EX31_RS22620 -3.1 -7.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS07590 -3.1 -3.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS09955 -3.0 -9.8 anthranilate synthase component 1 compare
EX31_RS18530 -3.0 -13.3 leucine-responsive transcriptional regulator Lrp compare
EX31_RS08535 -2.9 -4.0 30S ribosome-binding factor RbfA compare
EX31_RS22750 -2.9 -6.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS16855 -2.9 -14.7 phosphoribosylamine--glycine ligase compare
EX31_RS13045 -2.9 -16.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS15870 -2.9 -4.8 glutamate--ammonia ligase compare
EX31_RS12825 -2.9 -8.0 ornithine carbamoyltransferase compare
EX31_RS21895 -2.8 -18.7 phosphoribosylformylglycinamidine synthase compare
EX31_RS14215 -2.8 -16.5 cystathionine gamma-synthase compare
EX31_RS23485 -2.8 -3.3 colicin uptake protein TolR compare
EX31_RS09960 -2.8 -5.8 glutamine amidotransferase compare
EX31_RS14205 -2.7 -10.1 methylenetetrahydrofolate reductase compare
EX31_RS09895 -2.7 -4.4 type I DNA topoisomerase compare
EX31_RS07895 -2.7 -11.5 phosphoadenylyl-sulfate reductase compare
EX31_RS09890 -2.5 -12.8 HTH-type transcriptional regulator CysB compare
EX31_RS14335 -2.5 -2.4 serine O-acetyltransferase compare
EX31_RS03250 -2.5 -10.5 RNA polymerase-binding protein DksA compare
EX31_RS12785 -2.5 -11.1 aspartate carbamoyltransferase compare
EX31_RS20450 -2.5 -8.2 IMP dehydrogenase compare
EX31_RS14340 -2.5 -2.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS08745 -2.4 -2.7 50S ribosomal protein L9 compare
EX31_RS25370 -2.4 -12.3 HTH-type transcriptional regulator MetR compare
EX31_RS18525 -2.3 -4.7 DNA translocase FtsK compare
EX31_RS14990 -2.3 -11.9 acetolactate synthase 2 catalytic subunit compare
EX31_RS15010 -2.2 -10.1 threonine ammonia-lyase, biosynthetic compare
EX31_RS07560 -2.2 -15.4 ATP-dependent chaperone ClpB compare
EX31_RS07900 -2.1 -12.5 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS08720 -2.1 -12.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS07905 -2.1 -13.8 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS23495 -2.0 -8.0 Tol-Pal system protein TolB compare
EX31_RS16845 -2.0 -4.2 DNA-binding protein HU-alpha compare
EX31_RS03480 -2.0 -4.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS07955 -1.9 -13.3 GTP diphosphokinase compare
EX31_RS07875 -1.9 -13.0 sulfate adenylyltransferase subunit CysN compare
EX31_RS08150 -1.9 -11.6 inorganic triphosphatase compare
EX31_RS22430 -1.8 -2.3 hemolysin expression modulator Hha compare
EX31_RS07880 -1.8 -12.2 sulfate adenylyltransferase subunit CysD compare
EX31_RS00450 -1.8 -2.8 methionine-R-sulfoxide reductase compare
EX31_RS06060 -1.7 -4.8 phosphate ABC transporter permease PstA compare
EX31_RS23500 -1.7 -4.9 peptidoglycan-associated lipoprotein Pal compare
EX31_RS22740 -1.7 -8.7 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS06150 -1.7 -12.1 transcriptional regulator AsnC compare
EX31_RS15000 -1.7 -10.7 branched-chain amino acid transaminase compare
EX31_RS14310 -1.7 -4.8 6-phosphofructokinase compare
EX31_RS24395 -1.6 -4.9 ribonuclease E compare
EX31_RS07785 -1.6 -1.8 carbon storage regulator CsrA compare
EX31_RS23480 -1.6 -4.4 Tol-Pal system protein TolQ compare
EX31_RS04105 -1.6 -2.3 helix-turn-helix domain-containing protein compare
EX31_RS25375 -1.5 -1.8 ilv operon leader peptide compare
EX31_RS12875 -1.4 -2.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS26000 -1.4 -2.5 GntR family transcriptional regulator compare
EX31_RS25125 -1.4 -3.0 thr operon leader peptide compare
EX31_RS03400 -1.4 -5.3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS04925 -1.4 -3.2 Fe-S biogenesis protein NfuA compare
EX31_RS06065 -1.3 -6.4 phosphate ABC transporter permease PstC compare
EX31_RS23880 -1.3 -2.7 DUF1471 domain-containing protein compare
EX31_RS06070 -1.3 -6.3 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS22145 -1.3 -1.8 phosphatidylglycerophosphatase A compare
EX31_RS10030 -1.3 -1.7 YciY family protein compare
EX31_RS03790 -1.3 -1.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS19395 -1.2 -2.6 NADH-quinone oxidoreductase subunit J compare
EX31_RS20735 -1.2 -3.4 exodeoxyribonuclease V subunit beta compare
EX31_RS20220 -1.2 -4.7 sulfate/thiosulfate ABC transporter permease CysT compare
EX31_RS03035 -1.2 -5.0 LysE family transporter compare
EX31_RS20210 -1.2 -4.9 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
EX31_RS19655 -1.2 -4.5 beta-ketoacyl-ACP synthase I compare
EX31_RS03775 -1.2 -3.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS20655 -1.2 -2.5 hypothetical protein compare
EX31_RS11825 -1.2 -3.2 chorismate lyase compare
EX31_RS06620 -1.2 -3.2 electron transport complex subunit RsxA compare
EX31_RS07380 -1.1 -1.9 redox-regulated ATPase YchF compare
EX31_RS16645 -1.1 -1.1 DUF1471 domain-containing protein compare
EX31_RS20215 -1.1 -6.1 sulfate/thiosulfate ABC transporter permease CysW compare
EX31_RS02470 -1.1 -3.4 alpha/beta fold hydrolase compare
EX31_RS21750 -1.1 -4.2 RnfH family protein compare
EX31_RS00170 -1.0 -1.5 DUF1471 domain-containing protein compare
EX31_RS19600 -1.0 -5.1 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS02525 -1.0 -4.8 ABC transporter permease compare
EX31_RS24715 -1.0 -5.4 L-serine ammonia-lyase compare
EX31_RS02665 -1.0 -4.5 glutathione synthase compare
EX31_RS06140 -1.0 -6.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS18255 -1.0 -2.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS07470 -1.0 -1.6 hypothetical protein compare
EX31_RS22320 -1.0 -5.8 ammonium transporter AmtB compare
EX31_RS20265 -0.9 -1.7 YaiI/YqxD family protein compare
EX31_RS11675 -0.9 -1.8 Holliday junction branch migration protein RuvA compare
EX31_RS06550 -0.9 -1.8 two-component system response regulator NarL compare
EX31_RS03900 -0.9 -3.2 molecular chaperone DnaK compare
EX31_RS18325 -0.9 -1.0 baseplate assembly protein compare
EX31_RS13870 -0.9 -1.4 pyruvate kinase PykF compare
EX31_RS17615 -0.9 -1.9 hypothetical protein compare
EX31_RS08130 -0.9 -1.3 accessory factor UbiK family protein compare
EX31_RS26005 -0.9 -2.4 transposase compare
EX31_RS19320 -0.9 -2.7 nicotinamide mononucleotide deamidase-related protein YfaY compare
EX31_RS09650 -0.9 -1.1 GrxA family glutaredoxin compare
EX31_RS24880 -0.9 -7.7 carboxy terminal-processing peptidase compare
EX31_RS10115 -0.9 -5.2 formyltetrahydrofolate deformylase compare
EX31_RS23885 -0.9 -1.5 DUF1471 domain-containing protein compare
EX31_RS07595 -0.9 -4.0 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS14995 -0.8 -5.0 acetolactate synthase 2 small subunit compare
EX31_RS19390 -0.8 -2.4 NADH-quinone oxidoreductase subunit NuoK compare
EX31_RS15015 -0.8 -3.3 HTH-type transcriptional activator IlvY compare
EX31_RS08545 -0.8 -2.5 transcription termination/antitermination protein NusA compare
EX31_RS19480 -0.8 -4.0 acetate kinase compare
EX31_RS10430 -0.8 -2.6 5-oxoprolinase subunit PxpB compare
EX31_RS09730 -0.8 -3.2 sugar ABC transporter substrate-binding protein compare
EX31_RS01695 -0.8 -1.0 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS17565 -0.8 -3.0 GGDEF domain-containing protein compare
EX31_RS16515 -0.8 -2.9 GGDEF domain-containing protein compare
EX31_RS00760 -0.8 -2.1 glutathione S-transferase compare
EX31_RS07175 -0.8 -4.1 FAD:protein FMN transferase ApbE compare
EX31_RS18785 -0.8 -2.7 DUF2384 domain-containing protein compare
EX31_RS07750 -0.8 -5.1 glutamate--cysteine ligase compare
EX31_RS11435 -0.8 -2.6 ATP phosphoribosyltransferase compare
EX31_RS15975 -0.8 -1.4 peptide deformylase compare
EX31_RS17465 -0.8 -1.6 hypothetical protein compare
EX31_RS06440 -0.8 -1.9 heat shock protein HslJ compare
EX31_RS04325 -0.8 -0.7 hypothetical protein compare
EX31_RS03085 -0.8 -2.6 hypothetical protein compare
EX31_RS03710 -0.7 -1.1 glucose uptake inhibitor SgrT compare
EX31_RS20530 -0.7 -3.5 nucleoside-diphosphate kinase compare
EX31_RS04710 -0.7 -2.4 adenine-specific DNA-methyltransferase compare
EX31_RS24895 -0.7 -3.2 DNA-binding transcriptional regulator KdgR compare
EX31_RS06000 -0.7 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS24220 -0.7 -1.3 hypothetical protein compare
EX31_RS09290 -0.7 -1.3 hypothetical protein compare
EX31_RS01255 -0.7 -1.9 Crp/Fnr family transcriptional regulator compare
EX31_RS11200 -0.7 -1.7 alpha/beta fold hydrolase compare
EX31_RS02390 -0.7 -1.5 steroid Delta-isomerase compare
EX31_RS09760 -0.7 -2.0 D-xylose ABC transporter substrate-binding protein compare
EX31_RS21190 -0.7 -2.0 ribonuclease HI compare
EX31_RS24685 -0.7 -1.5 DUF986 domain-containing protein compare
EX31_RS14605 -0.7 -2.2 Sec-independent protein translocase subunit TatB compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source L-Serine across organisms