Experiment set1IT057 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Sodium nitrate 100 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS24385 +1.1 3.5 GNAT family N-acetyltransferase compare
CA265_RS00335 +0.9 2.4 hypothetical protein compare
CA265_RS07755 +0.8 2.3 hypothetical protein compare
CA265_RS11610 +0.7 1.0 RNA-binding protein S4 compare
CA265_RS05940 +0.7 2.6 hypothetical protein compare
CA265_RS12780 +0.6 1.6 hypothetical protein compare
CA265_RS21835 +0.6 1.6 hypothetical protein compare
CA265_RS14825 +0.6 1.6 outer membrane protein assembly factor BamD compare
CA265_RS23820 +0.6 1.1 hypothetical protein compare
CA265_RS09555 +0.6 2.7 phage envelope protein compare
CA265_RS19465 +0.6 1.9 protein tyrosine phosphatase compare
CA265_RS14640 +0.6 1.4 UDP-glucose 4-epimerase compare
CA265_RS19615 +0.5 3.2 metal-dependent hydrolase compare
CA265_RS20880 +0.5 3.3 hypothetical protein compare
CA265_RS19535 +0.5 3.5 hypothetical protein compare
CA265_RS16615 +0.5 1.6 hypothetical protein compare
CA265_RS11030 +0.5 1.0 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS19640 +0.5 2.0 hypothetical protein compare
CA265_RS25335 +0.5 1.1 hypothetical protein compare
CA265_RS22310 +0.5 2.1 superoxide dismutase compare
CA265_RS19785 +0.5 2.0 hypothetical protein compare
CA265_RS21365 +0.4 1.2 thiol reductase thioredoxin compare
CA265_RS11935 +0.4 2.4 hypothetical protein compare
CA265_RS09705 +0.4 1.6 copper oxidase compare
CA265_RS03280 +0.4 2.0 hypothetical protein compare
CA265_RS06505 +0.4 1.6 hypothetical protein compare
CA265_RS18275 +0.4 1.5 pyrophosphatase compare
CA265_RS22385 +0.4 2.0 SAM-dependent methyltransferase compare
CA265_RS22010 +0.4 0.9 hypothetical protein compare
CA265_RS19030 +0.4 2.6 hypothetical protein compare
CA265_RS19970 +0.4 2.2 cyclic nucleotide-binding protein compare
CA265_RS21580 +0.4 1.5 QacE family quaternary ammonium compound efflux SMR transporter compare
CA265_RS02655 +0.4 2.1 hypothetical protein compare
CA265_RS02425 +0.4 1.9 GTP cyclohydrolase compare
CA265_RS17940 +0.4 1.6 hypothetical protein compare
CA265_RS08935 +0.4 1.8 (2Fe-2S)-binding protein compare
CA265_RS09885 +0.4 2.2 hypothetical protein compare
CA265_RS05395 +0.4 1.4 heme oxygenase compare
CA265_RS22370 +0.4 1.4 hypothetical protein compare
CA265_RS20610 +0.4 1.2 hypothetical protein compare
CA265_RS19545 +0.4 2.1 protease compare
CA265_RS10000 +0.4 1.2 nitrite reductase small subunit compare
CA265_RS23455 +0.4 1.8 hypothetical protein compare
CA265_RS15870 +0.4 1.6 hypothetical protein compare
CA265_RS18200 +0.4 1.1 DUF4440 domain-containing protein compare
CA265_RS17125 +0.4 1.3 DNA-binding response regulator compare
CA265_RS20395 +0.4 1.1 hypothetical protein compare
CA265_RS18855 +0.4 1.7 hypothetical protein compare
CA265_RS00610 +0.4 2.0 hypothetical protein compare
CA265_RS15820 +0.4 1.8 hypothetical protein compare
CA265_RS20215 +0.4 0.9 transcriptional regulator compare
CA265_RS12825 +0.4 1.7 hypothetical protein compare
CA265_RS10040 +0.4 1.0 hypothetical protein compare
CA265_RS15030 +0.4 2.1 PIN domain nuclease compare
CA265_RS24625 +0.4 2.6 LacI family transcriptional regulator compare
CA265_RS22075 +0.4 2.1 hypothetical protein compare
CA265_RS15200 +0.4 1.2 hypothetical protein compare
CA265_RS14645 +0.4 1.9 hypothetical protein compare
CA265_RS10840 +0.4 2.3 TIGR02453 family protein compare
CA265_RS23830 +0.3 1.8 protein tyrosine phosphatase compare
CA265_RS15085 +0.3 2.3 hypothetical protein compare
CA265_RS07330 +0.3 1.2 hypothetical protein compare
CA265_RS01950 +0.3 1.2 hypothetical protein compare
CA265_RS15280 +0.3 2.3 glycine C-acetyltransferase compare
CA265_RS21435 +0.3 1.4 hypothetical protein compare
CA265_RS09425 +0.3 1.0 hypothetical protein compare
CA265_RS09725 +0.3 3.1 tolB protein precursor compare
CA265_RS17865 +0.3 2.4 hypothetical protein compare
CA265_RS12960 +0.3 1.5 DUF4440 domain-containing protein compare
CA265_RS04000 +0.3 0.9 hypothetical protein compare
CA265_RS19345 +0.3 2.6 hypothetical protein compare
CA265_RS11570 +0.3 1.7 hypothetical protein compare
CA265_RS11515 +0.3 2.0 hypothetical protein compare
CA265_RS07515 +0.3 2.2 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS20925 +0.3 1.8 hypothetical protein compare
CA265_RS14440 +0.3 1.0 transcriptional regulator compare
CA265_RS23950 +0.3 1.0 ribonuclease HII compare
CA265_RS02675 +0.3 1.4 hypothetical protein compare
CA265_RS06585 +0.3 1.9 hypothetical protein compare
CA265_RS02795 +0.3 0.9 hypothetical protein compare
CA265_RS23675 +0.3 0.6 hypothetical protein compare
CA265_RS06705 +0.3 1.8 hypothetical protein compare
CA265_RS12045 +0.3 1.7 hypothetical protein compare
CA265_RS24110 +0.3 2.4 hypothetical protein compare
CA265_RS24360 +0.3 1.2 ATPase compare
CA265_RS13380 +0.3 0.8 hypothetical protein compare
CA265_RS19165 +0.3 1.0 serine hydroxymethyltransferase compare
CA265_RS05515 +0.3 1.2 hypothetical protein compare
CA265_RS03450 +0.3 1.6 hypothetical protein compare
CA265_RS04510 +0.3 1.9 hypothetical protein compare
CA265_RS10400 +0.3 2.0 histone H1 compare
CA265_RS07295 +0.3 1.9 hypothetical protein compare
CA265_RS04800 +0.3 2.2 AI-2E family transporter compare
CA265_RS09245 +0.3 2.1 ABC transporter substrate-binding protein compare
CA265_RS20695 +0.3 0.8 hypothetical protein compare
CA265_RS23665 +0.3 1.6 hypothetical protein compare
CA265_RS23235 +0.3 1.1 transcriptional regulator compare
CA265_RS05735 +0.3 1.1 hypothetical protein compare
CA265_RS12745 +0.3 1.4 NUDIX hydrolase compare
CA265_RS03995 +0.3 2.4 hypothetical protein compare
CA265_RS23020 +0.3 2.2 hypothetical protein compare
CA265_RS09165 +0.3 1.8 AAA family ATPase compare
CA265_RS21980 +0.3 2.3 alpha-L-fucosidase compare
CA265_RS01770 +0.3 1.3 hypothetical protein compare
CA265_RS00415 +0.3 1.5 cupin compare
CA265_RS12035 +0.3 2.1 hypothetical protein compare
CA265_RS21525 +0.3 1.1 hypothetical protein compare
CA265_RS19740 +0.3 1.3 gliding motility lipoprotein GldD compare
CA265_RS16470 +0.3 1.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CA265_RS18525 +0.3 1.8 four helix bundle protein compare
CA265_RS21225 +0.3 2.3 hypothetical protein compare
CA265_RS21800 +0.3 2.0 hypothetical protein compare
CA265_RS24490 +0.3 1.5 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS07735 +0.3 0.5 transcriptional regulator compare
CA265_RS19820 +0.3 1.5 LacI family transcriptional regulator compare
CA265_RS10490 +0.3 1.5 PhnA protein compare
CA265_RS25400 +0.3 1.9 fatty acid desaturase compare
CA265_RS00940 +0.3 1.2 hypothetical protein compare
CA265_RS18865 +0.3 1.2 hypothetical protein compare
CA265_RS07230 +0.3 0.6 hypothetical protein compare
CA265_RS18420 +0.3 1.4 hypothetical protein compare
CA265_RS18945 +0.3 1.6 LacI family transcriptional regulator compare
CA265_RS21845 +0.3 1.3 transcriptional regulator compare
CA265_RS17730 +0.3 1.8 hypothetical protein compare
CA265_RS08880 +0.3 2.2 chromate transporter compare
CA265_RS00875 +0.3 1.5 alkaline phosphatase compare
CA265_RS19620 +0.3 1.0 hypothetical protein compare
CA265_RS17420 +0.3 1.6 glyoxalase compare
CA265_RS15035 +0.3 1.0 prevent-host-death protein compare
CA265_RS18455 +0.3 1.3 nucleotidyltransferase compare
CA265_RS17600 +0.3 1.8 hypothetical protein compare
CA265_RS06380 +0.3 2.3 TIGR02757 family protein compare
CA265_RS24605 +0.3 0.3 hypothetical protein compare
CA265_RS11125 +0.3 1.4 hypothetical protein compare
CA265_RS21445 +0.3 1.7 exodeoxyribonuclease III compare
CA265_RS25030 +0.3 0.9 hypothetical protein compare
CA265_RS03235 +0.3 1.4 hypothetical protein compare
CA265_RS19855 +0.3 1.9 D-galacturonate transporter ExuT (from data) compare
CA265_RS21420 +0.3 1.5 hypothetical protein compare
CA265_RS20220 +0.3 1.8 hypothetical protein compare
CA265_RS25150 +0.3 1.4 hypothetical protein compare
CA265_RS03180 +0.3 1.1 hypothetical protein compare
CA265_RS13940 +0.3 1.4 hypothetical protein compare
CA265_RS10190 +0.3 2.0 esterase compare
CA265_RS21760 +0.3 1.3 hypothetical protein compare
CA265_RS01370 +0.3 1.0 cbb3-type cytochrome oxidase assembly protein CcoS compare
CA265_RS10430 +0.3 1.7 hypothetical protein compare
CA265_RS20440 +0.3 1.5 hypothetical protein compare
CA265_RS03665 +0.3 0.9 hypothetical protein compare
CA265_RS22355 +0.3 1.3 translation initiation factor compare
CA265_RS19450 +0.3 1.8 hypothetical protein compare
CA265_RS21395 +0.3 0.6 hypothetical protein compare
CA265_RS12850 +0.3 1.1 3-oxoacyl-ACP synthase compare
CA265_RS14685 +0.3 1.7 hypothetical protein compare
CA265_RS16950 +0.3 1.5 hypothetical protein compare
CA265_RS11905 +0.3 1.0 hypothetical protein compare
CA265_RS03530 +0.3 1.0 hypothetical protein compare
CA265_RS18425 +0.3 1.3 sprT domain-containing protein compare
CA265_RS18415 +0.3 1.4 hypothetical protein compare
CA265_RS19500 +0.3 1.6 methyltransferase type 11 compare
CA265_RS00160 +0.3 1.4 hypothetical protein compare
CA265_RS09645 +0.3 1.3 hypothetical protein compare
CA265_RS22180 +0.3 1.3 hypothetical protein compare
CA265_RS11920 +0.3 0.8 histone H1 compare
CA265_RS19595 +0.3 1.5 GxxExxY protein compare
CA265_RS19600 +0.3 1.7 hypothetical protein compare
CA265_RS17465 +0.3 1.8 hypothetical protein compare
CA265_RS20785 +0.3 1.0 hypothetical protein compare
CA265_RS25020 +0.3 1.4 NADH:ubiquinone oxidoreductase compare
CA265_RS22530 +0.3 1.6 RDD family protein compare
CA265_RS14330 +0.3 1.6 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase compare
CA265_RS07445 +0.3 1.6 MarR family transcriptional regulator compare
CA265_RS19650 +0.3 1.2 DNA-3-methyladenine glycosylase compare
CA265_RS10150 +0.3 1.0 cysteine synthase B compare
CA265_RS02460 +0.3 0.7 tRNA-Phe compare
CA265_RS22545 +0.3 1.4 lysophospholipase compare
CA265_RS03455 +0.3 1.8 cysteine methyltransferase compare
CA265_RS22860 +0.3 1.4 hypothetical protein compare
CA265_RS25460 +0.3 1.7 methylmalonyl-CoA mutase compare
CA265_RS20975 +0.3 0.9 hypothetical protein compare
CA265_RS05075 +0.3 0.6 hypothetical protein compare
CA265_RS16205 +0.3 1.3 transcriptional regulator compare
CA265_RS12585 +0.3 1.7 hypothetical protein compare
CA265_RS15445 +0.3 1.8 hypothetical protein compare
CA265_RS06365 +0.3 1.9 hypothetical protein compare
CA265_RS08395 +0.3 1.6 AraC family transcriptional regulator compare
CA265_RS15175 +0.3 1.1 thioredoxin-dependent thiol peroxidase compare
CA265_RS17575 +0.3 1.9 acyl-CoA dehydrogenase compare
CA265_RS04175 +0.3 1.3 phosphonate ABC transporter ATP-binding protein compare
CA265_RS24700 +0.3 1.2 hypothetical protein compare
CA265_RS05765 +0.3 1.2 hypothetical protein compare
CA265_RS14785 +0.3 1.6 pyrroloquinoline quinone biosynthesis protein PqqB compare
CA265_RS20315 +0.3 2.1 hypothetical protein compare
CA265_RS23485 +0.3 1.1 hypothetical protein compare
CA265_RS18570 +0.3 0.8 hypothetical protein compare
CA265_RS11855 +0.3 0.8 hypothetical protein compare
CA265_RS13835 +0.3 1.6 hypothetical protein compare
CA265_RS07760 +0.3 1.5 hypothetical protein compare
CA265_RS23870 +0.3 1.3 hypothetical protein compare
CA265_RS04315 +0.2 1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in stress experiments

For stress Sodium nitrate across organisms