Experiment set1IT057 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 10 generations

200 most important genes:

  gene name fitness t score description  
MMP_RS06700 -10.6 -10.3 hypothetical protein compare
MMP_RS01985 -8.8 -6.5 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS04090 -8.6 -5.3 hypothetical protein compare
MMP_RS02135 -8.1 -7.5 DUF5612 domain-containing protein compare
MMP_RS06895 -7.8 -3.8 selenocysteine-specific translation elongation factor compare
MMP_RS02145 -7.7 -10.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS08650 -7.0 -6.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS07630 -6.8 -3.2 ATP-binding cassette domain-containing protein compare
MMP_RS01175 -6.8 -5.9 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03025 -6.8 -10.5 molybdenum cofactor guanylyltransferase compare
MMP_RS05250 -6.8 -3.7 NFYB/HAP3 family transcription factor subunit compare
MMP_RS08720 -6.6 -3.7 4Fe-4S binding protein compare
MMP_RS08745 -6.4 -12.9 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS03960 -6.3 -1.8 hypothetical protein compare
MMP_RS03315 -6.3 -3.0 ferrous iron transport protein A compare
MMP_RS06730 -6.3 -4.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS00305 -6.2 -3.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS08590 -6.0 -8.1 flagellin compare
MMP_RS07635 -6.0 -12.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS08460 -5.8 -5.0 proteasome-activating nucleotidase compare
MMP_RS00300 -5.8 -1.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01610 -5.8 -5.0 hypothetical protein compare
MMP_RS01220 -5.7 -13.9 hypothetical protein compare
MMP_RS04775 -5.6 -6.7 adenosylhomocysteinase compare
MMP_RS06295 -5.6 -11.6 methanogenesis marker 14 protein compare
MMP_RS01020 -5.6 -2.2 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS07390 -5.4 -5.3 cell division protein FtsZ compare
MMP_RS06625 -5.4 -3.8 DNA primase compare
MMP_RS08635 -5.4 -3.6 UbiA family prenyltransferase compare
MMP_RS06270 -5.4 -8.9 TIGR00300 family protein compare
MMP_RS00515 -5.3 -2.1 DUF655 domain-containing protein compare
MMP_RS07005 -5.3 -1.5 4Fe-4S binding protein compare
MMP_RS06355 -5.3 -4.3 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01385 -5.2 -1.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06285 -5.2 -4.9 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04685 -5.2 -5.1 DUF126 domain-containing protein compare
MMP_RS07380 -5.2 -4.7 transcription elongation factor Spt5 compare
MMP_RS00685 -5.2 -8.2 2-phospho-L-lactate guanylyltransferase compare
MMP_RS05345 -5.1 -11.6 hypothetical protein compare
MMP_RS00335 -5.1 -6.5 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS08715 -5.0 -3.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS02280 -4.9 -1.9 DUF211 domain-containing protein compare
MMP_RS02195 -4.9 -6.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06315 -4.9 -1.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS05845 -4.8 -3.4 tRNA-intron lyase compare
MMP_RS04585 -4.8 -12.6 AIR synthase related protein compare
MMP_RS06680 -4.8 -21.1 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS07435 -4.8 -3.8 GMP synthase subunit A compare
MMP_RS08790 -4.7 -4.6 translation initiation factor IF-2 subunit alpha compare
MMP_RS08600 -4.6 -4.6 flagellar protein D compare
MMP_RS03400 -4.6 -5.2 archease compare
MMP_RS06685 -4.6 -16.0 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06350 -4.6 -9.4 HesA/MoeB/ThiF family protein compare
MMP_RS04780 -4.5 -5.9 ribonuclease P compare
MMP_RS03435 -4.5 -3.3 ketol-acid reductoisomerase compare
MMP_RS09020 -4.5 -3.2 hypothetical protein compare
MMP_RS08300 -4.5 -2.9 metal-sulfur cluster assembly factor compare
MMP_RS03015 -4.4 -14.7 GTP 3' 8-cyclase MoaA compare
MMP_RS05515 -4.3 -14.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS04890 -4.3 -1.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS03390 -4.3 -8.3 malate dehydrogenase compare
MMP_RS06400 -4.3 -3.6 4Fe-4S binding protein compare
MMP_RS01755 -4.3 -2.7 DUF2097 domain-containing protein compare
MMP_RS03445 -4.2 -2.3 methanogenesis marker 17 protein compare
MMP_RS06230 -4.2 -4.0 helix-turn-helix domain-containing protein compare
MMP_RS06630 -4.2 -2.3 UPF0058 family protein compare
MMP_RS00695 -4.1 -2.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01225 -4.1 -8.7 DUF5379 domain-containing protein compare
MMP_RS00750 -4.1 -3.7 fumarate hydratase compare
MMP_RS02800 -4.1 -6.1 nucleotidyltransferase domain-containing protein compare
MMP_RS08840 -4.1 -11.4 class I SAM-dependent methyltransferase compare
MMP_RS03475 -4.1 -1.6 hypothetical protein compare
MMP_RS06020 -4.0 -5.8 archaeoflavoprotein AfpA compare
MMP_RS03580 -4.0 -4.8 signal recognition particle-docking protein FtsY compare
MMP_RS03035 -4.0 -6.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08605 -4.0 -7.7 flagellar protein E compare
MMP_RS01380 -3.9 -7.3 PHP domain-containing protein compare
MMP_RS01500 -3.9 -4.2 CBS domain-containing protein compare
MMP_RS06885 -3.9 -4.2 50S ribosome-binding GTPase compare
MMP_RS02240 -3.8 -5.2 methanogenesis marker 7 protein compare
MMP_RS07445 -3.8 -8.8 helix-turn-helix domain-containing protein compare
MMP_RS07580 -3.8 -4.2 DUF356 domain-containing protein compare
MMP_RS01795 -3.7 -3.7 methanogenesis marker 6 protein compare
MMP_RS08210 -3.6 -4.9 phosphatidylglycerophosphatase A compare
MMP_RS07605 -3.6 -7.5 diadenylate cyclase compare
MMP_RS05920 -3.6 -1.4 50S ribosomal protein L37e compare
MMP_RS06130 -3.6 -4.4 peptidylprolyl isomerase compare
MMP_RS07755 -3.6 -2.5 DUF555 domain-containing protein compare
MMP_RS01800 -3.6 -5.2 TIGR00303 family protein compare
MMP_RS00110 -3.6 -3.4 hypothetical protein compare
MMP_RS08595 -3.6 -2.4 flagellar protein C compare
MMP_RS00985 -3.5 -10.0 CDC48 family AAA ATPase compare
MMP_RS04605 -3.5 -5.5 cobalt ECF transporter T component CbiQ compare
MMP_RS08435 -3.5 -5.9 Era-like GTP-binding protein compare
MMP_RS01700 -3.5 -1.8 dihydroxy-acid dehydratase compare
MMP_RS06120 -3.5 -4.4 UPF0147 family protein compare
MMP_RS01265 -3.5 -4.0 hypothetical protein compare
MMP_RS07600 -3.4 -5.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS03205 -3.4 -3.0 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS03155 -3.4 -10.9 precorrin-6A reductase compare
MMP_RS06105 -3.3 -14.6 hydrogenase maturation peptidase HycI compare
MMP_RS01325 -3.3 -3.7 dihydroneopterin aldolase family protein compare
MMP_RS03600 -3.3 -3.7 triose-phosphate isomerase compare
MMP_RS07525 -3.3 -6.5 4Fe-4S binding protein compare
MMP_RS03305 -3.2 -13.3 winged helix-turn-helix domain-containing protein compare
MMP_RS06475 -3.2 -9.1 FAD-dependent oxidoreductase compare
MMP_RS08440 -3.1 -6.5 cell division protein SepF compare
MMP_RS07200 -3.1 -9.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07735 -3.1 -2.0 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07845 -3.1 -2.8 LL-diaminopimelate aminotransferase compare
MMP_RS07625 -3.1 -5.4 cobalt ECF transporter T component CbiQ compare
MMP_RS04710 -3.0 -3.7 hypothetical protein compare
MMP_RS02875 -3.0 -14.8 chorismate pyruvate-lyase family protein compare
MMP_RS00810 -3.0 -10.8 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS06340 -3.0 -8.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07955 -2.9 -3.4 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS06925 -2.9 -4.1 ribonuclease VapC4 compare
MMP_RS02345 -2.9 -3.8 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS04870 -2.8 -5.9 TIGR02253 family HAD-type hydrolase compare
MMP_RS03700 -2.8 -10.5 sodium:proton antiporter compare
MMP_RS07750 -2.8 -5.3 DUF357 domain-containing protein compare
MMP_RS05265 -2.8 -4.3 2-isopropylmalate synthase compare
MMP_RS01905 -2.8 -19.7 glycosyltransferase compare
MMP_RS06940 -2.8 -2.6 polyprenyl diphosphate synthase compare
MMP_RS08370 -2.7 -1.5 cation:proton antiporter subunit C compare
MMP_RS05545 -2.7 -10.9 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS08860 -2.7 -10.4 MinD/ParA family protein compare
MMP_RS08445 -2.7 -6.1 DUF2099 family protein compare
MMP_RS06715 -2.7 -18.3 cache domain-containing protein compare
MMP_RS07545 -2.7 -2.5 HTH domain-containing protein compare
MMP_RS05430 -2.7 -2.1 TIGR00288 family NYN domain-containing protein compare
MMP_RS01005 -2.6 -3.0 riboflavin synthase compare
MMP_RS01890 -2.6 -7.7 nucleotide sugar dehydrogenase compare
MMP_RS01830 -2.6 -2.6 tRNA-Val compare
MMP_RS06720 -2.6 -13.6 response regulator transcription factor compare
MMP_RS01900 -2.6 -18.1 hypothetical protein compare
MMP_RS00320 -2.6 -2.9 class I SAM-dependent methyltransferase compare
MMP_RS01445 -2.5 -10.4 hypothetical protein compare
MMP_RS07685 -2.5 -13.1 TIGR01212 family radical SAM protein compare
MMP_RS06980 -2.5 -12.0 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS03640 -2.5 -4.5 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05925 -2.5 -5.2 small nuclear ribonucleoprotein compare
MMP_RS01925 -2.5 -12.7 DUF1616 domain-containing protein compare
MMP_RS01335 -2.5 -4.9 prefoldin subunit beta compare
MMP_RS07385 -2.4 -2.0 protein translocase SEC61 complex subunit gamma compare
MMP_RS05640 -2.4 -10.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS02165 -2.4 -10.8 tRNA-dihydrouridine synthase compare
MMP_RS01975 -2.4 -18.2 hypothetical protein compare
MMP_RS02885 -2.4 -17.6 molybdopterin biosynthesis protein compare
MMP_RS03145 -2.4 -10.9 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS05540 -2.3 -2.5 hypothetical protein compare
MMP_RS06215 -2.3 -5.9 30S ribosomal protein S6e compare
MMP_RS01725 -2.3 -6.3 class I SAM-dependent methyltransferase family protein compare
MMP_RS06110 -2.3 -4.1 ATP-dependent protease LonB compare
MMP_RS08320 -2.2 -8.2 molybdopterin molybdotransferase MoeA compare
MMP_RS02355 -2.2 -5.4 30S ribosomal protein S27ae compare
MMP_RS03140 -2.2 -14.6 hypothetical protein compare
MMP_RS06670 -2.2 -8.7 glucose-6-phosphate isomerase compare
MMP_RS06345 -2.2 -13.5 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS08165 -2.2 -1.9 phosphoglycerate dehydrogenase compare
MMP_RS07615 -2.2 -11.9 energy-coupling factor ABC transporter permease compare
MMP_RS07350 -2.2 -1.9 preprotein translocase subunit Sec61beta compare
MMP_RS01885 -2.1 -13.9 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS04620 -2.1 -9.7 cobalt transporter CbiM compare
MMP_RS07075 -2.1 -8.3 phosphomannomutase/phosphoglucomutase compare
MMP_RS03110 -2.1 -7.0 glycosyltransferase family 2 protein compare
MMP_RS01880 -2.1 -10.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS01875 -2.1 -12.9 N-acetyltransferase compare
MMP_RS01895 -2.1 -16.0 flippase compare
MMP_RS05815 -2.0 -1.1 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS06200 -2.0 -12.3 M24 family metallopeptidase compare
MMP_RS05555 -2.0 -2.8 DUF4040 domain-containing protein compare
MMP_RS03095 -2.0 -10.1 diphthine synthase compare
MMP_RS05550 -2.0 -1.4 cation:proton antiporter compare
MMP_RS07425 -2.0 -6.3 GTP-binding protein compare
MMP_RS05525 -2.0 -10.7 calcium/sodium antiporter compare
MMP_RS02900 -2.0 -1.1 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01955 -2.0 -6.0 hypothetical protein compare
MMP_RS07090 -2.0 -11.6 tRNA (adenine-N1)-methyltransferase compare
MMP_RS01960 -2.0 -1.8 hypothetical protein compare
MMP_RS02130 -1.9 -3.1 zinc metalloprotease HtpX compare
MMP_RS08915 -1.9 -2.0 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS01970 -1.9 -14.9 TIGR04279 domain-containing protein compare
MMP_RS07730 -1.9 -3.4 pyruvate synthase subunit beta compare
MMP_RS05425 -1.9 -7.3 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01665 -1.9 -3.5 DUF2111 domain-containing protein compare
MMP_RS08645 -1.9 -8.4 UPF0179 family protein compare
MMP_RS01365 -1.9 -3.2 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS01915 -1.8 -14.9 DUF354 domain-containing protein compare
MMP_RS01910 -1.8 -11.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS04875 -1.8 -7.0 energy-converting hydrogenase B subunit P compare
MMP_RS01840 -1.8 -9.0 TIGR00289 family protein compare
MMP_RS06865 -1.7 -1.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06035 -1.7 -9.1 glycosyltransferase family 2 protein compare
MMP_RS04615 -1.7 -4.4 PDGLE domain-containing protein compare
MMP_RS05245 -1.7 -11.1 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS00620 -1.7 -6.8 4Fe-4S binding protein compare
MMP_RS06855 -1.7 -11.5 hypothetical protein compare
MMP_RS00895 -1.6 -4.5 hypothetical protein compare
MMP_RS05765 -1.6 -7.5 M42 family metallopeptidase compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Ethanol in Methanococcus maripaludis S2

For mixed community Ethanol across organisms