Experiment set1IT057 for Methanococcus maripaludis JJ

Compare to:

Formate pooled triplicate biofilm cells

200 most important genes:

  gene name fitness t score description  
MMJJ_RS03620 -4.9 -6.7 DUF2097 domain-containing protein compare
MMJJ_RS06625 -4.5 -2.9 pyruvate synthase subunit PorB compare
MMJJ_RS00570 -4.5 -3.1 ribonuclease P compare
MMJJ_RS01935 -4.4 -6.1 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS04155 -4.2 -8.5 hypothetical protein compare
MMJJ_RS07350 -4.2 -7.3 4Fe-4S binding protein compare
MMJJ_RS04970 -4.0 -3.1 DUF655 domain-containing protein compare
MMJJ_RS03670 -4.0 -7.0 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS07655 -4.0 -15.4 hypothetical protein compare
MMJJ_RS03865 -3.9 -2.0 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS08625 -3.9 -9.2 magnesium/cobalt transporter CorA compare
MMJJ_RS03840 -3.9 -4.5 DHH family phosphoesterase compare
MMJJ_RS05330 -3.8 -2.6 DNA polymerase II large subunit compare
MMJJ_RS07665 -3.8 -21.9 formate dehydrogenase subunit alpha compare
MMJJ_RS05650 -3.7 -3.6 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS07670 -3.7 -16.7 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS04200 -3.7 -8.6 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS00270 -3.7 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS00275 -3.7 -3.5 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS05610 -3.7 -3.5 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS03815 -3.7 -3.8 nascent polypeptide-associated complex protein compare
MMJJ_RS04800 -3.7 -8.9 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS01750 -3.6 -2.5 ferrous iron transport protein A compare
MMJJ_RS01200 -3.6 -2.5 PRC-barrel domain-containing protein compare
MMJJ_RS06860 -3.6 -5.9 hypothetical protein compare
MMJJ_RS03200 -3.6 -2.4 uroporphyrinogen-III synthase compare
MMJJ_RS02045 -3.6 -4.1 molybdenum cofactor guanylyltransferase compare
MMJJ_RS05575 -3.4 -5.1 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03760 -3.4 -5.0 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS00125 -3.4 -3.2 KEOPS complex subunit Cgi121 compare
MMJJ_RS06750 -3.4 -2.3 homoaconitase large subunit compare
MMJJ_RS06240 -3.4 -3.9 dihydropteroate synthase-like protein compare
MMJJ_RS05415 -3.4 -3.2 hypothetical protein compare
MMJJ_RS08095 -3.4 -5.9 cobyric acid synthase CobQ compare
MMJJ_RS03310 -3.4 -4.5 hypothetical protein compare
MMJJ_RS01360 -3.3 -2.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS05070 -3.3 -3.1 DNA primase catalytic subunit PriS compare
MMJJ_RS05620 -3.3 -5.7 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS08795 -3.2 -3.0 phosphoglucosamine mutase compare
MMJJ_RS06875 -3.2 -3.0 hypothetical protein compare
MMJJ_RS07660 -3.2 -13.2 carbonic anhydrase compare
MMJJ_RS02920 -3.2 -3.1 30S ribosomal protein S27ae compare
MMJJ_RS08855 -3.2 -5.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS03615 -3.1 -4.9 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06155 -3.1 -5.9 phosphatidylglycerophosphatase A compare
MMJJ_RS06510 -3.1 -3.0 LL-diaminopimelate aminotransferase compare
MMJJ_RS03580 -3.1 -4.5 TIGR00303 family protein compare
MMJJ_RS00355 -3.1 -2.1 ribonuclease P protein component 4 compare
MMJJ_RS06725 -3.1 -15.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS03170 -3.1 -8.5 DUF5612 domain-containing protein compare
MMJJ_RS01355 -3.1 -3.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS04485 -3.0 -9.6 riboflavin synthase compare
MMJJ_RS08005 -3.0 -16.4 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS06940 -3.0 -11.5 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS08320 -3.0 -4.5 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS07995 -2.9 -7.4 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS07945 -2.9 -3.3 4Fe-4S binding protein compare
MMJJ_RS08850 -2.9 -4.0 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS03125 -2.9 -6.1 GMC oxidoreductase compare
MMJJ_RS06250 -2.9 -3.2 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS04505 -2.9 -6.9 CDC48 family AAA ATPase compare
MMJJ_RS04110 -2.9 -7.8 hypothetical protein compare
MMJJ_RS06910 -2.9 -4.8 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06840 -2.8 -4.2 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06700 -2.8 -7.0 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS05930 -2.8 -2.6 cell division protein SepF compare
MMJJ_RS02200 -2.8 -11.2 chorismate pyruvate-lyase family protein compare
MMJJ_RS06855 -2.8 -2.4 DUF2104 domain-containing protein compare
MMJJ_RS02055 -2.8 -13.6 GTP 3',8-cyclase MoaA compare
MMJJ_RS08660 -2.8 -4.7 acetylornithine transaminase compare
MMJJ_RS08080 -2.8 -9.9 TIGR00300 family protein compare
MMJJ_RS04655 -2.8 -6.1 FAD-dependent oxidoreductase compare
MMJJ_RS06490 -2.7 -3.6 methanogenesis marker 2 protein compare
MMJJ_RS05590 -2.7 -2.3 homoserine dehydrogenase compare
MMJJ_RS08055 -2.7 -8.3 methanogenesis marker 14 protein compare
MMJJ_RS03150 -2.7 -7.1 2-phospho-L-lactate transferase compare
MMJJ_RS07725 -2.6 -6.9 DNA primase DnaG compare
MMJJ_RS06485 -2.6 -4.4 phosphoglycerate kinase compare
MMJJ_RS01865 -2.6 -5.6 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS05260 -2.6 -6.8 ATP-grasp domain-containing protein compare
MMJJ_RS07360 -2.6 -2.1 TIGR00269 family protein compare
MMJJ_RS08620 -2.6 -4.2 DUF373 family protein compare
MMJJ_RS01600 -2.6 -3.5 radical SAM protein compare
MMJJ_RS04475 -2.6 -5.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS04150 -2.6 -5.3 DUF5379 domain-containing protein compare
MMJJ_RS00550 -2.6 -9.3 AIR synthase-related protein compare
MMJJ_RS06180 -2.5 -4.3 tryptophan--tRNA ligase compare
MMJJ_RS05490 -2.5 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS07785 -2.5 -4.2 fumarate reductase subunit A compare
MMJJ_RS04730 -2.5 -4.0 tyrosine decarboxylase MfnA compare
MMJJ_RS03820 -2.5 -4.0 hydrogenase formation protein HypD compare
MMJJ_RS04995 -2.5 -6.9 Tfx family DNA-binding protein compare
MMJJ_RS03895 -2.5 -4.1 hydrogenase expression/formation protein HypE compare
MMJJ_RS04700 -2.5 -7.9 deoxyhypusine synthase compare
MMJJ_RS07585 -2.5 -12.1 DHH family phosphoesterase compare
MMJJ_RS03110 -2.5 -5.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS06915 -2.5 -12.3 helix-turn-helix domain-containing protein compare
MMJJ_RS04980 -2.5 -6.5 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS01870 -2.5 -2.2 methanogenesis marker 15 protein compare
MMJJ_RS01755 -2.5 -3.2 ferrous iron transport protein B compare
MMJJ_RS02090 -2.5 -5.2 tyramine--L-glutamate ligase compare
MMJJ_RS06225 -2.5 -3.0 adenosylmethionine decarboxylase compare
MMJJ_RS04685 -2.5 -9.3 carbamoyltransferase HypF compare
MMJJ_RS05720 -2.5 -2.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS09375 -2.5 -2.6 hypothetical protein compare
MMJJ_RS07720 -2.4 -3.1 UPF0058 family protein compare
MMJJ_RS03065 -2.4 -13.7 CBS domain-containing protein compare
MMJJ_RS08155 -2.4 -6.8 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS07345 -2.4 -7.3 homocysteine biosynthesis protein compare
MMJJ_RS05655 -2.4 -5.9 HisA/HisF family protein compare
MMJJ_RS06805 -2.4 -3.8 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS08330 -2.4 -3.4 SufD family Fe-S cluster assembly protein compare
MMJJ_RS07245 -2.4 -6.4 amidohydrolase family protein compare
MMJJ_RS04520 -2.4 -7.2 coenzyme F430 synthase compare
MMJJ_RS00475 -2.3 -2.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS05360 -2.3 -6.6 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS00210 -2.3 -3.5 DUF530 family protein compare
MMJJ_RS03055 -2.3 -3.9 hypothetical protein compare
MMJJ_RS08000 -2.3 -10.5 HesA/MoeB/ThiF family protein compare
MMJJ_RS00425 -2.3 -6.0 hypothetical protein compare
MMJJ_RS07810 -2.3 -11.6 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS00480 -2.3 -12.2 flippase compare
MMJJ_RS07430 -2.3 -3.8 ribonuclease VapC compare
MMJJ_RS03660 -2.3 -4.1 DUF447 family protein compare
MMJJ_RS08335 -2.3 -2.9 ABC transporter ATP-binding protein compare
MMJJ_RS09190 -2.3 -2.6 tryptophan synthase subunit beta compare
MMJJ_RS00215 -2.3 -2.5 CCA tRNA nucleotidyltransferase compare
MMJJ_RS01880 -2.2 -2.8 RlmE family RNA methyltransferase compare
MMJJ_RS07640 -2.2 -16.0 cache domain-containing protein compare
MMJJ_RS02040 -2.2 -2.0 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS03965 -2.2 -2.2 DNA-directed RNA polymerase subunit L compare
MMJJ_RS07705 -2.2 -4.0 GTP-binding protein EngB compare
MMJJ_RS07875 -2.2 -3.3 FAD-dependent oxidoreductase compare
MMJJ_RS08840 -2.2 -5.5 calcium/sodium antiporter compare
MMJJ_RS05780 -2.2 -2.5 flagellin compare
MMJJ_RS05810 -2.2 -7.5 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06050 -2.2 -9.8 molybdopterin molybdotransferase MoeA compare
MMJJ_RS06220 -2.2 -7.0 polyamine aminopropyltransferase compare
MMJJ_RS06040 -2.2 -3.6 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS06375 -2.2 -4.6 UbiX family flavin prenyltransferase compare
MMJJ_RS04050 -2.2 -2.7 dihydroneopterin aldolase family protein compare
MMJJ_RS07805 -2.2 -11.9 ferredoxin family protein compare
MMJJ_RS00600 -2.2 -2.8 hydroxymethylbilane synthase compare
MMJJ_RS07950 -2.1 -2.9 4Fe-4S binding protein compare
MMJJ_RS03095 -2.1 -3.0 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS08250 -2.1 -6.8 hydrogenase maturation peptidase HycI compare
MMJJ_RS00205 -2.1 -6.2 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS04565 -2.1 -3.3 sirohydrochlorin nickelochelatase compare
MMJJ_RS07635 -2.1 -8.7 response regulator transcription factor compare
MMJJ_RS07815 -2.1 -12.4 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS05190 -2.1 -7.6 gamma carbonic anhydrase family protein compare
MMJJ_RS02275 -2.0 -3.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS02190 -2.0 -12.2 molybdopterin biosynthesis protein compare
MMJJ_RS05770 -2.0 -2.3 flagellar protein D compare
MMJJ_RS09175 -2.0 -1.6 anthranilate synthase component I compare
MMJJ_RS06255 -2.0 -6.2 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS03005 -2.0 -3.8 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS01415 -2.0 -2.4 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS08535 -2.0 -4.2 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS04975 -2.0 -1.3 glycosyltransferase family 4 protein compare
MMJJ_RS08020 -2.0 -9.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS01350 -2.0 -7.1 sodium:proton antiporter compare
MMJJ_RS07410 -1.9 -4.3 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS05295 -1.9 -9.7 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS01810 -1.9 -2.3 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06930 -1.9 -3.5 type II methionyl aminopeptidase compare
MMJJ_RS04675 -1.9 -6.0 thiamine pyrophosphate-binding protein compare
MMJJ_RS03190 -1.9 -3.4 phosphopyruvate hydratase compare
MMJJ_RS03875 -1.9 -3.3 CBS domain-containing protein compare
MMJJ_RS05380 -1.9 -1.9 hypothetical protein compare
MMJJ_RS09135 -1.9 -7.8 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS07650 -1.9 -12.2 formate/nitrite transporter family protein compare
MMJJ_RS07155 -1.8 -8.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS04790 -1.8 -4.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06110 -1.8 -2.4 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS04575 -1.8 -8.5 DUF116 domain-containing protein compare
MMJJ_RS06185 -1.8 -4.5 cobalamin biosynthesis protein compare
MMJJ_RS05935 -1.8 -2.2 Era-like GTP-binding protein compare
MMJJ_RS00580 -1.8 -1.2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS02935 -1.8 -2.4 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS06695 -1.8 -2.4 amidohydrolase compare
MMJJ_RS03230 -1.8 -4.6 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS04670 -1.8 -3.9 DUF2117 domain-containing protein compare
MMJJ_RS03785 -1.8 -2.8 hypothetical protein compare
MMJJ_RS03765 -1.8 -7.7 hypothetical protein compare
MMJJ_RS08500 -1.8 -6.9 L-sulfolactate dehydrogenase compare
MMJJ_RS01765 -1.8 -9.1 winged helix-turn-helix domain-containing protein compare
MMJJ_RS07415 -1.8 -3.0 polyprenyl diphosphate synthase compare
MMJJ_RS05155 -1.8 -5.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS03155 -1.7 -8.7 hypothetical protein compare
MMJJ_RS06175 -1.7 -2.5 DUF1743 domain-containing protein compare
MMJJ_RS00450 -1.7 -2.3 DUF126 domain-containing protein compare
MMJJ_RS01410 -1.7 -4.8 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS09035 -1.7 -3.6 OB-fold nucleic acid binding domain-containing protein compare
MMJJ_RS06215 -1.7 -4.5 agmatinase compare
MMJJ_RS06880 -1.7 -1.5 EhaG family protein compare
MMJJ_RS04010 -1.7 -7.6 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS06760 -1.7 -5.1 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS08190 -1.7 -3.1 hypothetical protein compare
MMJJ_RS01960 -1.7 -7.2 glycosyltransferase family 2 protein compare


Specific Phenotypes

For 3 genes in this experiment