Experiment set1IT056 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Cadmium chloride hemipentahydrate 0.0625 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS05110 -2.1 -1.5 glycosyltransferase family 4 protein compare
LRK54_RS04710 -1.9 -4.7 glycosyltransferase family 2 protein compare
LRK54_RS05665 -1.8 -6.0 dTDP-glucose 4,6-dehydratase compare
LRK54_RS00085 -1.7 -2.5 tetratricopeptide repeat protein compare
LRK54_RS06415 -1.7 -2.0 hypothetical protein compare
LRK54_RS05655 -1.5 -3.7 ABC transporter permease compare
LRK54_RS05985 -1.4 -2.8 response regulator transcription factor compare
LRK54_RS04590 -1.4 -2.6 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
LRK54_RS00175 -1.1 -1.9 transposase compare
LRK54_RS04630 -1.1 -2.1 energy-dependent translational throttle protein EttA compare
LRK54_RS18055 -1.1 -4.4 glycosyltransferase family 4 protein compare
LRK54_RS16730 -1.0 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS09865 -1.0 -1.7 CRISPR-associated endonuclease Cas2 compare
LRK54_RS16810 -0.9 -2.5 hypothetical protein compare
LRK54_RS05630 -0.9 -3.9 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS17505 -0.9 -1.9 preprotein translocase subunit SecG compare
LRK54_RS05060 -0.9 -2.1 carbohydrate kinase compare
LRK54_RS02710 -0.9 -0.9 pentapeptide MXKDX repeat protein compare
LRK54_RS09385 -0.9 -1.1 DUF3363 domain-containing protein compare
LRK54_RS04820 -0.9 -0.8 GspH/FimT family pseudopilin compare
LRK54_RS13890 -0.8 -2.0 hypothetical protein compare
LRK54_RS18060 -0.8 -3.7 polysaccharide biosynthesis protein compare
LRK54_RS11585 -0.8 -6.9 cAMP-activated global transcriptional regulator CRP compare
LRK54_RS16755 -0.8 -3.4 SurA N-terminal domain-containing protein compare
LRK54_RS12735 -0.8 -2.6 NAD-dependent epimerase/dehydratase family protein compare
LRK54_RS00635 -0.8 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS06420 -0.8 -1.1 hypothetical protein compare
LRK54_RS06425 -0.8 -1.4 ribonucleoside-diphosphate reductase compare
LRK54_RS05650 -0.7 -2.7 ABC transporter ATP-binding protein compare
LRK54_RS01800 -0.7 -1.9 dCTP deaminase compare
LRK54_RS05980 -0.7 -2.1 ATP-binding protein compare
LRK54_RS15485 -0.7 -0.7 hypothetical protein compare
LRK54_RS05740 -0.7 -3.5 phosphoglycerate kinase compare
LRK54_RS06785 -0.7 -0.8 protein-disulfide reductase DsbD compare
LRK54_RS04585 -0.7 -2.6 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS08750 -0.7 -2.3 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS13105 -0.6 -2.9 FHA domain-containing protein compare
LRK54_RS09725 -0.6 -1.2 phosphopantetheine-binding protein compare
LRK54_RS04025 -0.6 -0.8 diacylglycerol kinase compare
LRK54_RS15500 -0.6 -2.1 hypothetical protein compare
LRK54_RS05500 -0.6 -1.4 hypothetical protein compare
LRK54_RS05640 -0.6 -3.5 GDP-mannose 4,6-dehydratase compare
LRK54_RS01775 -0.6 -3.0 DUF3025 domain-containing protein compare
LRK54_RS04255 -0.6 -3.6 type IV pilus twitching motility protein PilT compare
LRK54_RS05670 -0.6 -2.5 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS05645 -0.6 -4.4 glycosyltransferase compare
LRK54_RS10760 -0.6 -2.1 DUF2249 domain-containing protein compare
LRK54_RS02185 -0.6 -2.0 exodeoxyribonuclease V subunit alpha compare
LRK54_RS13540 -0.5 -1.0 flagellar biosynthetic protein FliO compare
LRK54_RS16160 -0.5 -0.8 DUF1674 domain-containing protein compare
LRK54_RS11975 -0.5 -2.1 SLC13 family permease compare
LRK54_RS11290 -0.5 -1.1 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS12860 -0.5 -2.0 RNase adapter RapZ compare
LRK54_RS04365 -0.5 -1.3 H-NS histone family protein compare
LRK54_RS14825 -0.5 -2.1 protease HtpX compare
LRK54_RS05415 -0.5 -2.6 TetR/AcrR family transcriptional regulator compare
LRK54_RS00410 -0.5 -2.0 polyhydroxyalkanoic acid system family protein compare
LRK54_RS05540 -0.5 -1.6 glycosyltransferase family 2 protein compare
LRK54_RS16050 -0.5 -0.8 tetratricopeptide repeat protein compare
LRK54_RS00440 -0.5 -2.2 high frequency lysogenization protein HflD compare
LRK54_RS13350 -0.5 -2.2 hypothetical protein compare
LRK54_RS17595 -0.4 -2.1 TolC family protein compare
LRK54_RS13620 -0.4 -1.2 hypothetical protein compare
LRK54_RS13625 -0.4 -1.4 flagellar hook-length control protein FliK compare
LRK54_RS01425 -0.4 -2.5 VOC family protein compare
LRK54_RS04715 -0.4 -2.0 hypothetical protein compare
LRK54_RS10270 -0.4 -1.5 ComF family protein compare
LRK54_RS05365 -0.4 -1.5 MarR family transcriptional regulator compare
LRK54_RS13425 -0.4 -1.2 flagellar basal-body rod protein FlgF compare
LRK54_RS04260 -0.4 -1.6 pyrroline-5-carboxylate reductase compare
LRK54_RS17400 -0.4 -0.9 hypothetical protein compare
LRK54_RS17160 -0.4 -0.9 Eco57I restriction-modification methylase domain-containing protein compare
LRK54_RS13405 -0.4 -1.5 flagellar basal body rod protein FlgB compare
LRK54_RS05635 -0.4 -2.4 dehydrogenase compare
LRK54_RS17370 -0.4 -1.6 hypothetical protein compare
LRK54_RS13400 -0.4 -1.2 chemotaxis protein compare
LRK54_RS17600 -0.4 -1.6 hypothetical protein compare
LRK54_RS17860 -0.4 -2.0 hypothetical protein compare
LRK54_RS11565 -0.4 -1.1 anthranilate phosphoribosyltransferase compare
LRK54_RS16430 -0.4 -2.4 hypothetical protein compare
LRK54_RS11125 -0.4 -2.0 sulfotransferase compare
LRK54_RS05800 -0.4 -1.8 group III truncated hemoglobin compare
LRK54_RS06815 -0.3 -1.9 zinc-ribbon and DUF3426 domain-containing protein compare
LRK54_RS12170 -0.3 -1.7 uracil-DNA glycosylase family protein compare
LRK54_RS01700 -0.3 -1.5 tRNA pseudouridine(38-40) synthase TruA compare
LRK54_RS01465 -0.3 -1.5 RNA-binding S4 domain-containing protein compare
LRK54_RS05195 -0.3 -1.1 sigma-70 family RNA polymerase sigma factor compare
LRK54_RS10225 -0.3 -1.5 DNA-3-methyladenine glycosylase I compare
LRK54_RS02470 -0.3 -1.2 YciI family protein compare
LRK54_RS10150 -0.3 -0.4 DNA topoisomerase I compare
LRK54_RS04165 -0.3 -1.0 chemotaxis protein CheW compare
LRK54_RS00865 -0.3 -1.5 ABC transporter ATP-binding protein compare
LRK54_RS04755 -0.3 -1.0 hypothetical protein compare
LRK54_RS18105 -0.3 -1.2 DNA oxidative demethylase AlkB compare
LRK54_RS06685 -0.3 -2.5 TolC family outer membrane protein compare
LRK54_RS10620 -0.3 -1.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
LRK54_RS06475 -0.3 -1.9 lipoyl synthase compare
LRK54_RS04190 -0.3 -1.3 response regulator compare
LRK54_RS15820 -0.3 -0.7 hypothetical protein compare
LRK54_RS01995 -0.3 -1.0 hypothetical protein compare
LRK54_RS11170 -0.3 -1.3 NADP-dependent malic enzyme compare
LRK54_RS07460 -0.3 -0.7 hypothetical protein compare
LRK54_RS05490 -0.3 -1.8 energy transducer TonB compare
LRK54_RS05535 -0.3 -1.6 glycosyltransferase family 2 protein compare
LRK54_RS16255 -0.3 -0.5 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS16575 -0.3 -2.8 GGDEF domain-containing phosphodiesterase compare
LRK54_RS05580 -0.3 -1.3 hypothetical protein compare
LRK54_RS04960 -0.3 -1.8 peptidoglycan editing factor PgeF compare
LRK54_RS13680 -0.3 -1.3 STAS domain-containing protein compare
LRK54_RS06045 -0.3 -1.6 hypothetical protein compare
LRK54_RS02380 -0.3 -1.3 argininosuccinate lyase compare
LRK54_RS05035 -0.3 -2.0 response regulator compare
LRK54_RS06865 -0.3 -1.8 uroporphyrinogen-III C-methyltransferase compare
LRK54_RS11385 -0.3 -1.0 co-chaperone DjlA compare
LRK54_RS14010 -0.3 -1.4 peptidylprolyl isomerase compare
LRK54_RS04210 -0.3 -0.7 YqgE/AlgH family protein compare
LRK54_RS16535 -0.3 -1.7 VIT family protein compare
LRK54_RS16425 -0.3 -1.5 hypothetical protein compare
LRK54_RS05900 -0.3 -0.9 VOC family protein compare
LRK54_RS13925 -0.3 -1.0 deoxyribose-phosphate aldolase compare
LRK54_RS01925 -0.3 -1.3 TolC family protein compare
LRK54_RS12030 -0.3 -1.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
LRK54_RS12920 -0.3 -1.5 hypothetical protein compare
LRK54_RS08585 -0.3 -2.5 RimK family alpha-L-glutamate ligase compare
LRK54_RS00490 -0.3 -0.4 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK54_RS12355 -0.3 -1.4 hypothetical protein compare
LRK54_RS08125 -0.3 -1.7 undecaprenyl-diphosphate phosphatase compare
LRK54_RS17580 -0.3 -1.2 copper-binding protein compare
LRK54_RS01535 -0.3 -1.3 high-potential iron-sulfur protein compare
LRK54_RS16150 -0.3 -0.9 cell wall hydrolase compare
LRK54_RS08630 -0.3 -1.6 YecA family protein compare
LRK54_RS01505 -0.3 -1.9 fasciclin domain-containing protein compare
LRK54_RS17050 -0.3 -2.0 hypothetical protein compare
LRK54_RS02410 -0.3 -1.1 FMN-binding negative transcriptional regulator compare
LRK54_RS06630 -0.3 -1.8 transcriptional regulator GcvA compare
LRK54_RS09825 -0.3 -1.9 alpha/beta hydrolase compare
LRK54_RS16940 -0.3 -1.2 RNA polymerase sigma factor RpoE compare
LRK54_RS06070 -0.3 -1.7 hypothetical protein compare
LRK54_RS07580 -0.3 -1.6 Na+/H+ antiporter subunit E compare
LRK54_RS10985 -0.3 -1.3 DUF938 domain-containing protein compare
LRK54_RS17750 -0.3 -1.1 DUF190 domain-containing protein compare
LRK54_RS06155 -0.3 -0.3 cysteine dioxygenase compare
LRK54_RS08625 -0.3 -2.3 exodeoxyribonuclease III compare
LRK54_RS07670 -0.3 -1.6 hypothetical protein compare
LRK54_RS05785 -0.3 -1.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS02705 -0.3 -1.2 nitronate monooxygenase compare
LRK54_RS08405 -0.3 -1.6 GlsB/YeaQ/YmgE family stress response membrane protein compare
LRK54_RS14595 -0.3 -1.3 alpha/beta hydrolase compare
LRK54_RS05990 -0.3 -1.6 hypothetical protein compare
LRK54_RS15665 -0.2 -1.3 SCO family protein compare
LRK54_RS00305 -0.2 -1.8 asparagine synthase B compare
LRK54_RS02690 -0.2 -1.5 GNAT family N-acetyltransferase compare
LRK54_RS05235 -0.2 -1.4 cytochrome b compare
LRK54_RS09420 -0.2 -0.8 RNA polymerase sigma factor compare
LRK54_RS08115 -0.2 -1.3 P-II family nitrogen regulator compare
LRK54_RS15025 -0.2 -1.2 phosphate regulon sensor histidine kinase PhoR compare
LRK54_RS13665 -0.2 -1.6 chemoreceptor glutamine deamidase CheD compare
LRK54_RS05495 -0.2 -0.9 met regulon transcriptional regulator MetJ compare
LRK54_RS00670 -0.2 -1.2 OmpA family protein compare
LRK54_RS06100 -0.2 -1.4 hypothetical protein compare
LRK54_RS13600 -0.2 -1.8 flagellar motor protein compare
LRK54_RS10385 -0.2 -1.2 S-ribosylhomocysteine lyase compare
LRK54_RS05855 -0.2 -0.9 MarR family transcriptional regulator compare
LRK54_RS02065 -0.2 -1.2 GNAT family N-acetyltransferase compare
LRK54_RS13460 -0.2 -1.7 flagellin compare
LRK54_RS14775 -0.2 -1.5 cold-shock protein compare
LRK54_RS02090 -0.2 -2.0 NAD-glutamate dehydrogenase compare
LRK54_RS13530 -0.2 -1.3 flagellar motor switch protein FliM compare
LRK54_RS08760 -0.2 -0.9 transaldolase compare
LRK54_RS16640 -0.2 -1.1 tRNA pseudouridine(13) synthase TruD compare
LRK54_RS06065 -0.2 -1.4 hypothetical protein compare
LRK54_RS16650 -0.2 -1.3 5'/3'-nucleotidase SurE compare
LRK54_RS07935 -0.2 -1.1 dienelactone hydrolase family protein compare
LRK54_RS10255 -0.2 -1.5 8-amino-7-oxononanoate synthase compare
LRK54_RS08025 -0.2 -0.4 NAD(P)-dependent oxidoreductase compare
LRK54_RS14335 -0.2 -1.3 lipoate--protein ligase family protein compare
LRK54_RS17650 -0.2 -1.2 inorganic diphosphatase compare
LRK54_RS02140 -0.2 -1.4 hypothetical protein compare
LRK54_RS16460 -0.2 -1.4 hypothetical protein compare
LRK54_RS14630 -0.2 -1.7 NAD(P)H-dependent oxidoreductase compare
LRK54_RS13585 -0.2 -0.6 chemotaxis response regulator CheY compare
LRK54_RS05200 -0.2 -0.6 hypothetical protein compare
LRK54_RS00805 -0.2 -0.7 segregation/condensation protein A compare
LRK54_RS01320 -0.2 -1.2 zinc-dependent alcohol dehydrogenase family protein compare
LRK54_RS02695 -0.2 -0.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
LRK54_RS11620 -0.2 -1.0 hypothetical protein compare
LRK54_RS15905 -0.2 -1.5 cation transporter compare
LRK54_RS12055 -0.2 -0.7 dipeptide epimerase compare
LRK54_RS14715 -0.2 -1.6 cytochrome c compare
LRK54_RS05660 -0.2 -1.5 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS14695 -0.2 -1.6 rhomboid family intramembrane serine protease compare
LRK54_RS00735 -0.2 -1.2 YidB family protein compare
LRK54_RS06515 -0.2 -0.6 rod shape-determining protein MreD compare
LRK54_RS16405 -0.2 -1.1 VOC family protein compare
LRK54_RS01900 -0.2 -1.6 DMT family transporter compare
LRK54_RS02895 -0.2 -1.5 rhomboid family intramembrane serine protease compare
LRK54_RS10955 -0.2 -1.7 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS17220 -0.2 -0.6 cbb3-type cytochrome c oxidase subunit 3 compare
LRK54_RS15455 -0.2 -0.5 DinB family protein compare
LRK54_RS15655 -0.2 -1.1 AzlD domain-containing protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in stress experiments

For stress Cadmium chloride hemipentahydrate across organisms