Experiment set1IT056 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20625 -4.9 -3.4 3-isopropylmalate dehydratase compare
AO353_12070 -4.7 -9.5 imidazoleglycerol-phosphate dehydratase compare
AO353_05115 -4.7 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12085 -4.6 -7.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07290 -4.6 -12.2 mannose-1-phosphate guanylyltransferase compare
AO353_13165 -4.2 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_07230 -4.1 -18.9 anthranilate synthase compare
AO353_08345 -4.1 -10.6 dihydroxy-acid dehydratase compare
AO353_09240 -4.1 -4.0 acetylglutamate kinase compare
AO353_05110 -4.1 -13.5 histidinol dehydrogenase compare
AO353_00310 -4.0 -12.3 transaldolase compare
AO353_20635 -4.0 -15.1 3-isopropylmalate dehydrogenase compare
AO353_08180 -4.0 -15.7 homoserine O-acetyltransferase compare
AO353_14505 -3.9 -14.8 ketol-acid reductoisomerase compare
AO353_12520 -3.9 -14.7 glutamate synthase compare
AO353_12515 -3.9 -24.4 glutamate synthase compare
AO353_12115 -3.9 -4.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_20665 -3.8 -12.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07155 -3.8 -9.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_08185 -3.7 -12.1 methionine biosynthesis protein MetW compare
AO353_12090 -3.7 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20695 -3.6 -8.0 O-succinylhomoserine sulfhydrylase compare
AO353_07210 -3.6 -7.4 indole-3-glycerol-phosphate synthase compare
AO353_20620 -3.6 -8.9 isopropylmalate isomerase compare
AO353_10710 -3.5 -6.7 tryptophan synthase subunit beta compare
AO353_12365 -3.5 -5.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_09000 -3.4 -7.7 argininosuccinate lyase compare
AO353_14495 -3.4 -14.8 acetolactate synthase 3 catalytic subunit compare
AO353_08685 -3.4 -11.9 N-acetylglutamate synthase compare
AO353_02075 -3.4 -13.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08015 -3.4 -8.9 5,10-methylenetetrahydrofolate reductase compare
AO353_12075 -3.4 -11.1 imidazole glycerol phosphate synthase subunit HisH compare
AO353_01975 -3.2 -11.6 glycosyl transferase compare
AO353_14370 -3.2 -9.0 glucose-6-phosphate isomerase compare
AO353_12500 -3.2 -3.1 shikimate kinase compare
AO353_01550 -3.2 -7.8 hypothetical protein compare
AO353_20175 -3.1 -5.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_20835 -3.1 -6.8 Ribokinase (EC 2.7.1.15) (from data) conserved
AO353_20540 -3.1 -9.6 aromatic amino acid aminotransferase compare
AO353_07215 -3.0 -9.4 anthranilate phosphoribosyltransferase compare
AO353_20825 -3.0 -10.4 ABC transporter permease conserved
AO353_10025 -3.0 -16.3 pyruvate carboxylase subunit B compare
AO353_04105 -2.9 -11.6 argininosuccinate synthase compare
AO353_04185 -2.9 -8.5 DeoR family transcriptional regulator compare
AO353_26900 -2.9 -7.8 glycerate kinase compare
AO353_04155 -2.8 -13.1 ornithine carbamoyltransferase compare
AO353_03360 -2.8 -10.8 glucose-6-phosphate dehydrogenase compare
AO353_06495 -2.7 -6.8 gamma-glutamyl phosphate reductase compare
AO353_10705 -2.7 -6.5 tryptophan synthase subunit alpha compare
AO353_14500 -2.6 -9.1 acetolactate synthase 3 regulatory subunit compare
AO353_10030 -2.6 -12.7 pyruvate carboxylase subunit A compare
AO353_03580 -2.6 -5.0 ATP-dependent DNA helicase RuvB compare
AO353_08265 -2.6 -8.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_00825 -2.5 -5.3 porin compare
AO353_22945 -2.5 -13.2 glycogen branching protein compare
AO353_14420 -2.4 -5.8 molecular chaperone DnaK compare
AO353_05800 -2.4 -7.2 hypothetical protein compare
AO353_14400 -2.4 -6.3 Fis family transcriptional regulator compare
AO353_08510 -2.4 -7.2 3-phosphoglycerate dehydrogenase compare
AO353_15295 -2.4 -7.9 division/cell wall cluster transcriptional repressor MraZ compare
AO353_02250 -2.3 -4.8 chorismate synthase compare
AO353_06045 -2.3 -9.8 exodeoxyribonuclease V subunit beta compare
AO353_20820 -2.3 -8.3 sugar ABC transporter ATP-binding protein conserved
AO353_08465 -2.2 -15.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_26830 -2.2 -4.6 histidine kinase compare
AO353_20815 -2.2 -4.5 LacI family transcriptional regulator compare
AO353_22800 -2.1 -3.5 sulfite reductase compare
AO353_10035 -2.1 -8.6 LysR family transcriptional regulator compare
AO353_13070 -2.0 -9.4 phosphoserine phosphatase compare
AO353_05075 -2.0 -11.1 adenylylsulfate kinase compare
AO353_07315 -2.0 -3.2 rRNA methyltransferase compare
AO353_06050 -1.9 -8.3 exodeoxyribonuclease V subunit gamma compare
AO353_20830 -1.9 -6.3 LacI family transcriptional regulator conserved
AO353_06040 -1.9 -4.9 exodeoxyribonuclease V subunit alpha compare
AO353_18780 -1.9 -6.7 cobyrinic acid a,c-diamide synthase compare
AO353_03585 -1.9 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_01375 -1.8 -8.4 phosphate acyltransferase compare
AO353_24130 -1.8 -3.9 hypothetical protein compare
AO353_04355 -1.8 -3.2 homoserine dehydrogenase compare
AO353_08165 -1.8 -3.8 pyrroline-5-carboxylate reductase compare
AO353_03420 -1.8 -5.3 phosphogluconate dehydratase compare
AO353_00750 -1.8 -5.0 GntR family transcriptional regulator compare
AO353_05080 -1.7 -10.0 sulfate adenylyltransferase compare
AO353_02710 -1.7 -10.9 (p)ppGpp synthetase compare
AO353_03365 -1.7 -8.9 transcriptional regulator compare
AO353_19605 -1.6 -2.6 hypothetical protein compare
AO353_09275 -1.6 -3.9 DNA-directed RNA polymerase subunit omega compare
AO353_00460 -1.6 -3.5 TetR family transcriptional regulator compare
AO353_23495 -1.6 -3.6 SAM-dependent methyltransferase compare
AO353_04220 -1.5 -4.3 chemotaxis protein CheY compare
AO353_05490 -1.5 -6.2 transcriptional regulator conserved
AO353_04175 -1.5 -5.0 glycerol uptake facilitator GlpF compare
AO353_09135 -1.5 -2.5 cytochrome C compare
AO353_19250 -1.5 -2.9 molybdenum cofactor guanylyltransferase compare
AO353_10945 -1.5 -3.5 cytochrome C compare
AO353_03590 -1.4 -3.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_03275 -1.4 -3.2 LysR family transcriptional regulator compare
AO353_05695 -1.4 -9.9 transcriptional regulator PdhR compare
AO353_12870 -1.4 -10.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_14220 -1.4 -2.3 ribosomal large subunit pseudouridine synthase D compare
AO353_05230 -1.4 -6.6 ribonuclease G compare
AO353_06550 -1.3 -6.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
AO353_15925 -1.3 -4.6 2-isopropylmalate synthase compare
AO353_13200 -1.3 -8.8 exoribonuclease R compare
AO353_08115 -1.2 -4.5 energy transducer TonB compare
AO353_00835 -1.2 -5.6 transporter compare
AO353_21830 -1.2 -9.2 chemotaxis protein CheY compare
AO353_04055 -1.2 -1.8 methionine--tRNA ligase compare
AO353_05150 -1.2 -4.2 ABC transporter ATP-binding protein compare
AO353_11530 -1.1 -6.9 diguanylate cyclase compare
AO353_12015 -1.1 -2.2 antitoxin compare
AO353_15250 -1.1 -2.6 cytochrome B compare
AO353_14115 -1.1 -2.7 gamma-glutamyl kinase compare
AO353_07220 -1.1 -5.9 anthranilate synthase compare
AO353_01080 -1.1 -6.2 hypothetical protein compare
AO353_16940 -1.0 -4.8 deoxycytidine triphosphate deaminase compare
AO353_11165 -1.0 -6.5 hypothetical protein compare
AO353_27680 -1.0 -4.8 ATP-dependent Clp protease adaptor ClpS compare
AO353_16605 -1.0 -7.4 protein-L-isoaspartate O-methyltransferase compare
AO353_02000 -1.0 -2.9 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_00495 -1.0 -2.2 DNA topoisomerase I compare
AO353_12390 -1.0 -3.2 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_03615 -1.0 -2.9 cold-shock protein compare
AO353_19055 -1.0 -4.6 universal stress protein UspA compare
AO353_00620 -1.0 -2.1 cytochrome C oxidase Cbb3 compare
AO353_18540 -1.0 -2.8 pseudouridine synthase compare
AO353_05690 -1.0 -3.0 SsrA-binding protein compare
AO353_06100 -0.9 -1.6 thymidylate synthase compare
AO353_07250 -0.9 -1.5 polyamine ABC transporter permease compare
AO353_07560 -0.9 -6.8 malate synthase G compare
AO353_09440 -0.9 -2.4 type VI secretion protein compare
AO353_19310 -0.9 -2.3 enoyl-CoA hydratase compare
AO353_20370 -0.9 -2.5 MerR family transcriptional regulator compare
AO353_05135 -0.9 -5.9 toluene tolerance protein compare
AO353_15555 -0.9 -3.6 fumarylacetoacetase compare
AO353_02070 -0.9 -3.2 prephenate dehydratase compare
AO353_15680 -0.9 -3.0 cation-binding protein compare
AO353_17475 -0.9 -2.9 hypothetical protein compare
AO353_00605 -0.9 -4.6 cytochrome C oxidase Cbb3 compare
AO353_12395 -0.9 -2.3 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_06405 -0.9 -3.5 hypothetical protein compare
AO353_07445 -0.8 -1.3 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_04340 -0.8 -2.3 hypothetical protein compare
AO353_27650 -0.8 -2.7 cell division protein FtsK compare
AO353_10780 -0.8 -1.2 DNA-binding protein compare
AO353_28930 -0.8 -2.1 hypothetical protein compare
AO353_27675 -0.8 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_27000 -0.8 -1.8 hypothetical protein compare
AO353_14930 -0.8 -2.6 GntR family transcriptional regulator compare
AO353_20095 -0.8 -3.4 histidine kinase compare
AO353_21330 -0.8 -4.9 RpiR family transcriptional regulator compare
AO353_27995 -0.8 -3.0 RpiR family transcriptional regulator compare
AO353_29000 -0.8 -2.4 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_02320 -0.8 -4.2 allantoinase compare
AO353_17625 -0.8 -5.0 RNA polymerase subunit sigma compare
AO353_04180 -0.8 -4.8 glycerol kinase compare
AO353_10630 -0.8 -3.2 16S rRNA methyltransferase compare
AO353_05140 -0.8 -4.4 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_07255 -0.8 -6.1 polyamine ABC transporter substrate-binding protein compare
AO353_16810 -0.7 -2.4 recombinase RecX compare
AO353_22475 -0.7 -2.6 alkaline phosphatase compare
AO353_12240 -0.7 -3.5 histidine utilization repressor compare
AO353_22585 -0.7 -4.1 HxlR family transcriptional regulator compare
AO353_19145 -0.7 -2.4 protease HtpX compare
AO353_26050 -0.7 -2.1 hypothetical protein compare
AO353_19435 -0.7 -2.1 TetR family transcriptional regulator compare
AO353_01915 -0.7 -1.4 GlcG protein compare
AO353_12345 -0.7 -1.2 twin-arginine protein translocation system subunit TatC compare
AO353_13020 -0.7 -4.8 hypothetical protein compare
AO353_21630 -0.7 -1.8 precorrin-4 C11-methyltransferase compare
AO353_09895 -0.7 -4.2 phosphate ABC transporter permease compare
AO353_20860 -0.7 -2.0 hypothetical protein compare
AO353_18285 -0.7 -1.6 3-phosphoglycerate kinase compare
AO353_05145 -0.7 -3.7 ABC transporter permease compare
AO353_17450 -0.7 -2.6 hypothetical protein compare
AO353_20505 -0.7 -2.9 cytidyltransferase compare
AO353_06540 -0.7 -1.7 hypothetical protein compare
AO353_05195 -0.7 -4.0 glmZ(sRNA)-inactivating NTPase compare
AO353_13140 -0.7 -3.4 tRNA dimethylallyltransferase compare
AO353_14460 -0.7 -3.4 competence protein TfoX compare
AO353_14395 -0.7 -2.7 poly(A) polymerase compare
AO353_00330 -0.7 -4.3 hypothetical protein compare
AO353_18525 -0.7 -2.9 hypothetical protein compare
AO353_09900 -0.7 -4.7 phosphate ABC transporter permease compare
AO353_19090 -0.7 -1.6 MarR family transcriptional regulator compare
AO353_08470 -0.7 -1.5 RNA pyrophosphohydrolase compare
AO353_14385 -0.6 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO353_02595 -0.6 -2.2 cobalamin synthase compare
AO353_00430 -0.6 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_05130 -0.6 -1.0 anti-anti-sigma factor compare
AO353_25825 -0.6 -4.1 sodium:proton antiporter compare
AO353_21430 -0.6 -1.9 hypothetical protein compare
AO353_16805 -0.6 -2.9 recombinase RecA compare
AO353_24120 -0.6 -1.6 hypothetical protein compare
AO353_20680 -0.6 -2.3 cell division protein compare
AO353_03785 -0.6 -3.8 hypothetical protein compare
AO353_00540 -0.6 -2.0 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_12650 -0.6 -1.0 hypothetical protein compare
AO353_09050 -0.6 -2.4 recombinase XerC compare
AO353_26520 -0.6 -1.4 TetR family transcriptional regulator compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source D-Ribose in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Ribose across organisms