Experiment set1IT056 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Ribose carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_03425 +4.7 39.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_03775 +3.8 29.7 pyruvate kinase compare
AO353_10040 +3.3 27.5 transcriptional regulator compare
AO353_11850 +3.1 19.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_16615 +3.1 25.1 RNA polymerase sigma factor RpoS compare
AO353_21625 +2.3 9.3 Fe/S biogenesis protein NfuA compare
AO353_19020 +2.3 5.9 hypothetical protein compare
AO353_12105 +2.3 17.6 peptidase S41 compare
AO353_14775 +2.3 16.8 hypothetical protein compare
AO353_12315 +2.3 20.1 glucosyltransferase MdoH compare
AO353_12310 +2.3 20.1 glucan biosynthesis protein G compare
AO353_06365 +2.2 18.6 hypothetical protein compare
AO353_00300 +2.1 10.8 DNA helicase compare
AO353_08880 +2.0 8.4 exopolyphosphatase compare
AO353_19015 +1.7 14.9 hypothetical protein compare
AO353_00305 +1.7 9.2 ATP-binding protein compare
AO353_12940 +1.6 12.7 glycosyl transferase compare
AO353_19030 +1.6 11.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_03020 +1.5 10.8 arginine N-succinyltransferase compare
AO353_00875 +1.5 9.5 transcriptional regulator compare
AO353_17205 +1.5 4.3 beta-ketoadipyl CoA thiolase compare
AO353_17635 +1.4 10.3 RNA polymerase subunit sigma compare
AO353_05340 +1.4 8.1 histidine kinase compare
AO353_12950 +1.4 10.4 polymerase compare
AO353_12470 +1.3 12.0 peptidase compare
AO353_12360 +1.3 9.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_16450 +1.2 10.4 protein-PII uridylyltransferase compare
AO353_12935 +1.2 5.9 glycosyltransferase compare
AO353_08475 +1.2 8.5 phosphoserine phosphatase compare
AO353_24665 +1.2 9.6 phosphoglucomutase compare
AO353_20660 +1.2 6.6 pseudouridine synthase compare
AO353_03770 +1.2 3.7 hypothetical protein compare
AO353_17855 +1.2 3.9 ribonuclease D compare
AO353_03430 +1.2 4.8 methylglyoxal synthase compare
AO353_23805 +1.1 5.6 aldo/keto reductase compare
AO353_08965 +1.1 7.7 transcriptional regulator compare
AO353_11730 +1.0 8.6 glutamate--cysteine ligase compare
AO353_08505 +1.0 8.6 FAD-linked oxidase compare
AO353_28555 +1.0 3.0 LysR family transcriptional regulator compare
AO353_17200 +1.0 5.4 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) compare
AO353_12930 +1.0 3.4 GlcNAc-PI de-N-acetylase compare
AO353_08110 +1.0 6.3 glutathione synthetase compare
AO353_14990 +0.9 3.4 hypothetical protein compare
AO353_08895 +0.9 5.0 hypothetical protein compare
AO353_15285 +0.9 7.7 hypothetical protein compare
AO353_25835 +0.9 5.1 6-phosphogluconate dehydrogenase compare
AO353_12305 +0.9 5.0 D-tyrosyl-tRNA(Tyr) deacylase compare
AO353_03235 +0.9 6.4 glutamate-pyruvate aminotransferase compare
AO353_02135 +0.8 5.9 hypothetical protein compare
AO353_26115 +0.8 1.6 hypothetical protein compare
AO353_12880 +0.8 1.9 ADP-heptose--LPS heptosyltransferase compare
AO353_06530 +0.8 7.2 peptidase C13 compare
AO353_05935 +0.8 5.9 Kynureninase (EC 3.7.1.3) (from data) compare
AO353_02720 +0.8 5.0 cysteine synthase compare
AO353_16440 +0.8 2.6 ArsC family transcriptional regulator compare
AO353_17195 +0.8 6.1 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) compare
AO353_06585 +0.8 5.6 hypothetical protein compare
AO353_15900 +0.8 2.7 GTP-binding protein compare
AO353_05240 +0.8 2.0 rod shape-determining protein MreD compare
AO353_12045 +0.8 3.9 iron transporter compare
AO353_24440 +0.8 2.4 reactive intermediate/imine deaminase compare
AO353_17620 +0.8 6.9 L-aspartate oxidase compare
AO353_03405 +0.8 5.5 histidine kinase compare
AO353_03525 +0.7 6.0 quinolinate synthase A compare
AO353_21440 +0.7 3.2 hypothetical protein compare
AO353_07460 +0.7 2.2 DNA-binding protein compare
AO353_00105 +0.7 2.0 hypothetical protein compare
AO353_18560 +0.7 1.8 class I peptide chain release factor compare
AO353_13030 +0.7 5.0 cytoplasmic protein compare
AO353_06490 +0.7 3.2 nicotinate-nucleotide adenylyltransferase compare
AO353_04190 +0.7 1.4 glycerol-3-phosphate dehydrogenase compare
AO353_20185 +0.7 4.2 DNA-binding protein compare
AO353_02025 +0.7 5.6 mannose-1-phosphate guanyltransferase compare
AO353_19040 +0.7 4.3 thioredoxin compare
AO353_03025 +0.7 2.7 acetylornithine aminotransferase compare
AO353_09250 +0.7 2.1 exodeoxyribonuclease III compare
AO353_25585 +0.7 1.7 argininosuccinate lyase compare
AO353_09720 +0.7 1.5 hypothetical protein compare
AO353_13155 +0.7 2.7 hypothetical protein compare
AO353_00125 +0.7 2.0 hypothetical protein compare
AO353_25785 +0.6 2.6 adhesin compare
AO353_19095 +0.6 2.2 hypothetical protein compare
AO353_01970 +0.6 5.1 hypothetical protein compare
AO353_09235 +0.6 4.4 phosphoglucomutase compare
AO353_13420 +0.6 1.9 hypothetical protein compare
AO353_18325 +0.6 2.1 hypothetical protein compare
AO353_03415 +0.6 2.8 glucokinase compare
AO353_18715 +0.6 1.6 histidine kinase compare
AO353_08065 +0.6 4.5 amino acid dehydrogenase compare
AO353_17885 +0.6 1.0 hypothetical protein compare
AO353_08485 +0.6 5.2 threonine dehydratase compare
AO353_24915 +0.6 1.7 hypothetical protein compare
AO353_16880 +0.6 5.2 potassium transporter Kup compare
AO353_05520 +0.6 3.2 nicotinate-nucleotide pyrophosphorylase compare
AO353_01115 +0.6 3.8 inducer of phenazine A compare
AO353_23405 +0.6 1.7 hypothetical protein compare
AO353_00350 +0.6 3.3 copper-binding protein compare
AO353_16425 +0.6 1.4 Fe-S metabolism protein SufE compare
AO353_04810 +0.6 1.2 hypothetical protein compare
AO353_09040 +0.6 1.6 diaminopimelate epimerase compare
AO353_21110 +0.6 1.9 hypothetical protein compare
AO353_27220 +0.6 2.7 hypothetical protein compare
AO353_17085 +0.5 1.5 hypothetical protein compare
AO353_13465 +0.5 3.2 hypothetical protein compare
AO353_27315 +0.5 3.0 hypothetical protein compare
AO353_17365 +0.5 1.8 hypothetical protein compare
AO353_07465 +0.5 2.2 addiction module toxin RelE compare
AO353_00385 +0.5 2.6 glycerophosphodiester phosphodiesterase compare
AO353_08780 +0.5 3.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_16800 +0.5 3.3 damage-inducible protein CinA compare
AO353_04415 +0.5 2.8 preQ0 transporter compare
AO353_23920 +0.5 2.2 chemotaxis protein CheR compare
AO353_23165 +0.5 2.3 cupin compare
AO353_09165 +0.5 2.5 Fe-S oxidoreductase compare
AO353_20590 +0.5 1.6 hydrolase compare
AO353_01110 +0.5 4.2 inducer of phenazine B compare
AO353_27660 +0.5 1.9 leucyl/phenylalanyl-tRNA--protein transferase compare
AO353_04275 +0.5 2.6 polyamine ABC transporter ATP-binding protein compare
AO353_00910 +0.5 2.9 ATP-dependent zinc protease compare
AO353_00360 +0.5 2.7 ATPase compare
AO353_02995 +0.5 3.6 succinylglutamate desuccinylase compare
AO353_18120 +0.5 1.2 hypothetical protein compare
AO353_14945 +0.5 1.7 hypothetical protein compare
AO353_00265 +0.5 1.7 hypothetical protein compare
AO353_00345 +0.5 3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO353_12110 +0.5 3.6 peptidase M23 compare
AO353_02785 +0.5 4.1 hypothetical protein compare
AO353_01085 +0.5 3.7 methionyl-tRNA formyltransferase compare
AO353_18270 +0.5 2.7 peptidylprolyl isomerase compare
AO353_16015 +0.5 3.5 tRNA (mo5U34)-methyltransferase compare
AO353_01995 +0.5 4.2 hypothetical protein compare
AO353_21355 +0.5 0.9 xylose isomerase compare
AO353_21400 +0.5 1.5 conjugal transfer protein TraR compare
AO353_18095 +0.5 2.1 hypothetical protein compare
AO353_05530 +0.5 2.2 hypothetical protein compare
AO353_08130 +0.5 1.5 uracil phosphoribosyltransferase compare
AO353_10085 +0.5 1.0 pyridoxamine kinase compare
AO353_17005 +0.5 1.6 hypothetical protein compare
AO353_17540 +0.5 0.6 helicase compare
AO353_22955 +0.5 1.6 tRNA hydroxylase compare
AO353_01990 +0.5 3.2 UDP-N-acetylglucosamine 2-epimerase compare
AO353_19300 +0.5 2.5 exonuclease compare
AO353_02010 +0.5 3.1 glycosyl transferase family 1 compare
AO353_03830 +0.5 1.8 antibiotic biosynthesis monooxygenase compare
AO353_21540 +0.5 1.5 type VI secretion protein compare
AO353_22135 +0.5 2.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO353_19050 +0.5 1.7 5'-nucleotidase compare
AO353_07235 +0.4 3.1 phosphoglycolate phosphatase compare
AO353_26515 +0.4 3.6 phosphatidylserine synthase compare
AO353_19045 +0.4 2.7 2-dehydropantoate 2-reductase compare
AO353_21935 +0.4 1.0 nitrite reductase compare
AO353_06415 +0.4 2.4 hypothetical protein compare
AO353_23350 +0.4 1.3 hypothetical protein compare
AO353_20200 +0.4 2.0 peptidylprolyl isomerase compare
AO353_22835 +0.4 2.1 antibiotic biosynthesis monooxygenase compare
AO353_09945 +0.4 2.4 LysR family transcriptional regulator compare
AO353_21990 +0.4 1.8 cytochrome C compare
AO353_23235 +0.4 2.4 NADP oxidoreductase compare
AO353_17160 +0.4 1.2 aspartate-semialdehyde dehydrogenase compare
AO353_26285 +0.4 1.1 hypothetical protein compare
AO353_01095 +0.4 3.7 hypothetical protein compare
AO353_12385 +0.4 2.1 polyhydroxyalkanoic acid system protein compare
AO353_17375 +0.4 3.7 beta-D-glucoside glucohydrolase compare
AO353_09915 +0.4 3.1 long-chain acyl-CoA thioester hydrolase compare
AO353_21290 +0.4 1.4 hypothetical protein compare
AO353_26610 +0.4 2.4 hypothetical protein compare
AO353_09030 +0.4 1.1 iron donor protein CyaY compare
AO353_22150 +0.4 0.9 iron transporter compare
AO353_08900 +0.4 3.7 hypothetical protein compare
AO353_26165 +0.4 1.6 hypothetical protein compare
AO353_23270 +0.4 1.6 hypothetical protein compare
AO353_26935 +0.4 1.0 LysR family transcriptional regulator compare
AO353_28815 +0.4 0.9 hypothetical protein compare
AO353_18000 +0.4 2.9 allophanate hydrolase compare
AO353_26550 +0.4 0.9 hypothetical protein compare
AO353_12790 +0.4 0.8 hypothetical protein compare
AO353_02220 +0.4 0.8 hypothetical protein compare
AO353_00900 +0.4 2.9 2-methylisocitrate lyase compare
AO353_17075 +0.4 2.3 short-chain dehydrogenase compare
AO353_26440 +0.4 1.6 hypothetical protein compare
AO353_26870 +0.4 1.4 AP endonuclease compare
AO353_12300 +0.4 2.6 proline iminopeptidase compare
AO353_08535 +0.4 3.2 hypothetical protein compare
AO353_29165 +0.4 1.7 fructose-bisphosphate aldolase compare
AO353_06775 +0.4 2.7 dTDP-4-dehydrorhamnose reductase compare
AO353_21445 +0.4 1.6 cation:proton antiporter compare
AO353_23965 +0.4 2.1 RND transporter MFP subunit compare
AO353_16350 +0.4 1.8 SAM-dependent methyltransferase compare
AO353_08545 +0.4 2.3 thiol-disulfide isomerase compare
AO353_02860 +0.4 2.2 flagellar biosynthesis protein FlgB compare
AO353_24300 +0.4 2.0 transcriptional regulator compare
AO353_22075 +0.4 1.9 hypothetical protein compare
AO353_15785 +0.4 2.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_12145 +0.4 1.9 nitrogen regulation protein NR(I) compare
AO353_25925 +0.4 0.7 hypothetical protein compare
AO353_04460 +0.4 2.7 N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data) compare
AO353_18655 +0.4 1.7 flagellar assembly protein FliT compare
AO353_03370 +0.4 1.5 aldose epimerase compare
AO353_27350 +0.4 1.0 hypothetical protein compare
AO353_16050 +0.4 3.0 porin compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source D-Ribose in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Ribose across organisms