Experiment set1IT056 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Sodium nitrite 6 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS06165 +1.2 7.4 nitrite transporter, HPP family (from data) conserved
CA265_RS00270 +1.0 2.1 hypothetical protein compare
CA265_RS10540 +0.9 1.8 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS18760 +0.9 3.7 ribonuclease III compare
CA265_RS20650 +0.9 1.3 hypothetical protein compare
CA265_RS24385 +0.9 2.3 GNAT family N-acetyltransferase compare
CA265_RS12855 +0.9 2.5 hypothetical protein compare
CA265_RS25185 +0.8 1.7 glycine dehydrogenase (aminomethyl-transferring) compare
CA265_RS21000 +0.8 4.0 ribosome silencing factor compare
CA265_RS19025 +0.8 2.9 peptidase M23 compare
CA265_RS01320 +0.8 2.0 hypothetical protein compare
CA265_RS02460 +0.8 1.9 tRNA-Phe compare
CA265_RS24355 +0.7 2.8 transcriptional regulator compare
CA265_RS25435 +0.7 3.2 hypothetical protein compare
CA265_RS18780 +0.7 2.7 YicC family protein compare
CA265_RS03595 +0.7 2.6 hydrolase compare
CA265_RS17290 +0.7 0.9 tRNA-Lys compare
CA265_RS16105 +0.7 1.7 hypothetical protein compare
CA265_RS21670 +0.7 2.1 hypothetical protein compare
CA265_RS23820 +0.7 1.4 hypothetical protein compare
CA265_RS21580 +0.7 2.4 QacE family quaternary ammonium compound efflux SMR transporter compare
CA265_RS00395 +0.6 2.1 hypothetical protein compare
CA265_RS17315 +0.6 1.6 hypothetical protein compare
CA265_RS16995 +0.6 2.3 hypothetical protein compare
CA265_RS20770 +0.6 3.1 hypothetical protein compare
CA265_RS24710 +0.6 1.1 hypothetical protein compare
CA265_RS02315 +0.6 3.3 single-stranded DNA-binding protein compare
CA265_RS21565 +0.6 0.9 cold-shock protein compare
CA265_RS19405 +0.6 2.5 transcriptional regulator compare
CA265_RS17115 +0.6 2.1 arsenate reductase compare
CA265_RS12800 +0.6 2.8 NAD(P)H-dependent oxidoreductase compare
CA265_RS22655 +0.6 2.7 hypothetical protein compare
CA265_RS23705 +0.6 2.7 esterase compare
CA265_RS07295 +0.6 2.9 hypothetical protein compare
CA265_RS24195 +0.6 3.1 TetR family transcriptional regulator compare
CA265_RS01560 +0.6 1.9 circadian clock protein KaiB compare
CA265_RS00025 +0.6 1.6 hypothetical protein compare
CA265_RS18495 +0.5 0.8 hypothetical protein compare
CA265_RS09320 +0.5 1.8 hypothetical protein compare
CA265_RS24965 +0.5 2.2 hypothetical protein compare
CA265_RS08315 +0.5 0.9 tRNA-Lys compare
CA265_RS03125 +0.5 1.1 hypothetical protein compare
CA265_RS01850 +0.5 2.9 hypothetical protein compare
CA265_RS21690 +0.5 2.0 hypothetical protein compare
CA265_RS01150 +0.5 1.8 hypothetical protein compare
CA265_RS03525 +0.5 1.7 hypothetical protein compare
CA265_RS19030 +0.5 2.8 hypothetical protein compare
CA265_RS02745 +0.5 2.5 hypothetical protein compare
CA265_RS23915 +0.5 2.2 G-D-S-L family lipolytic protein compare
CA265_RS23950 +0.5 1.8 ribonuclease HII compare
CA265_RS20695 +0.5 1.6 hypothetical protein compare
CA265_RS18835 +0.5 2.4 ATP-dependent nuclease subunit B compare
CA265_RS19990 +0.5 1.0 YtxH domain-containing protein compare
CA265_RS01100 +0.5 2.9 transcriptional regulator compare
CA265_RS23265 +0.5 1.4 iron-binding protein compare
CA265_RS08785 +0.5 1.4 hypothetical protein compare
CA265_RS09935 +0.5 1.2 hypothetical protein compare
CA265_RS20785 +0.5 1.4 hypothetical protein compare
CA265_RS22965 +0.5 1.9 leucyl/phenylalanyl-tRNA--protein transferase compare
CA265_RS18500 +0.5 2.2 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
CA265_RS23310 +0.5 1.5 polyketide cyclase compare
CA265_RS07880 +0.5 2.7 transcriptional regulator compare
CA265_RS19380 +0.5 2.7 beta-carotene 15,15'-monooxygenase compare
CA265_RS22945 +0.5 1.5 hypothetical protein compare
CA265_RS20440 +0.5 1.7 hypothetical protein compare
CA265_RS01840 +0.5 2.4 hypothetical protein compare
CA265_RS05090 +0.5 2.1 hypothetical protein compare
CA265_RS22790 +0.5 2.8 hypothetical protein compare
CA265_RS01335 +0.5 2.5 pyridoxamine 5'-phosphate oxidase compare
CA265_RS09885 +0.5 1.7 hypothetical protein compare
CA265_RS19140 +0.5 1.0 tRNA-Ile compare
CA265_RS07535 +0.5 1.7 ATPase compare
CA265_RS09045 +0.5 2.7 ABC transporter permease compare
CA265_RS10545 +0.5 1.0 hypothetical protein compare
CA265_RS21620 +0.5 3.0 hybrid sensor histidine kinase/response regulator compare
CA265_RS25255 +0.5 3.1 methyltransferase type 11 compare
CA265_RS17760 +0.5 3.4 hypothetical protein compare
CA265_RS00265 +0.5 1.9 RNA polymerase sigma-70 factor compare
CA265_RS04640 +0.5 2.2 efflux transporter periplasmic adaptor subunit compare
CA265_RS03120 +0.5 2.3 disulfide bond formation protein DsbA compare
CA265_RS22290 +0.4 2.0 NADPH quinone reductase MdaB compare
CA265_RS05575 +0.4 1.1 hypothetical protein compare
CA265_RS04335 +0.4 3.0 hypothetical protein compare
CA265_RS14845 +0.4 3.4 transcriptional regulator compare
CA265_RS22365 +0.4 2.2 DNA-binding response regulator compare
CA265_RS11995 +0.4 1.7 RNA polymerase subunit sigma compare
CA265_RS08445 +0.4 0.6 endonuclease compare
CA265_RS14570 +0.4 1.8 aminoacyl-tRNA hydrolase compare
CA265_RS24025 +0.4 2.1 hypothetical protein compare
CA265_RS19680 +0.4 2.3 DNA-binding transcriptional regulator OxyR compare
CA265_RS02550 +0.4 1.0 tRNA-Phe compare
CA265_RS17955 +0.4 3.1 hypothetical protein compare
CA265_RS18770 +0.4 2.1 hypothetical protein compare
CA265_RS01195 +0.4 1.6 hypothetical protein compare
CA265_RS18845 +0.4 1.7 GNAT family N-acetyltransferase compare
CA265_RS15035 +0.4 1.4 prevent-host-death protein compare
CA265_RS06275 +0.4 3.2 aspartate kinase compare
CA265_RS12745 +0.4 2.0 NUDIX hydrolase compare
CA265_RS07710 +0.4 1.2 Holliday junction branch migration DNA helicase RuvB compare
CA265_RS02760 +0.4 1.1 hypothetical protein compare
CA265_RS20965 +0.4 1.3 5'(3')-deoxyribonucleotidase compare
CA265_RS01175 +0.4 1.8 hypothetical protein compare
CA265_RS19965 +0.4 1.5 hypothetical protein compare
CA265_RS10480 +0.4 1.7 hypothetical protein compare
CA265_RS08875 +0.4 1.9 tetratricopeptide repeat protein compare
CA265_RS18985 +0.4 2.3 hypothetical protein compare
CA265_RS20375 +0.4 1.9 methyltransferase compare
CA265_RS25440 +0.4 2.3 capsular biosynthesis protein compare
CA265_RS14070 +0.4 2.7 hypothetical protein compare
CA265_RS25460 +0.4 2.2 methylmalonyl-CoA mutase compare
CA265_RS19940 +0.4 3.3 hypothetical protein compare
CA265_RS04295 +0.4 0.6 transcriptional regulator compare
CA265_RS02655 +0.4 1.3 hypothetical protein compare
CA265_RS11935 +0.4 1.5 hypothetical protein compare
CA265_RS10000 +0.4 0.7 nitrite reductase small subunit compare
CA265_RS10170 +0.4 1.8 hypothetical protein compare
CA265_RS15530 +0.4 1.5 septal ring lytic transglycosylase RlpA family lipoprotein compare
CA265_RS16945 +0.4 0.9 hypothetical protein compare
CA265_RS09195 +0.4 2.5 Fis family transcriptional regulator compare
CA265_RS18185 +0.4 1.7 heme oxygenase compare
CA265_RS04040 +0.4 1.0 hypothetical protein compare
CA265_RS18115 +0.4 2.3 gliding motility protein GldN compare
CA265_RS00285 +0.4 2.0 hypothetical protein compare
CA265_RS03375 +0.4 2.3 tRNA hydroxylase compare
CA265_RS09120 +0.4 2.8 hypothetical protein compare
CA265_RS18260 +0.4 0.6 hypothetical protein compare
CA265_RS04780 +0.4 1.4 polyketide cyclase compare
CA265_RS11125 +0.4 1.3 hypothetical protein compare
CA265_RS19465 +0.4 1.5 protein tyrosine phosphatase compare
CA265_RS25160 +0.4 1.6 glycosyl transferase family 2 compare
CA265_RS02160 +0.4 2.6 hypothetical protein compare
CA265_RS00925 +0.4 1.6 hypothetical protein compare
CA265_RS20475 +0.4 1.9 hypothetical protein compare
CA265_RS22355 +0.4 1.8 translation initiation factor compare
CA265_RS05765 +0.4 1.5 hypothetical protein compare
CA265_RS22490 +0.4 1.2 MarR family transcriptional regulator compare
CA265_RS14825 +0.4 0.9 outer membrane protein assembly factor BamD compare
CA265_RS13950 +0.4 2.1 TspO protein compare
CA265_RS18945 +0.4 2.2 LacI family transcriptional regulator compare
CA265_RS03540 +0.4 2.2 hypothetical protein compare
CA265_RS21115 +0.4 1.8 hypothetical protein compare
CA265_RS13500 +0.4 0.9 hypothetical protein compare
CA265_RS03450 +0.4 1.6 hypothetical protein compare
CA265_RS20275 +0.4 2.0 LD-carboxypeptidase compare
CA265_RS19485 +0.4 1.0 hypothetical protein compare
CA265_RS18875 +0.4 2.3 hypothetical protein compare
CA265_RS22750 +0.4 1.4 hypothetical protein compare
CA265_RS11925 +0.4 1.6 hypothetical protein compare
CA265_RS10985 +0.4 1.6 hypothetical protein compare
CA265_RS22310 +0.4 1.4 superoxide dismutase compare
CA265_RS03205 +0.4 1.8 AraC family transcriptional regulator compare
CA265_RS24480 +0.4 1.3 hypothetical protein compare
CA265_RS09340 +0.4 1.6 coproporphyrinogen III oxidase compare
CA265_RS04635 +0.4 3.0 CusA/CzcA family heavy metal efflux RND transporter compare
CA265_RS11800 +0.4 2.2 hypothetical protein compare
CA265_RS16985 +0.4 0.7 hypothetical protein compare
CA265_RS04445 +0.4 1.2 hypothetical protein compare
CA265_RS21750 +0.4 1.1 hypothetical protein compare
CA265_RS01200 +0.4 1.4 hypothetical protein compare
CA265_RS24845 +0.4 1.3 STAS/SEC14 domain-containing protein compare
CA265_RS04645 +0.4 2.1 cation transporter compare
CA265_RS03605 +0.4 1.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
CA265_RS04330 +0.4 1.3 transcriptional regulator compare
CA265_RS23835 +0.4 1.5 hypothetical protein compare
CA265_RS17085 +0.3 1.7 hypothetical protein compare
CA265_RS04510 +0.3 1.7 hypothetical protein compare
CA265_RS07695 +0.3 2.0 tRNA epoxyqueuosine(34) reductase QueG compare
CA265_RS06710 +0.3 2.0 hypothetical protein compare
CA265_RS14345 +0.3 1.3 hypothetical protein compare
CA265_RS10980 +0.3 2.0 histidine kinase compare
CA265_RS22635 +0.3 0.6 phosphoserine phosphatase (EC 3.1.3.3) (from data) compare
CA265_RS16940 +0.3 1.6 plasmid stabilization system protein compare
CA265_RS12200 +0.3 2.0 hypothetical protein compare
CA265_RS01625 +0.3 2.3 hypothetical protein compare
CA265_RS07515 +0.3 2.3 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS18535 +0.3 1.4 four helix bundle protein compare
CA265_RS09920 +0.3 1.6 protein tyrosine phosphatase compare
CA265_RS22145 +0.3 1.4 hypothetical protein compare
CA265_RS23145 +0.3 0.9 hypothetical protein compare
CA265_RS21865 +0.3 2.2 two-component sensor histidine kinase compare
CA265_RS00610 +0.3 1.8 hypothetical protein compare
CA265_RS06250 +0.3 0.6 RNA polymerase subunit sigma-70 compare
CA265_RS24815 +0.3 1.2 hypothetical protein compare
CA265_RS22800 +0.3 2.2 glycosyl transferase compare
CA265_RS12475 +0.3 1.2 hypothetical protein compare
CA265_RS21355 +0.3 1.0 hypothetical protein compare
CA265_RS04290 +0.3 1.1 hypothetical protein compare
CA265_RS04790 +0.3 1.1 hypothetical protein compare
CA265_RS23960 +0.3 0.7 glycine cleavage system protein T compare
CA265_RS08325 +0.3 2.0 haloacid dehalogenase compare
CA265_RS02565 +0.3 1.3 hypothetical protein compare
CA265_RS23685 +0.3 1.6 hypothetical protein compare
CA265_RS18270 +0.3 1.5 hypothetical protein compare
CA265_RS24230 +0.3 2.2 RNA polymerase sigma factor compare
CA265_RS24050 +0.3 1.3 DNA-binding protein compare
CA265_RS00200 +0.3 1.0 N-acetyltransferase compare
CA265_RS19665 +0.3 0.7 cysteine methyltransferase compare
CA265_RS07245 +0.3 1.2 hypothetical protein compare
CA265_RS02045 +0.3 0.5 hypothetical protein compare
CA265_RS15615 +0.3 1.1 malate dehydrogenase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium nitrite in Pedobacter sp. GW460-11-11-14-LB5

For stress Sodium nitrite across organisms