Experiment set1IT056 for Methanococcus maripaludis JJ

Compare to:

Formate pooled triplicate planktonic cells

200 most important genes:

  gene name fitness t score description  
MMJJ_RS04200 -5.5 -9.8 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS07360 -5.0 -3.2 TIGR00269 family protein compare
MMJJ_RS01935 -4.6 -6.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS09190 -4.6 -2.8 tryptophan synthase subunit beta compare
MMJJ_RS06855 -4.4 -2.7 DUF2104 domain-containing protein compare
MMJJ_RS00210 -4.4 -4.6 DUF530 family protein compare
MMJJ_RS03840 -4.1 -4.8 DHH family phosphoesterase compare
MMJJ_RS03190 -4.0 -2.7 phosphopyruvate hydratase compare
MMJJ_RS07655 -4.0 -17.3 hypothetical protein compare
MMJJ_RS02920 -3.9 -4.5 30S ribosomal protein S27ae compare
MMJJ_RS01755 -3.9 -2.6 ferrous iron transport protein B compare
MMJJ_RS07665 -3.8 -25.8 formate dehydrogenase subunit alpha compare
MMJJ_RS05650 -3.8 -4.4 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS07350 -3.8 -7.0 4Fe-4S binding protein compare
MMJJ_RS06910 -3.8 -5.6 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS08625 -3.8 -10.8 magnesium/cobalt transporter CorA compare
MMJJ_RS03620 -3.7 -8.1 DUF2097 domain-containing protein compare
MMJJ_RS06110 -3.6 -4.8 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS06040 -3.6 -5.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08850 -3.6 -4.7 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS05490 -3.6 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS01415 -3.5 -3.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS07670 -3.4 -18.2 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS04155 -3.4 -10.2 hypothetical protein compare
MMJJ_RS01870 -3.4 -4.5 methanogenesis marker 15 protein compare
MMJJ_RS05610 -3.4 -5.5 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS00580 -3.4 -2.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS08660 -3.3 -4.9 acetylornithine transaminase compare
MMJJ_RS04655 -3.3 -8.1 FAD-dependent oxidoreductase compare
MMJJ_RS00450 -3.3 -3.7 DUF126 domain-containing protein compare
MMJJ_RS06250 -3.2 -3.7 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS03760 -3.2 -5.9 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS09375 -3.2 -3.4 hypothetical protein compare
MMJJ_RS08005 -3.2 -17.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS04970 -3.2 -3.7 DUF655 domain-containing protein compare
MMJJ_RS08855 -3.1 -6.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS07950 -3.1 -5.3 4Fe-4S binding protein compare
MMJJ_RS03615 -3.1 -5.1 cobalt-precorrin-8 methylmutase compare
MMJJ_RS08320 -3.1 -4.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS00270 -3.1 -4.5 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS06725 -3.0 -16.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS03820 -3.0 -4.4 hydrogenase formation protein HypD compare
MMJJ_RS08080 -3.0 -11.4 TIGR00300 family protein compare
MMJJ_RS04800 -3.0 -9.5 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS06155 -3.0 -8.6 phosphatidylglycerophosphatase A compare
MMJJ_RS06510 -3.0 -3.9 LL-diaminopimelate aminotransferase compare
MMJJ_RS03580 -2.9 -4.7 TIGR00303 family protein compare
MMJJ_RS03110 -2.9 -5.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS05620 -2.9 -6.7 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05720 -2.9 -2.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS00215 -2.9 -3.7 CCA tRNA nucleotidyltransferase compare
MMJJ_RS08055 -2.9 -9.3 methanogenesis marker 14 protein compare
MMJJ_RS08840 -2.8 -6.3 calcium/sodium antiporter compare
MMJJ_RS06915 -2.8 -14.4 helix-turn-helix domain-containing protein compare
MMJJ_RS05330 -2.8 -3.7 DNA polymerase II large subunit compare
MMJJ_RS04485 -2.8 -10.9 riboflavin synthase compare
MMJJ_RS06390 -2.8 -3.2 NADPH-dependent F420 reductase compare
MMJJ_RS01350 -2.8 -8.8 sodium:proton antiporter compare
MMJJ_RS06860 -2.8 -4.6 hypothetical protein compare
MMJJ_RS08795 -2.8 -3.6 phosphoglucosamine mutase compare
MMJJ_RS03170 -2.8 -7.9 DUF5612 domain-containing protein compare
MMJJ_RS00205 -2.8 -5.8 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS00275 -2.8 -3.2 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06485 -2.8 -4.7 phosphoglycerate kinase compare
MMJJ_RS05260 -2.8 -8.1 ATP-grasp domain-containing protein compare
MMJJ_RS02055 -2.8 -14.6 GTP 3',8-cyclase MoaA compare
MMJJ_RS05590 -2.8 -2.4 homoserine dehydrogenase compare
MMJJ_RS03865 -2.8 -3.6 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS03670 -2.8 -6.9 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS08095 -2.7 -6.5 cobyric acid synthase CobQ compare
MMJJ_RS04685 -2.7 -11.3 carbamoyltransferase HypF compare
MMJJ_RS06255 -2.7 -8.4 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS06700 -2.7 -6.2 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS03005 -2.7 -3.9 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS06625 -2.7 -2.9 pyruvate synthase subunit PorB compare
MMJJ_RS03150 -2.6 -7.8 2-phospho-L-lactate transferase compare
MMJJ_RS06490 -2.6 -3.9 methanogenesis marker 2 protein compare
MMJJ_RS05950 -2.6 -5.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS00550 -2.6 -9.7 AIR synthase-related protein compare
MMJJ_RS06220 -2.6 -7.5 polyamine aminopropyltransferase compare
MMJJ_RS07000 -2.6 -2.8 TrkH family potassium uptake protein compare
MMJJ_RS05380 -2.6 -2.5 hypothetical protein compare
MMJJ_RS01200 -2.5 -3.6 PRC-barrel domain-containing protein compare
MMJJ_RS05415 -2.5 -3.5 hypothetical protein compare
MMJJ_RS03815 -2.5 -4.2 nascent polypeptide-associated complex protein compare
MMJJ_RS02045 -2.5 -4.3 molybdenum cofactor guanylyltransferase compare
MMJJ_RS02200 -2.5 -12.8 chorismate pyruvate-lyase family protein compare
MMJJ_RS06840 -2.5 -4.3 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03200 -2.5 -3.2 uroporphyrinogen-III synthase compare
MMJJ_RS06215 -2.5 -5.7 agmatinase compare
MMJJ_RS03875 -2.5 -5.6 CBS domain-containing protein compare
MMJJ_RS08620 -2.5 -5.5 DUF373 family protein compare
MMJJ_RS04790 -2.5 -5.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS00355 -2.5 -3.8 ribonuclease P protein component 4 compare
MMJJ_RS07995 -2.4 -9.4 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS08155 -2.4 -5.6 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS03270 -2.4 -1.6 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS05575 -2.4 -5.3 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS05445 -2.4 -3.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS08000 -2.4 -12.8 HesA/MoeB/ThiF family protein compare
MMJJ_RS03785 -2.4 -4.0 hypothetical protein compare
MMJJ_RS03060 -2.4 -3.5 methanogenesis marker 7 protein compare
MMJJ_RS04520 -2.4 -6.4 coenzyme F430 synthase compare
MMJJ_RS09175 -2.4 -1.7 anthranilate synthase component I compare
MMJJ_RS01345 -2.4 -4.7 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS04730 -2.4 -3.7 tyrosine decarboxylase MfnA compare
MMJJ_RS07660 -2.4 -11.2 carbonic anhydrase compare
MMJJ_RS01355 -2.4 -4.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS00125 -2.4 -3.6 KEOPS complex subunit Cgi121 compare
MMJJ_RS06180 -2.4 -4.7 tryptophan--tRNA ligase compare
MMJJ_RS06175 -2.4 -2.7 DUF1743 domain-containing protein compare
MMJJ_RS07720 -2.3 -3.7 UPF0058 family protein compare
MMJJ_RS06905 -2.3 -3.6 hypothetical protein compare
MMJJ_RS04995 -2.3 -7.5 Tfx family DNA-binding protein compare
MMJJ_RS01865 -2.3 -8.8 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS09135 -2.3 -10.8 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS04700 -2.3 -8.0 deoxyhypusine synthase compare
MMJJ_RS02275 -2.3 -4.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS07245 -2.3 -6.2 amidohydrolase family protein compare
MMJJ_RS06225 -2.3 -3.2 adenosylmethionine decarboxylase compare
MMJJ_RS04505 -2.3 -7.5 CDC48 family AAA ATPase compare
MMJJ_RS05935 -2.3 -3.2 Era-like GTP-binding protein compare
MMJJ_RS04980 -2.3 -5.6 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS07725 -2.3 -7.0 DNA primase DnaG compare
MMJJ_RS05655 -2.2 -6.2 HisA/HisF family protein compare
MMJJ_RS07275 -2.2 -3.7 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS01360 -2.2 -2.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS04475 -2.2 -5.6 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS02090 -2.2 -5.5 tyramine--L-glutamate ligase compare
MMJJ_RS04150 -2.2 -6.0 DUF5379 domain-containing protein compare
MMJJ_RS06705 -2.2 -5.8 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS06875 -2.2 -3.2 hypothetical protein compare
MMJJ_RS07810 -2.2 -11.3 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS02040 -2.2 -2.9 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS05190 -2.2 -8.8 gamma carbonic anhydrase family protein compare
MMJJ_RS05930 -2.2 -2.7 cell division protein SepF compare
MMJJ_RS05810 -2.2 -7.0 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS07345 -2.2 -6.9 homocysteine biosynthesis protein compare
MMJJ_RS06185 -2.1 -4.6 cobalamin biosynthesis protein compare
MMJJ_RS07410 -2.1 -5.5 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS01690 -2.1 -3.3 methanogenesis marker 12 protein compare
MMJJ_RS07785 -2.1 -3.7 fumarate reductase subunit A compare
MMJJ_RS03125 -2.1 -5.6 GMC oxidoreductase compare
MMJJ_RS04670 -2.1 -4.9 DUF2117 domain-containing protein compare
MMJJ_RS07815 -2.1 -14.8 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS04110 -2.1 -6.0 hypothetical protein compare
MMJJ_RS05295 -2.1 -10.3 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS07640 -2.1 -16.5 cache domain-containing protein compare
MMJJ_RS01810 -2.1 -3.1 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS00475 -2.1 -3.3 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS01750 -2.0 -2.9 ferrous iron transport protein A compare
MMJJ_RS07470 -2.0 -2.0 50S ribosome-binding GTPase compare
MMJJ_RS03660 -2.0 -4.4 DUF447 family protein compare
MMJJ_RS07635 -2.0 -10.1 response regulator transcription factor compare
MMJJ_RS03310 -2.0 -4.6 hypothetical protein compare
MMJJ_RS01880 -2.0 -3.2 RlmE family RNA methyltransferase compare
MMJJ_RS01875 -2.0 -7.3 global nitrogen regulator NrpR compare
MMJJ_RS03895 -2.0 -3.6 hydrogenase expression/formation protein HypE compare
MMJJ_RS00425 -2.0 -5.8 hypothetical protein compare
MMJJ_RS07155 -2.0 -9.3 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS08010 -2.0 -8.2 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS07430 -1.9 -4.4 ribonuclease VapC compare
MMJJ_RS00570 -1.9 -1.6 ribonuclease P compare
MMJJ_RS07265 -1.9 -9.8 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS07705 -1.9 -4.1 GTP-binding protein EngB compare
MMJJ_RS08340 -1.9 -5.0 archaeoflavoprotein AfpA compare
MMJJ_RS01600 -1.9 -3.1 radical SAM protein compare
MMJJ_RS04565 -1.9 -3.5 sirohydrochlorin nickelochelatase compare
MMJJ_RS02935 -1.9 -5.6 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS07805 -1.9 -11.3 ferredoxin family protein compare
MMJJ_RS07650 -1.9 -13.5 formate/nitrite transporter family protein compare
MMJJ_RS03230 -1.9 -4.6 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS06565 -1.9 -8.1 segregation/condensation protein A compare
MMJJ_RS08535 -1.8 -3.7 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS04145 -1.8 -8.2 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS08020 -1.8 -9.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS01860 -1.8 -11.5 tRNA guanosine(15) transglycosylase TgtA compare
MMJJ_RS04675 -1.8 -5.9 thiamine pyrophosphate-binding protein compare
MMJJ_RS05155 -1.8 -4.6 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06760 -1.8 -4.7 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS07035 -1.8 -2.9 glycosyl transferase compare
MMJJ_RS03095 -1.8 -3.3 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS05995 -1.8 -2.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS03065 -1.8 -10.9 CBS domain-containing protein compare
MMJJ_RS06240 -1.8 -3.3 dihydropteroate synthase-like protein compare
MMJJ_RS02190 -1.7 -11.0 molybdopterin biosynthesis protein compare
MMJJ_RS04985 -1.7 -2.5 glutamyl-tRNA reductase compare
MMJJ_RS05780 -1.7 -2.8 flagellin compare
MMJJ_RS03765 -1.7 -7.5 hypothetical protein compare
MMJJ_RS08330 -1.7 -3.1 SufD family Fe-S cluster assembly protein compare
MMJJ_RS06380 -1.7 -3.0 signal recognition particle protein Srp54 compare
MMJJ_RS08230 -1.7 -2.8 ribose-5-phosphate isomerase RpiA compare
MMJJ_RS00480 -1.7 -11.2 flippase compare
MMJJ_RS06940 -1.7 -10.6 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS06050 -1.7 -7.4 molybdopterin molybdotransferase MoeA compare
MMJJ_RS08250 -1.7 -6.8 hydrogenase maturation peptidase HycI compare
MMJJ_RS04050 -1.7 -2.8 dihydroneopterin aldolase family protein compare
MMJJ_RS01410 -1.7 -4.3 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS00360 -1.7 -3.2 adenosylhomocysteinase compare
MMJJ_RS00040 -1.7 -8.5 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare


Specific Phenotypes

For 2 genes in this experiment