Experiment set1IT054 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Nickel (II) chloride hexahydrate 0.3125 mM

Group: stress
Media: R2A + Nickel (II) chloride hexahydrate (0.3125 mM)
Culturing: rhodanobacter_10B01_ML12, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Trenton on 01/24/2021
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate

Specific Phenotypes

For 13 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Rhodanobacter denitrificans FW104-10B01

For stress Nickel (II) chloride hexahydrate across organisms

SEED Subsystems

Subsystem #Specific
Cobalt-zinc-cadmium resistance 2
Copper homeostasis 1
Fatty Acid Biosynthesis FASII 1
Mercury resistance operon 1
Queuosine-Archaeosine Biosynthesis 1
Terminal cytochrome C oxidases 1
mycolic acid synthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
arsenite to oxygen electron transfer 2 1 1
arsenite to oxygen electron transfer (via azurin) 3 1 1
gondoate biosynthesis (anaerobic) 4 4 1
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) 12 9 3
aerobic respiration I (cytochrome c) 4 3 1
aerobic respiration II (cytochrome c) (yeast) 4 2 1
palmitate biosynthesis III 29 21 7
tetradecanoate biosynthesis (mitochondria) 25 17 6
palmitate biosynthesis II (type II fatty acid synthase) 31 29 7
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 9 8 2
oleate biosynthesis IV (anaerobic) 14 13 3
superpathway of fatty acids biosynthesis (E. coli) 53 49 11
superpathway of unsaturated fatty acids biosynthesis (E. coli) 20 18 4
fatty acid elongation -- saturated 5 4 1
cis-vaccenate biosynthesis 5 4 1
8-amino-7-oxononanoate biosynthesis IV 5 4 1
superpathway of fatty acid biosynthesis II (plant) 43 38 8
8-amino-7-oxononanoate biosynthesis I 11 10 2
anteiso-branched-chain fatty acid biosynthesis 34 24 6
even iso-branched-chain fatty acid biosynthesis 34 24 6
odd iso-branched-chain fatty acid biosynthesis 34 24 6
(5Z)-dodecenoate biosynthesis I 6 6 1
stearate biosynthesis II (bacteria and plants) 6 5 1
(5Z)-dodecenoate biosynthesis II 6 5 1
stearate biosynthesis IV 6 4 1
petroselinate biosynthesis 6 2 1
Fe(II) oxidation 6 2 1
streptorubin B biosynthesis 34 20 5
biotin biosynthesis I 15 14 2
superpathway of fatty acid biosynthesis I (E. coli) 16 14 2
2-allylmalonyl-CoA biosynthesis 8 2 1
mycolate biosynthesis 205 20 5
superpathway of mycolate biosynthesis 239 21 5