Experiment set1IT054 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
AO353_24130 -6.1 -4.2 hypothetical protein compare
AO353_07230 -4.8 -16.1 anthranilate synthase compare
AO353_12090 -4.7 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20635 -4.6 -14.0 3-isopropylmalate dehydrogenase compare
AO353_12365 -4.6 -4.5 phosphoribosyl-AMP cyclohydrolase compare
AO353_20695 -4.5 -7.5 O-succinylhomoserine sulfhydrylase compare
AO353_05115 -4.5 -11.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12085 -4.4 -8.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20625 -4.4 -5.2 3-isopropylmalate dehydratase compare
AO353_07220 -4.3 -9.5 anthranilate synthase compare
AO353_12070 -4.3 -11.0 imidazoleglycerol-phosphate dehydratase compare
AO353_08685 -4.3 -9.5 N-acetylglutamate synthase compare
AO353_02075 -4.2 -12.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_12115 -4.2 -4.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12075 -4.2 -9.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_20620 -4.2 -8.9 isopropylmalate isomerase compare
AO353_08180 -4.2 -14.9 homoserine O-acetyltransferase compare
AO353_12515 -4.2 -24.8 glutamate synthase compare
AO353_08185 -4.1 -12.5 methionine biosynthesis protein MetW compare
AO353_13070 -4.1 -10.2 phosphoserine phosphatase compare
AO353_14505 -4.1 -14.6 ketol-acid reductoisomerase compare
AO353_20665 -4.1 -12.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_05110 -4.1 -13.2 histidinol dehydrogenase compare
AO353_05485 -4.0 -11.0 Fructose-specific PTS system, I, HPr, and IIA components (from data) conserved
AO353_12520 -4.0 -14.6 glutamate synthase compare
AO353_20540 -4.0 -9.9 aromatic amino acid aminotransferase compare
AO353_02070 -3.9 -10.0 prephenate dehydratase compare
AO353_09240 -3.9 -4.6 acetylglutamate kinase compare
AO353_13165 -3.9 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_14495 -3.8 -13.9 acetolactate synthase 3 catalytic subunit compare
AO353_12500 -3.8 -2.6 shikimate kinase compare
AO353_10025 -3.7 -18.1 pyruvate carboxylase subunit B compare
AO353_00310 -3.7 -12.5 transaldolase compare
AO353_06495 -3.7 -7.0 gamma-glutamyl phosphate reductase compare
AO353_10670 -3.7 -10.0 shikimate dehydrogenase compare
AO353_05475 -3.6 -17.4 PTS fructose transporter subunit IIBC conserved
AO353_07155 -3.6 -10.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10710 -3.6 -6.5 tryptophan synthase subunit beta compare
AO353_08345 -3.5 -12.1 dihydroxy-acid dehydratase compare
AO353_07210 -3.5 -8.0 indole-3-glycerol-phosphate synthase compare
AO353_09000 -3.4 -8.1 argininosuccinate lyase compare
AO353_04105 -3.4 -11.8 argininosuccinate synthase compare
AO353_10030 -3.3 -13.1 pyruvate carboxylase subunit A compare
AO353_14500 -3.3 -9.5 acetolactate synthase 3 regulatory subunit compare
AO353_10035 -3.3 -10.8 LysR family transcriptional regulator compare
AO353_04155 -3.2 -14.3 ornithine carbamoyltransferase compare
AO353_07215 -3.1 -7.8 anthranilate phosphoribosyltransferase compare
AO353_02685 -3.0 -5.8 phosphoribosylglycinamide formyltransferase compare
AO353_08510 -3.0 -7.5 3-phosphoglycerate dehydrogenase compare
AO353_20175 -3.0 -5.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_22800 -2.9 -3.8 sulfite reductase compare
AO353_12360 -2.9 -11.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_01550 -2.8 -8.6 hypothetical protein compare
AO353_08475 -2.8 -11.2 phosphoserine phosphatase compare
AO353_03360 -2.8 -11.4 glucose-6-phosphate dehydrogenase compare
AO353_14115 -2.8 -8.5 gamma-glutamyl kinase compare
AO353_19060 -2.7 -7.1 CysB family transcriptional regulator compare
AO353_14370 -2.7 -7.8 glucose-6-phosphate isomerase compare
AO353_08015 -2.7 -9.6 5,10-methylenetetrahydrofolate reductase compare
AO353_15925 -2.7 -10.7 2-isopropylmalate synthase compare
AO353_08165 -2.3 -4.0 pyrroline-5-carboxylate reductase compare
AO353_14420 -2.3 -5.8 molecular chaperone DnaK compare
AO353_06050 -2.3 -8.8 exodeoxyribonuclease V subunit gamma compare
AO353_03580 -2.2 -5.0 ATP-dependent DNA helicase RuvB compare
AO353_11850 -2.2 -4.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_02250 -2.1 -3.3 chorismate synthase compare
AO353_10705 -2.0 -3.9 tryptophan synthase subunit alpha compare
AO353_15295 -1.9 -6.0 division/cell wall cluster transcriptional repressor MraZ compare
AO353_03615 -1.9 -4.7 cold-shock protein compare
AO353_03425 -1.9 -9.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_13140 -1.9 -7.1 tRNA dimethylallyltransferase compare
AO353_06045 -1.8 -8.1 exodeoxyribonuclease V subunit beta compare
AO353_03420 -1.8 -5.1 phosphogluconate dehydratase compare
AO353_03590 -1.8 -4.6 crossover junction endodeoxyribonuclease RuvC compare
AO353_06040 -1.8 -4.5 exodeoxyribonuclease V subunit alpha compare
AO353_07075 -1.8 -6.1 elongation factor Tu compare
AO353_11165 -1.7 -10.1 hypothetical protein compare
AO353_13200 -1.7 -10.9 exoribonuclease R compare
AO353_00825 -1.6 -4.2 porin compare
AO353_05690 -1.5 -4.1 SsrA-binding protein compare
AO353_04355 -1.5 -2.7 homoserine dehydrogenase compare
AO353_14400 -1.5 -4.7 Fis family transcriptional regulator compare
AO353_00490 -1.5 -3.8 PasA protein compare
AO353_08780 -1.5 -5.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_14990 -1.4 -2.9 hypothetical protein compare
AO353_04175 -1.4 -5.1 glycerol uptake facilitator GlpF compare
AO353_07515 -1.4 -2.5 transporter compare
AO353_19030 -1.4 -6.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_03020 -1.3 -6.4 arginine N-succinyltransferase compare
AO353_14595 -1.3 -7.5 carbonate dehydratase compare
AO353_08265 -1.3 -5.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_05075 -1.2 -8.1 adenylylsulfate kinase compare
AO353_23495 -1.2 -3.3 SAM-dependent methyltransferase compare
AO353_01080 -1.2 -7.9 hypothetical protein compare
AO353_03585 -1.2 -2.4 ATP-dependent DNA helicase RuvA compare
AO353_18780 -1.2 -5.8 cobyrinic acid a,c-diamide synthase compare
AO353_07105 -1.2 -1.8 biotin--protein ligase compare
AO353_03775 -1.2 -6.4 pyruvate kinase compare
AO353_27650 -1.2 -4.4 cell division protein FtsK compare
AO353_27685 -1.2 -4.4 cold-shock protein compare
AO353_10040 -1.1 -6.3 transcriptional regulator compare
AO353_13100 -1.1 -1.8 GTPase RsgA compare
AO353_00750 -1.1 -3.4 GntR family transcriptional regulator compare
AO353_08045 -1.1 -8.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_16805 -1.1 -5.1 recombinase RecA compare
AO353_06720 -1.1 -1.5 NrdR family transcriptional regulator compare
AO353_15725 -1.1 -3.3 hypothetical protein compare
AO353_04565 -1.1 -4.9 nucleoid-associated protein compare
AO353_07315 -1.1 -2.4 rRNA methyltransferase compare
AO353_08885 -1.1 -8.6 polyphosphate kinase compare
AO353_05080 -1.1 -7.3 sulfate adenylyltransferase compare
AO353_16940 -1.0 -4.1 deoxycytidine triphosphate deaminase compare
AO353_03430 -1.0 -3.3 methylglyoxal synthase compare
AO353_12345 -1.0 -2.2 twin-arginine protein translocation system subunit TatC compare
AO353_17410 -1.0 -2.3 arylsulfate sulfotransferase compare
AO353_12145 -1.0 -3.8 nitrogen regulation protein NR(I) compare
AO353_09050 -1.0 -3.0 recombinase XerC compare
AO353_03015 -1.0 -3.7 arginine N-succinyltransferase compare
AO353_11530 -1.0 -6.3 diguanylate cyclase compare
AO353_17850 -1.0 -3.0 SAM-dependent methyltransferase compare
AO353_02720 -1.0 -4.5 cysteine synthase compare
AO353_00810 -1.0 -2.8 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_03025 -1.0 -4.2 acetylornithine aminotransferase compare
AO353_03630 -1.0 -7.2 porin compare
AO353_19090 -0.9 -2.1 MarR family transcriptional regulator compare
AO353_11770 -0.9 -1.8 molecular chaperone Hsp33 compare
AO353_21640 -0.9 -2.2 cobalt transporter compare
AO353_08485 -0.9 -7.0 threonine dehydratase compare
AO353_02005 -0.9 -1.7 hypothetical protein compare
AO353_07520 -0.9 -6.5 8-amino-7-oxononanoate synthase compare
AO353_05800 -0.9 -3.9 hypothetical protein compare
AO353_16450 -0.9 -6.7 protein-PII uridylyltransferase compare
AO353_11775 -0.9 -4.7 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_13640 -0.8 -2.8 histidine kinase compare
AO353_13245 -0.8 -4.3 hypothetical protein compare
AO353_20300 -0.8 -5.3 anti-sigma factor compare
AO353_27950 -0.8 -2.1 hypothetical protein compare
AO353_01975 -0.8 -4.5 glycosyl transferase compare
AO353_12080 -0.8 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_03715 -0.8 -1.7 H-NS histone compare
AO353_14585 -0.8 -3.5 ribosomal-protein-alanine acetyltransferase compare
AO353_13225 -0.8 -2.6 50S ribosomal protein L9 compare
AO353_16440 -0.8 -2.5 ArsC family transcriptional regulator compare
AO353_02060 -0.8 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_22195 -0.8 -1.8 metal ABC transporter permease compare
AO353_21100 -0.8 -1.9 DNA-binding protein compare
AO353_07895 -0.8 -2.3 fructose-bisphosphate aldolase compare
AO353_24535 -0.8 -1.9 hypothetical protein compare
AO353_08620 -0.8 -1.7 hypothetical protein compare
AO353_05010 -0.8 -1.6 HopJ type III effector protein compare
AO353_26090 -0.8 -1.3 hypothetical protein compare
AO353_16810 -0.8 -2.3 recombinase RecX compare
AO353_27660 -0.8 -2.3 leucyl/phenylalanyl-tRNA--protein transferase compare
AO353_20095 -0.7 -3.2 histidine kinase compare
AO353_27665 -0.7 -4.4 arginyl-tRNA-protein transferase compare
AO353_03710 -0.7 -2.3 formyltetrahydrofolate deformylase compare
AO353_02975 -0.7 -2.4 aspartate kinase compare
AO353_27550 -0.7 -1.4 hypothetical protein compare
AO353_05105 -0.7 -5.3 histidinol-phosphate aminotransferase compare
AO353_05625 -0.7 -1.0 transcription elongation factor GreA compare
AO353_29165 -0.7 -1.7 fructose-bisphosphate aldolase compare
AO353_10455 -0.7 -1.2 tRNA modification GTPase MnmE compare
AO353_07325 -0.7 -1.2 diadenosine tetraphosphatase compare
AO353_02810 -0.7 -4.4 histidine kinase compare
AO353_11730 -0.7 -4.8 glutamate--cysteine ligase compare
AO353_17475 -0.7 -3.1 hypothetical protein compare
AO353_11455 -0.7 -1.8 hypothetical protein compare
AO353_13460 -0.7 -2.1 phosphate starvation-inducible protein PsiF compare
AO353_14395 -0.7 -2.7 poly(A) polymerase compare
AO353_04220 -0.7 -3.4 chemotaxis protein CheY compare
AO353_02000 -0.7 -2.3 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_02040 -0.7 -2.0 integration host factor subunit beta compare
AO353_26830 -0.7 -2.6 histidine kinase compare
AO353_08505 -0.7 -5.0 FAD-linked oxidase compare
AO353_27855 -0.7 -1.6 MarR family transcriptional regulator compare
AO353_19760 -0.7 -2.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_09405 -0.7 -2.8 type VI secretion protein compare
AO353_20170 -0.7 -2.8 trigger factor compare
AO353_18715 -0.7 -1.2 histidine kinase compare
AO353_17165 -0.7 -2.1 ATP-dependent helicase compare
AO353_15555 -0.7 -2.8 fumarylacetoacetase compare
AO353_25220 -0.7 -2.4 hypothetical protein compare
AO353_22680 -0.7 -3.9 aldehyde dehydrogenase compare
AO353_17750 -0.7 -1.4 transcriptional regulator compare
AO353_04665 -0.6 -4.6 ATPase compare
AO353_04180 -0.6 -4.3 glycerol kinase compare
AO353_25015 -0.6 -2.4 polyketide cyclase compare
AO353_24415 -0.6 -1.8 glutamine ABC transporter ATP-binding protein compare
AO353_19300 -0.6 -2.8 exonuclease compare
AO353_21735 -0.6 -2.9 IclR family transcriptional regulator compare
AO353_07510 -0.6 -4.4 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_09885 -0.6 -1.0 transcriptional regulator PhoU compare
AO353_20795 -0.6 -4.3 deoxyribonuclease compare
AO353_17205 -0.6 -1.4 beta-ketoadipyl CoA thiolase compare
AO353_02320 -0.6 -3.8 allantoinase compare
AO353_14435 -0.6 -2.7 Rieske (2Fe-2S) protein compare
AO353_11310 -0.6 -2.4 aspartyl beta-hydroxylase compare
AO353_00460 -0.6 -1.6 TetR family transcriptional regulator compare
AO353_27535 -0.6 -2.2 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_07445 -0.6 -1.3 pyrroloquinoline quinone biosynthesis protein PqqD compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Fructose in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Fructose across organisms