Experiment set1IT054 for Ralstonia solanacearum IBSBF1503

Compare to:

Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

200 most important genes:

  gene name fitness t score description  
RALBFv3_RS10690 -6.8 -3.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
RALBFv3_RS11420 -6.5 -9.0 FAD-linked oxidase compare
RALBFv3_RS22965 -6.3 -8.6 hypothetical protein compare
RALBFv3_RS13755 -6.1 -4.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
RALBFv3_RS16275 -6.0 -12.8 hypothetical protein compare
RALBFv3_RS14010 -5.9 -3.1 tRNA-Arg compare
RALBFv3_RS04190 -5.9 -8.1 NAD+ synthase compare
RALBFv3_RS09535 -5.9 -9.0 homoserine O-acetyltransferase compare
RALBFv3_RS12700 -5.9 -2.1 lipopolysaccharide heptosyltransferase I compare
RALBFv3_RS16385 -5.5 -7.2 phosphogluconate dehydratase compare
RALBFv3_RS10055 -5.4 -3.1 lauroyl acyltransferase compare
RALBFv3_RS07425 -5.3 -3.6 N-acylglucosamine 2-epimerase compare
RALBFv3_RS13815 -5.2 -3.3 ADP-glyceromanno-heptose 6-epimerase compare
RALBFv3_RS13810 -5.1 -1.8 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
RALBFv3_RS15485 -5.1 -2.1 amino-acid N-acetyltransferase compare
RALBFv3_RS00200 -4.8 -3.3 lysophospholipid transporter LplT compare
RALBFv3_RS00340 -4.7 -1.7 cell division protein FtsZ compare
RALBFv3_RS01455 -4.2 -1.2 phosphoserine phosphatase SerB compare
RALBFv3_RS10560 -4.2 -2.4 thiol:disulfide interchange protein DsbA/DsbL compare
RALBFv3_RS16390 -4.2 -11.6 glucose-6-phosphate dehydrogenase compare
RALBFv3_RS11130 -4.2 -6.3 GTPase compare
RALBFv3_RS22005 -4.1 -0.9 hypothetical protein compare
RALBFv3_RS06940 -4.1 -1.7 shikimate kinase compare
RALBFv3_RS11780 -4.1 -0.8 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase compare
RALBFv3_RS10865 -4.0 -1.4 PTS fructose transporter subunit IIA compare
RALBFv3_RS09615 -4.0 -2.8 DNA-binding response regulator compare
RALBFv3_RS10920 -3.9 -0.8 glycerol-3-phosphate dehydrogenase compare
RALBFv3_RS02465 -3.8 -2.9 glutamate racemase compare
RALBFv3_RS09875 -3.8 -4.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
RALBFv3_RS12930 -3.8 -1.9 peptidoglycan-associated lipoprotein compare
RALBFv3_RS08675 -3.8 -5.8 hypothetical protein compare
RALBFv3_RS00215 -3.8 -1.1 disulfide bond formation protein B compare
RALBFv3_RS13760 -3.7 -6.1 chorismate mutase compare
RALBFv3_RS07730 -3.7 -0.8 general secretion pathway protein GspM compare
RALBFv3_RS11390 -3.7 -2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
RALBFv3_RS03340 -3.6 -1.7 serine/threonine-protein phosphatase compare
RALBFv3_RS01520 -3.3 -1.0 RluA family pseudouridine synthase compare
RALBFv3_RS06135 -3.3 -1.4 RNA pyrophosphohydrolase compare
RALBFv3_RS05680 -3.2 -2.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
RALBFv3_RS06785 -3.2 -3.0 twin-arginine translocase subunit TatC compare
RALBFv3_RS18660 -3.1 -5.5 fructosidase compare
RALBFv3_RS06490 -3.1 -0.6 type 1 glutamine amidotransferase compare
RALBFv3_RS02025 -3.0 -0.9 hypothetical protein compare
RALBFv3_RS19100 -3.0 -4.5 multidrug MFS transporter compare
RALBFv3_RS01320 -2.9 -2.6 peptidylprolyl isomerase compare
RALBFv3_RS23105 -2.8 -0.8 chemotaxis protein CheY compare
RALBFv3_RS06485 -2.8 -1.9 anthranilate synthase component I compare
RALBFv3_RS12145 -2.8 -5.7 lipopolysaccharide heptosyltransferase II compare
RALBFv3_RS06885 -2.8 -5.3 ABC transporter compare
RALBFv3_RS21860 -2.7 -0.6 hypothetical protein compare
RALBFv3_RS12910 -2.6 -2.6 protein TolQ compare
RALBFv3_RS12940 -2.6 -1.6 7-cyano-7-deazaguanine synthase QueC compare
RALBFv3_RS21175 -2.5 -11.7 DUF2875 domain-containing protein compare
RALBFv3_RS19810 -2.5 -1.7 TetR/AcrR family transcriptional regulator compare
RALBFv3_RS13670 -2.5 -11.2 sel1 repeat family protein compare
RALBFv3_RS11145 -2.5 -4.6 RNase adapter RapZ compare
RALBFv3_RS14455 -2.4 -0.7 sugar dehydratase compare
RALBFv3_RS01505 -2.4 -3.7 class I poly(R)-hydroxyalkanoic acid synthase compare
RALBFv3_RS01490 -2.4 -5.6 polyhydroxyalkanoate synthesis repressor PhaR compare
RALBFv3_RS01615 -2.4 -1.3 IclR family transcriptional regulator compare
RALBFv3_RS05580 -2.4 -2.3 pyrroline-5-carboxylate reductase compare
RALBFv3_RS12680 -2.4 -4.0 glycosyltransferase family 2 protein compare
RALBFv3_RS11395 -2.4 -3.4 threonine ammonia-lyase, biosynthetic compare
RALBFv3_RS06015 -2.4 -1.5 carbohydrate kinase family protein compare
RALBFv3_RS12925 -2.4 -4.7 translocation protein TolB compare
RALBFv3_RS15860 -2.3 -1.1 UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase compare
RALBFv3_RS21465 -2.3 -1.0 RNA polymerase sigma factor compare
RALBFv3_RS07050 -2.3 -0.7 divalent-cation tolerance protein CutA compare
RALBFv3_RS05690 -2.2 -0.9 preprotein translocase subunit YajC compare
RALBFv3_RS14400 -2.2 -1.2 septum formation protein Maf compare
RALBFv3_RS04240 -2.2 -1.9 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
RALBFv3_RS06145 -2.2 -3.4 glutamate 5-kinase compare
RALBFv3_RS02460 -2.2 -1.6 fumarate hydratase compare
RALBFv3_RS20655 -2.1 -1.0 1,2-phenylacetyl-CoA epoxidase subunit B compare
RALBFv3_RS15390 -2.1 -1.0 oxidoreductase compare
RALBFv3_RS18435 -2.1 -0.7 UDP-glucose 4-epimerase GalE compare
RALBFv3_RS15870 -2.1 -2.1 pyridoxal phosphate-dependent aminotransferase compare
RALBFv3_RS03555 -2.1 -3.5 nicotinate-nucleotide adenylyltransferase compare
RALBFv3_RS02610 -2.1 -0.8 3-isopropylmalate dehydrogenase compare
RALBFv3_RS04610 -2.1 -2.7 CysB family HTH-type transcriptional regulator compare
RALBFv3_RS03060 -2.1 -2.8 DUF3619 domain-containing protein compare
RALBFv3_RS01300 -2.0 -1.5 glucose-6-phosphate isomerase compare
RALBFv3_RS08425 -2.0 -0.8 tRNA-Ala compare
RALBFv3_RS06880 -2.0 -1.0 hypothetical protein compare
RALBFv3_RS06615 -2.0 -3.8 glucan biosynthesis protein D compare
RALBFv3_RS12670 -2.0 -3.0 glycosyltransferase family 2 protein compare
RALBFv3_RS06620 -2.0 -4.7 glucans biosynthesis glucosyltransferase MdoH compare
RALBFv3_RS01945 -1.9 -1.4 TetR/AcrR family transcriptional regulator compare
RALBFv3_RS10555 -1.9 -0.9 short-chain dehydrogenase compare
RALBFv3_RS17385 -1.9 -0.6 response regulator compare
RALBFv3_RS13775 -1.9 -1.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
RALBFv3_RS24170 -1.9 -0.8 hypothetical protein compare
RALBFv3_RS12475 -1.9 -7.1 MFS transporter compare
RALBFv3_RS12655 -1.9 -2.0 glucose-1-phosphate thymidylyltransferase compare
RALBFv3_RS19140 -1.9 -5.0 acetyltransferase compare
RALBFv3_RS04925 -1.9 -1.7 hypothetical protein compare
RALBFv3_RS06570 -1.8 -1.3 redox-regulated ATPase YchF compare
RALBFv3_RS11645 -1.8 -0.8 D-tyrosyl-tRNA(Tyr) deacylase compare
RALBFv3_RS00165 -1.8 -0.9 haloacid dehalogenase type II compare
RALBFv3_RS06655 -1.8 -2.6 cytochrome o ubiquinol oxidase subunit I compare
RALBFv3_RS06915 -1.8 -6.8 glutamate synthase subunit alpha compare
RALBFv3_RS00635 -1.8 -2.5 ABC-F family ATPase compare
RALBFv3_RS09610 -1.8 -5.2 sensor histidine kinase compare
RALBFv3_RS07580 -1.8 -2.0 hypothetical protein compare
RALBFv3_RS03320 -1.8 -1.4 DNA-directed RNA polymerase subunit omega compare
RALBFv3_RS08345 -1.8 -1.1 hypothetical protein compare
RALBFv3_RS15230 -1.8 -0.7 hypothetical protein compare
RALBFv3_RS02305 -1.8 -3.7 formyltetrahydrofolate deformylase compare
RALBFv3_RS00210 -1.8 -1.0 DNA repair protein RadA compare
RALBFv3_RS19080 -1.8 -0.9 low molecular weight phosphotyrosine protein phosphatase compare
RALBFv3_RS05460 -1.7 -2.9 3-deoxy-7-phosphoheptulonate synthase compare
RALBFv3_RS18795 -1.7 -1.0 BON domain-containing protein compare
RALBFv3_RS12580 -1.7 -1.2 response regulator compare
RALBFv3_RS00770 -1.7 -0.7 muconolactone delta-isomerase compare
RALBFv3_RS16870 -1.7 -1.2 DUF3348 domain-containing protein compare
RALBFv3_RS04530 -1.7 -1.6 LysR family transcriptional regulator compare
RALBFv3_RS02620 -1.7 -1.7 3-isopropylmalate dehydratase large subunit compare
RALBFv3_RS00140 -1.7 -0.7 GALA protein compare
RALBFv3_RS02125 -1.7 -2.0 phosphate regulon transcriptional regulatory protein PhoB compare
RALBFv3_RS18670 -1.7 -2.9 phosphoenolpyruvate--protein phosphotransferase compare
RALBFv3_RS09455 -1.6 -0.9 TetR family transcriptional regulator compare
RALBFv3_RS04200 -1.6 -2.0 hypothetical protein compare
RALBFv3_RS21245 -1.6 -4.0 efflux RND transporter periplasmic adaptor subunit compare
RALBFv3_RS03650 -1.6 -2.8 ATP-dependent helicase compare
RALBFv3_RS24515 -1.6 -1.0 hypothetical protein compare
RALBFv3_RS03065 -1.6 -2.1 DUF3106 domain-containing protein compare
RALBFv3_RS12740 -1.6 -3.2 DUF1439 domain-containing protein compare
RALBFv3_RS14895 -1.6 -0.5 outer membrane protein assembly factor BamC compare
RALBFv3_RS05210 -1.6 -2.0 membrane protein compare
RALBFv3_RS05685 -1.5 -1.1 tRNA guanosine(34) transglycosylase Tgt compare
RALBFv3_RS15310 -1.5 -0.7 FtsH protease activity modulator HflK compare
RALBFv3_RS01645 -1.5 -0.4 phasin; polyhydroxyalkanoate synthesis and granule formation regulator/factor compare
RALBFv3_RS24510 -1.5 -0.6 hypothetical protein compare
RALBFv3_RS13770 -1.5 -4.2 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
RALBFv3_RS19105 -1.5 -5.7 EpsG family protein compare
RALBFv3_RS08620 -1.5 -2.6 hypothetical protein compare
RALBFv3_RS19635 -1.5 -4.0 hypothetical protein compare
RALBFv3_RS06910 -1.5 -1.4 glutamate synthase subunit beta compare
RALBFv3_RS19465 -1.5 -0.6 lactoylglutathione lyase compare
RALBFv3_RS10990 -1.5 -1.0 protoheme IX farnesyltransferase compare
RALBFv3_RS12030 -1.5 -6.2 succinate--CoA ligase subunit alpha compare
RALBFv3_RS15195 -1.5 -1.2 ABC transporter ATP-binding protein compare
RALBFv3_RS06575 -1.4 -0.7 hypothetical protein compare
RALBFv3_RS15170 -1.4 -1.2 recombination protein RecR compare
RALBFv3_RS01410 -1.4 -0.5 hypothetical protein compare
RALBFv3_RS10985 -1.4 -1.4 heme A synthase compare
RALBFv3_RS05035 -1.4 -1.3 hypothetical protein compare
RALBFv3_RS17400 -1.4 -1.9 membrane protein compare
RALBFv3_RS24305 -1.4 -0.9 hypothetical protein compare
RALBFv3_RS02165 -1.4 -0.4 ATP-dependent zinc metalloprotease FtsH compare
RALBFv3_RS11320 -1.4 -3.1 acyl carrier protein compare
RALBFv3_RS19780 -1.4 -1.2 hypothetical protein compare
RALBFv3_RS24685 -1.4 -2.9 hypothetical protein compare
RALBFv3_RS06230 -1.4 -0.6 M23 family peptidase compare
RALBFv3_RS03845 -1.4 -0.6 4-carboxymuconolactone decarboxylase compare
RALBFv3_RS09800 -1.4 -0.7 sensor histidine kinase compare
RALBFv3_RS03560 -1.4 -0.9 ribosome silencing factor compare
RALBFv3_RS06720 -1.4 -2.5 cytochrome c compare
RALBFv3_RS02895 -1.4 -1.4 DUF1178 domain-containing protein compare
RALBFv3_RS09910 -1.4 -2.3 hypothetical protein compare
RALBFv3_RS10805 -1.4 -0.9 O-acetyl-ADP-ribose deacetylase compare
RALBFv3_RS08565 -1.4 -0.6 type II toxin-antitoxin system RelE/ParE family toxin compare
RALBFv3_RS03530 -1.4 -2.2 uracil phosphoribosyltransferase compare
RALBFv3_RS18665 -1.4 -6.1 porin LamB compare
RALBFv3_RS11475 -1.4 -0.7 DUF502 domain-containing protein compare
RALBFv3_RS12575 -1.4 -1.5 response regulator compare
RALBFv3_RS11460 -1.3 -1.3 SAM-dependent methyltransferase compare
RALBFv3_RS12685 -1.3 -4.9 glycosyl transferase compare
RALBFv3_RS16290 -1.3 -1.1 hypothetical protein compare
RALBFv3_RS04960 -1.3 -2.3 hypothetical protein compare
RALBFv3_RS19145 -1.3 -2.7 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
RALBFv3_RS22340 -1.3 -1.4 SAM-dependent methyltransferase compare
RALBFv3_RS03260 -1.3 -3.4 NADP-dependent malic enzyme compare
RALBFv3_RS24755 -1.3 -3.1 hypothetical protein compare
RALBFv3_RS09400 -1.3 -2.5 membrane protein insertion efficiency factor YidD compare
RALBFv3_RS01620 -1.3 -1.5 D-alanyl-D-alanine endopeptidase compare
RALBFv3_RS12725 -1.3 -1.7 protein-L-isoaspartate O-methyltransferase compare
RALBFv3_RS10980 -1.3 -1.0 hypothetical protein compare
RALBFv3_RS17630 -1.3 -2.0 hypothetical protein compare
RALBFv3_RS14740 -1.3 -1.0 single-stranded-DNA-specific exonuclease RecJ compare
RALBFv3_RS08635 -1.3 -3.1 ATP-dependent DNA helicase Rep compare
RALBFv3_RS23585 -1.3 -0.7 hypothetical protein compare
RALBFv3_RS18155 -1.3 -1.4 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
RALBFv3_RS20365 -1.3 -1.2 magnesium and cobalt transport protein CorA compare
RALBFv3_RS01760 -1.3 -1.1 MerR family transcriptional regulator compare
RALBFv3_RS06920 -1.3 -2.3 transposase compare
RALBFv3_RS18305 -1.3 -2.0 ABC transporter ATP-binding protein compare
RALBFv3_RS07655 -1.3 -2.2 NAD(P)H dehydrogenase compare
RALBFv3_RS04455 -1.3 -2.0 cobalamin biosynthesis protein compare
RALBFv3_RS04770 -1.3 -4.0 hybrid sensor histidine kinase/response regulator compare
RALBFv3_RS02150 -1.2 -1.6 phosphate ABC transporter substrate-binding protein PstS compare
RALBFv3_RS11010 -1.2 -1.1 OsmC family peroxiredoxin compare
RALBFv3_RS03110 -1.2 -0.4 DUF924 domain-containing protein compare
RALBFv3_RS15220 -1.2 -1.7 5'/3'-nucleotidase SurE compare
RALBFv3_RS23005 -1.2 -0.7 AAA family ATPase compare
RALBFv3_RS10825 -1.2 -2.0 ATP-dependent protease compare
RALBFv3_RS13945 -1.2 -2.3 peptidase M48 compare
RALBFv3_RS24470 -1.2 -0.6 hypothetical protein compare
RALBFv3_RS07025 -1.2 -3.6 cytochrome c biogenesis protein ResB compare
RALBFv3_RS15335 -1.2 -1.2 phosphoribosyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted in Ralstonia solanacearum IBSBF1503

For in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted across organisms