Experiment set1IT054 for Rahnella sp. WP5

Compare to:

L-Serine nitrogen source; RCH2 media; shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS15880 -4.7 -10.5 nitrogen regulation protein NR(I) compare
EX31_RS02520 -4.7 -5.6 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS02515 -4.7 -5.6 PAS domain-containing protein compare
EX31_RS03835 -4.7 -10.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS02530 -4.6 -6.3 ABC transporter ATP-binding protein compare
EX31_RS12400 -4.6 -8.8 RNA polymerase factor sigma-54 compare
EX31_RS20495 -4.5 -12.1 outer membrane protein assembly factor BamB compare
EX31_RS02690 -4.5 -7.4 pyrroline-5-carboxylate reductase compare
EX31_RS11460 -4.4 -4.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS23415 -4.1 -10.5 citrate synthase compare
EX31_RS03940 -4.1 -13.1 homoserine kinase compare
EX31_RS12825 -4.0 -10.3 ornithine carbamoyltransferase compare
EX31_RS11465 -4.0 -9.6 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS14190 -4.0 -13.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS11470 -3.9 -4.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS03830 -3.9 -21.4 carbamoyl-phosphate synthase large subunit compare
EX31_RS09855 -3.9 -5.9 orotidine-5'-phosphate decarboxylase compare
EX31_RS22245 -3.8 -4.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS23490 -3.8 -3.6 cell envelope integrity protein TolA compare
EX31_RS15020 -3.8 -18.8 ketol-acid reductoisomerase compare
EX31_RS03935 -3.7 -14.9 threonine synthase compare
EX31_RS05785 -3.7 -5.1 superoxide dismutase [Mn] compare
EX31_RS23245 -3.7 -23.2 asparagine synthase B compare
EX31_RS03945 -3.7 -23.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS11735 -3.7 -12.8 homoserine O-succinyltransferase compare
EX31_RS12510 -3.7 -16.5 FAD-dependent oxidoreductase compare
EX31_RS03685 -3.6 -15.8 3-isopropylmalate dehydrogenase compare
EX31_RS18540 -3.6 -4.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS20975 -3.6 -10.2 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS12515 -3.6 -26.1 glutamate synthase large subunit compare
EX31_RS15875 -3.5 -16.3 nitrogen regulation protein NR(II) compare
EX31_RS13275 -3.5 -12.8 diaminopimelate decarboxylase compare
EX31_RS03690 -3.5 -15.5 3-isopropylmalate dehydratase large subunit compare
EX31_RS13445 -3.5 -18.4 argininosuccinate synthase compare
EX31_RS11450 -3.5 -8.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS14180 -3.5 -17.2 argininosuccinate lyase compare
EX31_RS11440 -3.5 -8.6 histidinol dehydrogenase compare
EX31_RS09955 -3.4 -9.7 anthranilate synthase component 1 compare
EX31_RS14200 -3.4 -16.1 phosphoenolpyruvate carboxylase compare
EX31_RS13160 -3.4 -14.1 amino-acid N-acetyltransferase compare
EX31_RS06055 -3.3 -3.9 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS15005 -3.3 -16.0 dihydroxy-acid dehydratase compare
EX31_RS14730 -3.3 -1.6 DUF2756 domain-containing protein compare
EX31_RS08745 -3.3 -3.2 50S ribosomal protein L9 compare
EX31_RS22625 -3.3 -4.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS14340 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS03695 -3.2 -6.2 3-isopropylmalate dehydratase small subunit compare
EX31_RS23440 -3.2 -3.7 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS18095 -3.2 -8.1 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS14215 -3.1 -16.7 cystathionine gamma-synthase compare
EX31_RS09970 -3.1 -10.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS09960 -3.1 -7.6 glutamine amidotransferase compare
EX31_RS09975 -3.0 -10.3 tryptophan synthase subunit beta compare
EX31_RS09980 -2.9 -8.6 tryptophan synthase subunit alpha compare
EX31_RS13045 -2.9 -16.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS20175 -2.9 -10.0 cysteine synthase A compare
EX31_RS14335 -2.8 -2.7 serine O-acetyltransferase compare
EX31_RS16860 -2.8 -19.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS22750 -2.8 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS07590 -2.8 -3.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS20980 -2.7 -8.6 glutamate 5-kinase compare
EX31_RS09965 -2.7 -8.7 anthranilate phosphoribosyltransferase compare
EX31_RS22250 -2.7 -7.3 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS14185 -2.7 -7.7 acetylglutamate kinase compare
EX31_RS11445 -2.7 -10.3 histidinol-phosphate transaminase compare
EX31_RS11455 -2.7 -4.9 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS24385 -2.7 -6.5 dihydroorotase compare
EX31_RS07585 -2.6 -8.9 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS18530 -2.6 -13.8 leucine-responsive transcriptional regulator Lrp compare
EX31_RS22695 -2.6 -9.8 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS16855 -2.6 -13.5 phosphoribosylamine--glycine ligase compare
EX31_RS21895 -2.6 -17.7 phosphoribosylformylglycinamidine synthase compare
EX31_RS07895 -2.6 -9.0 phosphoadenylyl-sulfate reductase compare
EX31_RS14620 -2.5 -3.0 SCP2 domain-containing protein compare
EX31_RS03250 -2.5 -9.8 RNA polymerase-binding protein DksA compare
EX31_RS15870 -2.5 -5.3 glutamate--ammonia ligase compare
EX31_RS14500 -2.5 -8.7 orotate phosphoribosyltransferase compare
EX31_RS09890 -2.4 -13.2 HTH-type transcriptional regulator CysB compare
EX31_RS11675 -2.4 -3.2 Holliday junction branch migration protein RuvA compare
EX31_RS15010 -2.4 -11.6 threonine ammonia-lyase, biosynthetic compare
EX31_RS22620 -2.4 -7.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS19570 -2.4 -14.2 amidophosphoribosyltransferase compare
EX31_RS03680 -2.3 -12.2 2-isopropylmalate synthase compare
EX31_RS25375 -2.3 -3.7 ilv operon leader peptide compare
EX31_RS20735 -2.3 -5.8 exodeoxyribonuclease V subunit beta compare
EX31_RS08150 -2.3 -13.1 inorganic triphosphatase compare
EX31_RS18525 -2.3 -4.9 DNA translocase FtsK compare
EX31_RS07560 -2.3 -16.1 ATP-dependent chaperone ClpB compare
EX31_RS19655 -2.3 -6.7 beta-ketoacyl-ACP synthase I compare
EX31_RS07955 -2.2 -15.3 GTP diphosphokinase compare
EX31_RS12785 -2.2 -11.4 aspartate carbamoyltransferase compare
EX31_RS07870 -2.2 -7.3 adenylyl-sulfate kinase compare
EX31_RS14205 -2.2 -10.8 methylenetetrahydrofolate reductase compare
EX31_RS03480 -2.2 -4.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS08535 -2.1 -3.4 30S ribosome-binding factor RbfA compare
EX31_RS24220 -2.1 -2.1 hypothetical protein compare
EX31_RS14310 -2.1 -5.4 6-phosphofructokinase compare
EX31_RS01990 -2.0 -2.6 type VI secretion system baseplate subunit TssE compare
EX31_RS07905 -1.9 -12.9 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS07900 -1.9 -11.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS20450 -1.8 -6.1 IMP dehydrogenase compare
EX31_RS25370 -1.7 -9.5 HTH-type transcriptional regulator MetR compare
EX31_RS23495 -1.7 -6.7 Tol-Pal system protein TolB compare
EX31_RS14990 -1.7 -9.4 acetolactate synthase 2 catalytic subunit compare
EX31_RS21850 -1.7 -2.0 pyridoxine 5'-phosphate synthase compare
EX31_RS23500 -1.7 -5.0 peptidoglycan-associated lipoprotein Pal compare
EX31_RS18255 -1.7 -3.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS07880 -1.7 -11.3 sulfate adenylyltransferase subunit CysD compare
EX31_RS11500 -1.6 -2.2 glycosyltransferase family 2 protein compare
EX31_RS08720 -1.6 -10.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS04105 -1.6 -2.7 helix-turn-helix domain-containing protein compare
EX31_RS07875 -1.6 -12.7 sulfate adenylyltransferase subunit CysN compare
EX31_RS06060 -1.6 -4.4 phosphate ABC transporter permease PstA compare
EX31_RS03890 -1.6 -4.3 Na+/H+ antiporter NhaA compare
EX31_RS09895 -1.5 -3.4 type I DNA topoisomerase compare
EX31_RS22740 -1.5 -8.5 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS03310 -1.5 -3.4 hypothetical protein compare
EX31_RS20140 -1.5 -2.5 hypothetical protein compare
EX31_RS02465 -1.5 -2.6 hypothetical protein compare
EX31_RS19600 -1.4 -6.4 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS06620 -1.4 -2.7 electron transport complex subunit RsxA compare
EX31_RS20090 -1.4 -2.4 tRNA-Ala compare
EX31_RS22430 -1.4 -2.2 hemolysin expression modulator Hha compare
EX31_RS04325 -1.4 -1.1 hypothetical protein compare
EX31_RS19420 -1.4 -3.1 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS06000 -1.4 -4.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS03775 -1.4 -2.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS21280 -1.4 -1.7 hydroxymyristoyl-ACP dehydratase compare
EX31_RS15000 -1.4 -8.9 branched-chain amino acid transaminase compare
EX31_RS18570 -1.3 -1.4 cold shock-like protein CspD compare
EX31_RS13815 -1.3 -1.3 ribonuclease T compare
EX31_RS02385 -1.3 -1.3 hypothetical protein compare
EX31_RS08545 -1.3 -4.2 transcription termination/antitermination protein NusA compare
EX31_RS23485 -1.3 -2.5 colicin uptake protein TolR compare
EX31_RS06070 -1.3 -5.5 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS06065 -1.3 -5.0 phosphate ABC transporter permease PstC compare
EX31_RS23125 -1.3 -2.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS06595 -1.3 -1.5 electron transport complex subunit E compare
EX31_RS19610 -1.3 -5.8 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS24260 -1.3 -2.3 YceK/YidQ family lipoprotein compare
EX31_RS15155 -1.3 -2.4 diaminopimelate epimerase compare
EX31_RS24480 -1.3 -2.5 purine nucleoside phosphoramidase compare
EX31_RS06670 -1.2 -2.6 FadR family transcriptional regulator compare
EX31_RS26025 -1.2 -1.9 conjugal transfer protein TraK compare
EX31_RS03900 -1.2 -4.1 molecular chaperone DnaK compare
EX31_RS11010 -1.2 -1.5 DgsA anti-repressor MtfA compare
EX31_RS07380 -1.2 -1.5 redox-regulated ATPase YchF compare
EX31_RS20530 -1.1 -4.8 nucleoside-diphosphate kinase compare
EX31_RS00700 -1.1 -1.6 ABC transporter permease compare
EX31_RS12175 -1.1 -2.9 DNA-binding transcriptional regulator Fis compare
EX31_RS24715 -1.1 -6.2 L-serine ammonia-lyase compare
EX31_RS16655 -1.1 -1.1 hypothetical protein compare
EX31_RS01960 -1.1 -2.5 DUF2931 family protein compare
EX31_RS25690 -1.1 -1.9 tyrosine-type recombinase/integrase compare
EX31_RS03400 -1.1 -3.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS25340 -1.1 -3.4 hypothetical protein compare
EX31_RS16845 -1.0 -2.8 DNA-binding protein HU-alpha compare
EX31_RS23480 -1.0 -2.6 Tol-Pal system protein TolQ compare
EX31_RS25110 -1.0 -2.0 DUF2474 domain-containing protein compare
EX31_RS25125 -1.0 -2.5 thr operon leader peptide compare
EX31_RS01610 -1.0 -2.1 phage tail protein compare
EX31_RS02525 -1.0 -4.4 ABC transporter permease compare
EX31_RS24395 -1.0 -3.4 ribonuclease E compare
EX31_RS10145 -1.0 -2.5 ABC transporter permease compare
EX31_RS25365 -1.0 -0.9 50S ribosomal protein L31 compare
EX31_RS17285 -1.0 -3.2 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS03035 -1.0 -5.5 LysE family transporter compare
EX31_RS06150 -1.0 -7.3 transcriptional regulator AsnC compare
EX31_RS06600 -1.0 -3.1 electron transport complex subunit RsxG compare
EX31_RS03315 -0.9 -2.3 type VI secretion system tube protein Hcp compare
EX31_RS10580 -0.9 -3.5 septum site-determining protein MinC compare
EX31_RS20220 -0.9 -3.2 sulfate/thiosulfate ABC transporter permease CysT compare
EX31_RS03085 -0.9 -5.3 hypothetical protein compare
EX31_RS01620 -0.9 -1.8 DUF2190 family protein compare
EX31_RS15540 -0.9 -1.4 SDR family oxidoreductase compare
EX31_RS18040 -0.9 -6.4 porin OmpA compare
EX31_RS03710 -0.9 -1.3 glucose uptake inhibitor SgrT compare
EX31_RS20890 -0.9 -1.2 hypothetical protein compare
EX31_RS19425 -0.9 -3.7 NADH-quinone oxidoreductase subunit C/D compare
EX31_RS24375 -0.9 -2.3 biofilm formation regulator BssS compare
EX31_RS06985 -0.9 -1.9 iron export ABC transporter permease subunit FetB compare
EX31_RS21805 -0.9 -1.3 anti-sigma-E factor RseA compare
EX31_RS09210 -0.9 -2.8 hypothetical protein compare
EX31_RS06605 -0.9 -3.9 electron transport complex subunit RsxD compare
EX31_RS21750 -0.9 -3.9 RnfH family protein compare
EX31_RS06610 -0.8 -4.2 electron transport complex subunit RsxC compare
EX31_RS02015 -0.8 -4.9 TetR family transcriptional regulator compare
EX31_RS22800 -0.8 -1.7 ArsC family reductase compare
EX31_RS02125 -0.8 -2.4 helix-turn-helix transcriptional regulator compare
EX31_RS14995 -0.8 -5.0 acetolactate synthase 2 small subunit compare
EX31_RS19385 -0.8 -2.7 NADH-quinone oxidoreductase subunit L compare
EX31_RS03220 -0.8 -1.1 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS10515 -0.8 -2.6 disulfide bond formation protein DsbB compare
EX31_RS11435 -0.8 -2.7 ATP phosphoribosyltransferase compare
EX31_RS08695 -0.8 -6.0 outer membrane protein assembly factor compare
EX31_RS04925 -0.8 -1.4 Fe-S biogenesis protein NfuA compare
EX31_RS25665 -0.8 -1.4 DUF2502 domain-containing protein compare
EX31_RS06615 -0.8 -3.2 electron transport complex subunit RsxB compare
EX31_RS06485 -0.8 -1.3 YdbL family protein compare
EX31_RS13875 -0.8 -3.9 major outer membrane lipoprotein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source L-Serine across organisms