Experiment set1IT054 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 5 generations

200 most important genes:

  gene name fitness t score description  
MMP_RS06700 -4.1 -19.5 hypothetical protein compare
MMP_RS01175 -3.3 -12.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05920 -2.9 -1.6 50S ribosomal protein L37e compare
MMP_RS02280 -2.9 -2.4 DUF211 domain-containing protein compare
MMP_RS02135 -2.7 -10.3 DUF5612 domain-containing protein compare
MMP_RS07845 -2.6 -5.6 LL-diaminopimelate aminotransferase compare
MMP_RS01385 -2.6 -1.6 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS01985 -2.5 -8.9 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS06295 -2.5 -11.6 methanogenesis marker 14 protein compare
MMP_RS03315 -2.3 -3.3 ferrous iron transport protein A compare
MMP_RS00300 -2.3 -1.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01225 -2.3 -6.3 DUF5379 domain-containing protein compare
MMP_RS01265 -2.3 -7.2 hypothetical protein compare
MMP_RS06315 -2.2 -2.6 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00305 -2.2 -4.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS08300 -2.2 -2.9 metal-sulfur cluster assembly factor compare
MMP_RS07390 -2.1 -6.2 cell division protein FtsZ compare
MMP_RS06625 -2.1 -4.0 DNA primase compare
MMP_RS07635 -2.1 -10.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06355 -2.0 -5.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01220 -2.0 -11.5 hypothetical protein compare
MMP_RS06120 -2.0 -4.4 UPF0147 family protein compare
MMP_RS04585 -2.0 -11.0 AIR synthase related protein compare
MMP_RS07525 -2.0 -9.5 4Fe-4S binding protein compare
MMP_RS01755 -1.9 -3.2 DUF2097 domain-containing protein compare
MMP_RS05345 -1.9 -6.8 hypothetical protein compare
MMP_RS05430 -1.9 -4.7 TIGR00288 family NYN domain-containing protein compare
MMP_RS01610 -1.9 -8.4 hypothetical protein compare
MMP_RS08210 -1.9 -4.0 phosphatidylglycerophosphatase A compare
MMP_RS03025 -1.8 -6.6 molybdenum cofactor guanylyltransferase compare
MMP_RS03475 -1.8 -1.6 hypothetical protein compare
MMP_RS08790 -1.8 -3.1 translation initiation factor IF-2 subunit alpha compare
MMP_RS01380 -1.8 -6.9 PHP domain-containing protein compare
MMP_RS06630 -1.8 -2.5 UPF0058 family protein compare
MMP_RS06350 -1.8 -7.1 HesA/MoeB/ThiF family protein compare
MMP_RS03205 -1.7 -3.1 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS03600 -1.7 -2.8 triose-phosphate isomerase compare
MMP_RS03015 -1.7 -10.0 GTP 3' 8-cyclase MoaA compare
MMP_RS08745 -1.7 -9.3 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06400 -1.7 -2.7 4Fe-4S binding protein compare
MMP_RS05515 -1.6 -8.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS00685 -1.6 -5.6 2-phospho-L-lactate guanylyltransferase compare
MMP_RS04775 -1.6 -5.3 adenosylhomocysteinase compare
MMP_RS07445 -1.6 -6.7 helix-turn-helix domain-containing protein compare
MMP_RS02240 -1.6 -4.7 methanogenesis marker 7 protein compare
MMP_RS06130 -1.6 -5.4 peptidylprolyl isomerase compare
MMP_RS08460 -1.6 -2.8 proteasome-activating nucleotidase compare
MMP_RS06680 -1.6 -12.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS08715 -1.6 -1.8 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03640 -1.5 -4.8 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06270 -1.5 -6.8 TIGR00300 family protein compare
MMP_RS01325 -1.5 -3.6 dihydroneopterin aldolase family protein compare
MMP_RS02145 -1.5 -7.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS05540 -1.5 -4.9 hypothetical protein compare
MMP_RS01500 -1.4 -2.4 CBS domain-containing protein compare
MMP_RS03435 -1.4 -2.4 ketol-acid reductoisomerase compare
MMP_RS07380 -1.4 -4.2 transcription elongation factor Spt5 compare
MMP_RS00335 -1.4 -9.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS05815 -1.4 -2.2 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS04890 -1.4 -1.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02195 -1.4 -4.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08650 -1.4 -4.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06475 -1.4 -5.7 FAD-dependent oxidoreductase compare
MMP_RS00985 -1.4 -7.0 CDC48 family AAA ATPase compare
MMP_RS04685 -1.4 -3.7 DUF126 domain-containing protein compare
MMP_RS08165 -1.3 -2.5 phosphoglycerate dehydrogenase compare
MMP_RS06940 -1.3 -4.6 polyprenyl diphosphate synthase compare
MMP_RS06885 -1.3 -4.3 50S ribosome-binding GTPase compare
MMP_RS06285 -1.3 -3.0 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07600 -1.3 -4.3 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07630 -1.3 -2.0 ATP-binding cassette domain-containing protein compare
MMP_RS08440 -1.3 -4.7 cell division protein SepF compare
MMP_RS07005 -1.3 -1.2 4Fe-4S binding protein compare
MMP_RS06685 -1.3 -9.0 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS03155 -1.3 -7.9 precorrin-6A reductase compare
MMP_RS08720 -1.3 -2.1 4Fe-4S binding protein compare
MMP_RS05250 -1.2 -1.9 NFYB/HAP3 family transcription factor subunit compare
MMP_RS00110 -1.2 -4.2 hypothetical protein compare
MMP_RS03250 -1.2 -2.9 MJ1244 family protein compare
MMP_RS08435 -1.2 -4.5 Era-like GTP-binding protein compare
MMP_RS06020 -1.2 -4.3 archaeoflavoprotein AfpA compare
MMP_RS02010 -1.2 -8.5 PHP domain-containing protein compare
MMP_RS02130 -1.2 -3.5 zinc metalloprotease HtpX compare
MMP_RS03035 -1.2 -4.8 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07385 -1.2 -2.8 protein translocase SEC61 complex subunit gamma compare
MMP_RS07755 -1.2 -2.5 DUF555 domain-containing protein compare
MMP_RS00695 -1.2 -1.9 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01905 -1.2 -9.6 glycosyltransferase compare
MMP_RS01545 -1.2 -1.9 CBS domain-containing protein compare
MMP_RS00810 -1.2 -6.9 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS02800 -1.2 -6.7 nucleotidyltransferase domain-containing protein compare
MMP_RS01600 -1.2 -1.9 50S ribosomal protein L15e compare
MMP_RS06925 -1.2 -2.2 ribonuclease VapC4 compare
MMP_RS01800 -1.2 -4.4 TIGR00303 family protein compare
MMP_RS07435 -1.2 -2.3 GMP synthase subunit A compare
MMP_RS07685 -1.1 -7.7 TIGR01212 family radical SAM protein compare
MMP_RS04780 -1.1 -4.1 ribonuclease P compare
MMP_RS03445 -1.1 -1.9 methanogenesis marker 17 protein compare
MMP_RS07625 -1.1 -3.1 cobalt ECF transporter T component CbiQ compare
MMP_RS02355 -1.1 -4.8 30S ribosomal protein S27ae compare
MMP_RS08635 -1.1 -2.5 UbiA family prenyltransferase compare
MMP_RS03580 -1.1 -3.7 signal recognition particle-docking protein FtsY compare
MMP_RS07200 -1.1 -6.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01900 -1.1 -9.2 hypothetical protein compare
MMP_RS03400 -1.1 -3.0 archease compare
MMP_RS07750 -1.1 -5.1 DUF357 domain-containing protein compare
MMP_RS04870 -1.1 -4.3 TIGR02253 family HAD-type hydrolase compare
MMP_RS06105 -1.1 -6.9 hydrogenase maturation peptidase HycI compare
MMP_RS08595 -1.1 -1.1 flagellar protein C compare
MMP_RS08320 -1.1 -6.9 molybdopterin molybdotransferase MoeA compare
MMP_RS06720 -1.1 -7.3 response regulator transcription factor compare
MMP_RS05925 -1.1 -3.4 small nuclear ribonucleoprotein compare
MMP_RS02165 -1.1 -6.1 tRNA-dihydrouridine synthase compare
MMP_RS00750 -1.1 -3.1 fumarate hydratase compare
MMP_RS04605 -1.1 -3.4 cobalt ECF transporter T component CbiQ compare
MMP_RS07730 -1.1 -3.3 pyruvate synthase subunit beta compare
MMP_RS01925 -1.1 -7.7 DUF1616 domain-containing protein compare
MMP_RS08785 -1.1 -1.9 RNA-protein complex protein Nop10 compare
MMP_RS04090 -1.0 -3.8 hypothetical protein compare
MMP_RS06340 -1.0 -6.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS02885 -1.0 -8.9 molybdopterin biosynthesis protein compare
MMP_RS01445 -1.0 -5.6 hypothetical protein compare
MMP_RS01795 -1.0 -3.2 methanogenesis marker 6 protein compare
MMP_RS06980 -1.0 -6.5 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS06730 -1.0 -3.3 phosphopantothenate/pantothenate synthetase compare
MMP_RS06670 -1.0 -4.5 glucose-6-phosphate isomerase compare
MMP_RS00515 -1.0 -1.9 DUF655 domain-containing protein compare
MMP_RS03110 -1.0 -3.9 glycosyltransferase family 2 protein compare
MMP_RS03145 -1.0 -5.5 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS07075 -1.0 -5.0 phosphomannomutase/phosphoglucomutase compare
MMP_RS03305 -1.0 -6.0 winged helix-turn-helix domain-containing protein compare
MMP_RS07860 -1.0 -1.4 hypothetical protein compare
MMP_RS02345 -1.0 -2.2 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS05545 -1.0 -5.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01020 -1.0 -1.8 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS07580 -1.0 -2.4 DUF356 domain-containing protein compare
MMP_RS01960 -1.0 -0.9 hypothetical protein compare
MMP_RS02900 -0.9 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06215 -0.9 -3.6 30S ribosomal protein S6e compare
MMP_RS07605 -0.9 -4.6 diadenylate cyclase compare
MMP_RS07425 -0.9 -4.0 GTP-binding protein compare
MMP_RS01890 -0.9 -3.8 nucleotide sugar dehydrogenase compare
MMP_RS06345 -0.9 -6.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS01955 -0.9 -4.5 hypothetical protein compare
MMP_RS06715 -0.9 -7.3 cache domain-containing protein compare
MMP_RS03960 -0.9 -1.3 hypothetical protein compare
MMP_RS00520 -0.9 -2.0 RNA polymerase Rpb4 family protein compare
MMP_RS01910 -0.9 -6.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS06865 -0.9 -1.5 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06895 -0.9 -2.2 selenocysteine-specific translation elongation factor compare
MMP_RS06600 -0.9 -1.2 class III signal peptide-containing protein compare
MMP_RS07710 -0.9 -5.0 cell division protein FtsZ compare
MMP_RS01915 -0.8 -7.2 DUF354 domain-containing protein compare
MMP_RS07545 -0.8 -1.5 HTH domain-containing protein compare
MMP_RS01880 -0.8 -5.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08915 -0.8 -2.6 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS01005 -0.8 -2.0 riboflavin synthase compare
MMP_RS00310 -0.8 -6.6 CBS domain-containing protein compare
MMP_RS03140 -0.8 -5.8 hypothetical protein compare
MMP_RS05265 -0.8 -2.4 2-isopropylmalate synthase compare
MMP_RS03095 -0.8 -5.1 diphthine synthase compare
MMP_RS03385 -0.8 -1.5 cation diffusion facilitator family transporter compare
MMP_RS00320 -0.8 -2.4 class I SAM-dependent methyltransferase compare
MMP_RS00915 -0.8 -4.6 DUF116 domain-containing protein compare
MMP_RS02340 -0.8 -1.8 DNA-directed RNA polymerase subunit E'' compare
MMP_RS03700 -0.8 -5.7 sodium:proton antiporter compare
MMP_RS06310 -0.8 -2.5 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS08840 -0.8 -5.3 class I SAM-dependent methyltransferase compare
MMP_RS01700 -0.8 -1.2 dihydroxy-acid dehydratase compare
MMP_RS02190 -0.8 -1.3 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS08605 -0.8 -3.6 flagellar protein E compare
MMP_RS01885 -0.8 -4.8 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS01840 -0.7 -4.9 TIGR00289 family protein compare
MMP_RS08645 -0.7 -5.4 UPF0179 family protein compare
MMP_RS05765 -0.7 -4.3 M42 family metallopeptidase compare
MMP_RS01180 -0.7 -1.3 XTP/dITP diphosphatase compare
MMP_RS01875 -0.7 -5.7 N-acetyltransferase compare
MMP_RS07955 -0.7 -3.1 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS05245 -0.7 -5.1 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS07090 -0.7 -5.1 tRNA (adenine-N1)-methyltransferase compare
MMP_RS06200 -0.7 -5.8 M24 family metallopeptidase compare
MMP_RS06855 -0.7 -5.6 hypothetical protein compare
MMP_RS05525 -0.7 -3.5 calcium/sodium antiporter compare
MMP_RS02875 -0.7 -5.0 chorismate pyruvate-lyase family protein compare
MMP_RS01365 -0.7 -2.0 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS03390 -0.7 -3.5 malate dehydrogenase compare
MMP_RS01895 -0.7 -5.3 flippase compare
MMP_RS07350 -0.7 -1.2 preprotein translocase subunit Sec61beta compare
MMP_RS08590 -0.7 -4.0 flagellin compare
MMP_RS04620 -0.7 -4.7 cobalt transporter CbiM compare
MMP_RS00620 -0.7 -4.6 4Fe-4S binding protein compare
MMP_RS08860 -0.6 -2.7 MinD/ParA family protein compare
MMP_RS05640 -0.6 -4.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS07885 -0.6 -1.2 tripartite tricarboxylate transporter permease compare
MMP_RS01920 -0.6 -5.4 glycosyltransferase family 2 protein compare
MMP_RS00895 -0.6 -2.8 hypothetical protein compare
MMP_RS08660 -0.6 -4.1 DHH family phosphoesterase compare
MMP_RS04720 -0.6 -2.5 DedA family protein compare
MMP_RS07960 -0.6 -4.8 sugar phosphate isomerase/epimerase compare
MMP_RS00475 -0.6 -4.7 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community Ethanol across organisms