Experiment set1IT054 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 5 generations

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS06725 +0.9 6.5 hypothetical protein compare
MMP_RS09025 +0.8 2.2 hypothetical protein compare
MMP_RS06325 +0.7 4.4 hypothetical protein compare
MMP_RS02175 +0.7 1.4 DUF1611 domain-containing protein compare
MMP_RS01650 +0.7 1.5 sulfurtransferase TusA family protein compare
MMP_RS08275 +0.6 5.2 hypothetical protein compare
MMP_RS00655 +0.6 3.0 hypothetical protein compare
MMP_RS08930 +0.6 2.1 hypothetical protein compare
MMP_RS01775 +0.5 1.8 TIGR00297 family protein compare
MMP_RS08310 +0.5 2.2 TMEM165/GDT1 family protein compare
MMP_RS06015 +0.5 3.5 flavodoxin family protein compare
MMP_RS07645 +0.5 2.1 aldehyde dehydrogenase family protein compare
MMP_RS00395 +0.5 1.6 MGMT family protein compare
MMP_RS07345 +0.4 2.5 glycine synthesis protein GlyXL (from data) compare
MMP_RS06930 +0.4 3.2 MBL fold metallo-hydrolase compare
MMP_RS00290 +0.4 3.4 hypothetical protein compare
MMP_RS08580 +0.4 2.1 flagellin compare
MMP_RS06840 +0.4 0.7 DNA-directed RNA polymerase subunit N compare
MMP_RS03420 +0.4 1.8 acetolactate synthase small subunit compare
MMP_RS08105 +0.4 2.7 6-carboxyhexanoate--CoA ligase compare
MMP_RS04055 +0.4 1.3 hypothetical protein compare
MMP_RS01865 +0.4 1.3 GPR1/FUN34/YaaH family transporter compare
MMP_RS08850 +0.4 3.6 hypothetical protein compare
MMP_RS01570 +0.4 1.4 hypothetical protein compare
MMP_RS08640 +0.4 3.3 TIM barrel protein compare
MMP_RS06530 +0.4 2.2 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS09050 +0.4 2.4 CAP domain-containing protein compare
MMP_RS08500 +0.3 2.0 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS02470 +0.3 1.0 helix-turn-helix transcriptional regulator compare
MMP_RS02475 +0.3 1.3 hypothetical protein compare
MMP_RS00825 +0.3 1.5 fumarylacetoacetate hydrolase family protein compare
MMP_RS08760 +0.3 1.9 hypothetical protein compare
MMP_RS02550 +0.3 1.8 helix-turn-helix transcriptional regulator compare
MMP_RS02790 +0.3 0.9 class III signal peptide-containing protein compare
MMP_RS02595 +0.3 0.9 putative zinc-binding protein compare
MMP_RS07125 +0.3 1.4 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS06435 +0.3 2.1 CBS domain-containing protein compare
MMP_RS06910 +0.3 2.3 RlmF-related methyltransferase compare
MMP_RS08845 +0.3 2.7 archaellum operon transcriptional activator EarA family protein compare
MMP_RS01675 +0.3 1.1 hypothetical protein compare
MMP_RS01165 +0.3 1.9 DUF434 domain-containing protein compare
MMP_RS00735 +0.3 1.1 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS07650 +0.3 2.5 TldD/PmbA family protein compare
MMP_RS00285 +0.3 2.1 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS00990 +0.3 1.2 hypothetical protein compare
MMP_RS01785 +0.3 2.0 hypothetical protein compare
MMP_RS08940 +0.3 0.8 MetS family NSS transporter small subunit compare
MMP_RS08175 +0.3 2.3 7-cyano-7-deazaguanine synthase compare
MMP_RS06335 +0.3 2.2 HAD family hydrolase compare
MMP_RS02675 +0.3 1.0 hypothetical protein compare
MMP_RS00185 +0.3 2.4 potassium channel protein compare
MMP_RS08160 +0.3 1.5 EamA family transporter compare
MMP_RS08470 +0.3 2.0 ATP-binding cassette domain-containing protein compare
MMP_RS02490 +0.3 1.4 hypothetical protein compare
MMP_RS07680 +0.3 1.8 DUF366 family protein compare
MMP_RS08480 +0.3 1.9 molybdate ABC transporter substrate-binding protein compare
MMP_RS07925 +0.3 1.8 haloacid dehalogenase compare
MMP_RS03450 +0.3 1.2 glycine synthesis protein GlyXS (from data) compare
MMP_RS00100 +0.3 2.2 tRNA pseudouridine(13) synthase TruD compare
MMP_RS00085 +0.3 1.8 DNA cytosine methyltransferase compare
MMP_RS02905 +0.3 1.6 2-thiouracil desulfurase family protein compare
MMP_RS07115 +0.3 2.1 MBL fold metallo-hydrolase compare
MMP_RS06300 +0.2 1.5 ABC transporter substrate-binding protein compare
MMP_RS07120 +0.2 1.9 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS07550 +0.2 2.1 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS00380 +0.2 1.4 P-II family nitrogen regulator compare
MMP_RS00105 +0.2 1.7 hypothetical protein compare
MMP_RS07970 +0.2 1.3 hypothetical protein compare
MMP_RS08265 +0.2 1.5 rubrerythrin compare
MMP_RS07835 +0.2 1.3 TldD/PmbA family protein compare
MMP_RS04265 +0.2 1.2 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS02680 +0.2 2.0 ABC transporter permease compare
MMP_RS08325 +0.2 1.9 hypothetical protein compare
MMP_RS07765 +0.2 1.7 sodium:alanine symporter family protein compare
MMP_RS07890 +0.2 0.8 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS00770 +0.2 1.1 hypothetical protein compare
MMP_RS03670 +0.2 0.8 DUF1890 domain-containing protein compare
MMP_RS08390 +0.2 1.3 DUF5400 domain-containing protein compare
MMP_RS03675 +0.2 2.0 RimK family alpha-L-glutamate ligase compare
MMP_RS06110 +0.2 1.1 ATP-dependent protease LonB compare
MMP_RS05980 +0.2 1.8 ferritin compare
MMP_RS02895 +0.2 1.6 DHH family phosphoesterase compare
MMP_RS05715 +0.2 1.4 hypothetical protein compare
MMP_RS08100 +0.2 1.2 8-amino-7-oxononanoate synthase compare
MMP_RS05355 +0.2 0.4 hypothetical protein compare
MMP_RS01185 +0.2 1.7 hypothetical protein compare
MMP_RS01630 +0.2 1.6 N-glycosylase/DNA lyase compare
MMP_RS02045 +0.2 0.7 tRNA-Met compare
MMP_RS06520 +0.2 0.9 DUF1786 domain-containing protein compare
MMP_RS08770 +0.2 1.7 hypothetical protein compare
MMP_RS02360 +0.2 1.5 hypothetical protein compare
MMP_RS08385 +0.2 1.4 ABC transporter substrate-binding protein compare
MMP_RS01980 +0.2 1.7 trimeric intracellular cation channel family protein compare
MMP_RS08750 +0.2 1.2 hypothetical protein compare
MMP_RS08775 +0.2 1.2 methanogenesis marker 9 domain-containing protein compare
MMP_RS02110 +0.2 0.7 hypothetical protein compare
MMP_RS00155 +0.2 1.4 heavy metal-binding domain-containing protein compare
MMP_RS08700 +0.2 1.4 hypothetical protein compare
MMP_RS08080 +0.2 1.5 YchF/TatD family DNA exonuclease compare
MMP_RS00035 +0.2 1.7 DUF2098 family protein compare
MMP_RS01855 +0.2 1.5 2-hydroxyacyl-CoA dehydratase family protein compare
MMP_RS00480 +0.2 1.3 hypothetical protein compare
MMP_RS02725 +0.2 1.5 molybdate ABC transporter permease subunit compare
MMP_RS07715 +0.2 1.6 YfcE family phosphodiesterase compare
MMP_RS07130 +0.2 1.3 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS08360 +0.2 0.8 hypothetical protein compare
MMP_RS03965 +0.2 0.8 hypothetical protein compare
MMP_RS06545 +0.2 1.1 ferredoxin family protein compare
MMP_RS00435 +0.2 1.6 CPBP family intramembrane metalloprotease compare
MMP_RS08615 +0.2 0.7 flagellar protein G compare
MMP_RS09060 +0.2 1.5 hypothetical protein compare
MMP_RS07590 +0.2 1.4 hypothetical protein compare
MMP_RS07840 +0.2 0.6 ribonuclease III compare
MMP_RS00670 +0.2 1.0 TIM barrel protein compare
MMP_RS06875 +0.2 1.3 FAD-dependent oxidoreductase compare
MMP_RS01460 +0.2 0.7 hypothetical protein compare
MMP_RS00280 +0.2 1.4 DUF2118 domain-containing protein compare
MMP_RS04015 +0.2 0.7 hypothetical protein compare
MMP_RS02290 +0.2 1.2 MBL fold metallo-hydrolase compare
MMP_RS02020 +0.2 1.2 gamma-glutamylcyclotransferase compare
MMP_RS06555 +0.2 1.0 cupin domain-containing protein compare
MMP_RS00540 +0.2 1.2 PLP-dependent aminotransferase family protein compare
MMP_RS07595 +0.2 1.4 hypothetical protein compare
MMP_RS08670 +0.2 1.2 metallophosphoesterase compare
MMP_RS08380 +0.2 1.3 phosphatase PAP2 family protein compare
MMP_RS03535 +0.2 0.9 helix-turn-helix transcriptional regulator compare
MMP_RS08830 +0.2 1.0 GTP-binding protein compare
MMP_RS06760 +0.2 1.1 hypothetical protein compare
MMP_RS06480 +0.2 1.1 ABC transporter substrate-binding protein compare
MMP_RS00630 +0.2 1.0 ECF transporter S component compare
MMP_RS01150 +0.2 0.9 aldo/keto reductase compare
MMP_RS03790 +0.2 1.3 hypothetical protein compare
MMP_RS00530 +0.2 1.2 tRNA pseudouridine(54/55) synthase Pus10 compare
MMP_RS08980 +0.2 1.1 hypothetical protein compare
MMP_RS05695 +0.2 1.2 phospholipase D-like domain-containing protein compare
MMP_RS05275 +0.2 1.3 AI-2E family transporter compare
MMP_RS02580 +0.2 1.2 cupin domain-containing protein compare
MMP_RS07775 +0.2 1.1 alanine dehydrogenase compare
MMP_RS02450 +0.2 0.8 hypothetical protein compare
MMP_RS00900 +0.2 0.6 50S ribosomal protein L39e compare
MMP_RS03895 +0.2 0.8 hypothetical protein compare
MMP_RS00545 +0.2 0.8 XRE family transcriptional regulator compare
MMP_RS07135 +0.2 1.1 coenzyme F420 hydrogenase subunit beta compare
MMP_RS00660 +0.2 1.4 alkaline phosphatase family protein compare
MMP_RS06975 +0.2 0.7 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS04745 +0.1 1.3 proteasome assembly chaperone family protein compare
MMP_RS08490 +0.1 1.4 hypothetical protein compare
MMP_RS05990 +0.1 1.0 DsrE family protein compare
MMP_RS01145 +0.1 1.1 ABC transporter ATP-binding protein compare
MMP_RS02500 +0.1 1.1 minichromosome maintenance protein MCM compare
MMP_RS04440 +0.1 1.1 nitrogenase iron protein compare
MMP_RS03440 +0.1 0.4 MoaD/ThiS family protein compare
MMP_RS08205 +0.1 1.1 stage II sporulation protein M compare
MMP_RS00040 +0.1 1.0 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS06440 +0.1 1.1 CBS domain-containing protein compare
MMP_RS07195 +0.1 1.0 M20 family metallo-hydrolase compare
MMP_RS05360 +0.1 0.9 hypothetical protein compare
MMP_RS05995 +0.1 1.2 FprA family A-type flavoprotein compare
MMP_RS03680 +0.1 1.0 hypothetical protein compare
MMP_RS03740 +0.1 0.8 indolepyruvate oxidoreductase subunit beta compare
MMP_RS08620 +0.1 0.9 flagellar accessory protein FlaH compare
MMP_RS06010 +0.1 1.2 heavy metal translocating P-type ATPase compare
MMP_RS02320 +0.1 1.2 glutamate-cysteine ligase family protein compare
MMP_RS06445 +0.1 1.0 DUF89 domain-containing protein compare
MMP_RS01055 +0.1 0.7 hypothetical protein compare
MMP_RS01430 +0.1 1.0 mechanosensitive ion channel family protein compare
MMP_RS08410 +0.1 1.1 DUF169 domain-containing protein compare
MMP_RS00955 +0.1 1.2 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS00295 +0.1 0.7 gamma carbonic anhydrase family protein compare
MMP_RS03395 +0.1 0.8 hypothetical protein compare
MMP_RS08855 +0.1 1.1 hypothetical protein compare
MMP_RS07150 +0.1 0.9 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS05085 +0.1 1.0 AAA family ATPase compare
MMP_RS00625 +0.1 1.1 hypothetical protein compare
MMP_RS02690 +0.1 1.1 FmdE family protein compare
MMP_RS01850 +0.1 1.1 phosphate ABC transporter substrate-binding protein compare
MMP_RS06540 +0.1 0.4 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS00800 +0.1 1.0 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06050 +0.1 1.0 ZIP family metal transporter compare
MMP_RS00705 +0.1 0.4 hypothetical protein compare
MMP_RS06660 +0.1 0.9 glycosyltransferase family 4 protein compare
MMP_RS06005 +0.1 0.8 heavy-metal-associated domain-containing protein compare
MMP_RS00665 +0.1 1.0 hypothetical protein compare
MMP_RS00125 +0.1 0.4 DUF2798 domain-containing protein compare
MMP_RS03585 +0.1 0.6 Hsp20/alpha crystallin family protein compare
MMP_RS04735 +0.1 0.8 tautomerase family protein compare
MMP_RS04985 +0.1 0.6 DUF2180 family protein compare
MMP_RS02845 +0.1 1.0 hypothetical protein compare
MMP_RS01435 +0.1 1.0 DMT family transporter compare
MMP_RS08235 +0.1 0.9 hypothetical protein compare
MMP_RS08225 +0.1 1.0 RimK family alpha-L-glutamate ligase compare
MMP_RS02765 +0.1 1.0 ABC transporter ATP-binding protein compare
MMP_RS04490 +0.1 0.9 CBS domain-containing protein compare
MMP_RS09065 +0.1 1.0 hypothetical protein compare
MMP_RS02380 +0.1 0.8 ATP-binding protein compare
MMP_RS03150 +0.1 1.0 phosphoglycerate mutase compare
MMP_RS00640 +0.1 1.0 ABC transporter substrate-binding protein compare
MMP_RS06375 +0.1 0.8 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS02770 +0.1 1.0 hypothetical protein compare
MMP_RS05365 +0.1 0.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community Ethanol across organisms