Experiment set1IT054 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS02035 -6.4 -4.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS04485 -6.3 -4.3 riboflavin synthase compare
MMJJ_RS07665 -5.6 -29.7 formate dehydrogenase subunit alpha compare
MMJJ_RS07670 -5.3 -20.0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS04200 -4.8 -3.3 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS04475 -4.8 -5.6 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS00580 -4.7 -2.0 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS05190 -4.6 -10.6 gamma carbonic anhydrase family protein compare
MMJJ_RS01810 -4.6 -2.1 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS08005 -4.6 -21.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS05575 -4.6 -3.1 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS08080 -4.6 -6.9 TIGR00300 family protein compare
MMJJ_RS07380 -4.5 -6.1 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS00645 -4.4 -9.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS00275 -4.4 -2.5 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS00450 -4.3 -2.2 DUF126 domain-containing protein compare
MMJJ_RS03620 -4.3 -3.0 DUF2097 domain-containing protein compare
MMJJ_RS06270 -4.3 -7.1 dethiobiotin synthase compare
MMJJ_RS02920 -4.2 -2.2 30S ribosomal protein S27ae compare
MMJJ_RS06725 -4.2 -12.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06860 -4.2 -5.0 hypothetical protein compare
MMJJ_RS07660 -4.2 -9.4 carbonic anhydrase compare
MMJJ_RS00065 -4.2 -15.9 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS06240 -4.1 -2.6 dihydropteroate synthase-like protein compare
MMJJ_RS07980 -4.1 -13.3 biotin synthase BioB compare
MMJJ_RS07655 -4.1 -13.8 hypothetical protein compare
MMJJ_RS03895 -4.1 -3.8 hydrogenase expression/formation protein HypE compare
MMJJ_RS05445 -4.0 -2.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS03125 -4.0 -3.8 GMC oxidoreductase compare
MMJJ_RS00370 -4.0 -2.0 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS05065 -4.0 -4.4 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS08020 -4.0 -8.5 nucleotidyltransferase domain-containing protein compare
MMJJ_RS07720 -3.9 -1.9 UPF0058 family protein compare
MMJJ_RS01750 -3.9 -2.4 ferrous iron transport protein A compare
MMJJ_RS06510 -3.9 -3.4 LL-diaminopimelate aminotransferase compare
MMJJ_RS06260 -3.9 -9.8 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS00045 -3.8 -18.2 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS05195 -3.8 -6.9 hypothetical protein compare
MMJJ_RS06490 -3.8 -2.6 methanogenesis marker 2 protein compare
MMJJ_RS00050 -3.8 -10.0 AAA family ATPase compare
MMJJ_RS01935 -3.8 -3.6 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS08500 -3.7 -8.5 L-sulfolactate dehydrogenase compare
MMJJ_RS02045 -3.7 -3.2 molybdenum cofactor guanylyltransferase compare
MMJJ_RS00040 -3.7 -10.4 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS08625 -3.7 -5.0 magnesium/cobalt transporter CorA compare
MMJJ_RS00070 -3.7 -4.6 CooT family nickel-binding protein compare
MMJJ_RS00055 -3.7 -10.4 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS06150 -3.7 -5.9 DUF483 domain-containing protein compare
MMJJ_RS07640 -3.7 -24.4 cache domain-containing protein compare
MMJJ_RS08840 -3.6 -3.5 calcium/sodium antiporter compare
MMJJ_RS03865 -3.6 -1.5 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS06875 -3.6 -2.1 hypothetical protein compare
MMJJ_RS00060 -3.6 -19.8 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS03200 -3.6 -2.0 uroporphyrinogen-III synthase compare
MMJJ_RS00475 -3.6 -1.8 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS07245 -3.6 -6.3 amidohydrolase family protein compare
MMJJ_RS03270 -3.6 -1.8 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS00075 -3.6 -15.1 AAA family ATPase compare
MMJJ_RS09375 -3.6 -1.5 hypothetical protein compare
MMJJ_RS04685 -3.5 -7.7 carbamoyltransferase HypF compare
MMJJ_RS08870 -3.5 -1.2 2-isopropylmalate synthase compare
MMJJ_RS03230 -3.5 -5.2 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS07635 -3.5 -14.7 response regulator transcription factor compare
MMJJ_RS06915 -3.5 -16.8 helix-turn-helix domain-containing protein compare
MMJJ_RS00520 -3.4 -8.3 PDGLE domain-containing protein compare
MMJJ_RS00035 -3.4 -16.7 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS06265 -3.4 -15.8 8-amino-7-oxononanoate synthase compare
MMJJ_RS08330 -3.4 -3.1 SufD family Fe-S cluster assembly protein compare
MMJJ_RS06855 -3.3 -2.0 DUF2104 domain-containing protein compare
MMJJ_RS08065 -3.3 -3.2 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS08925 -3.3 -14.8 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS04050 -3.3 -2.0 dihydroneopterin aldolase family protein compare
MMJJ_RS07650 -3.3 -22.3 formate/nitrite transporter family protein compare
MMJJ_RS06180 -3.3 -2.2 tryptophan--tRNA ligase compare
MMJJ_RS03580 -3.2 -3.6 TIGR00303 family protein compare
MMJJ_RS03670 -3.2 -3.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS03060 -3.2 -3.7 methanogenesis marker 7 protein compare
MMJJ_RS05260 -3.2 -5.2 ATP-grasp domain-containing protein compare
MMJJ_RS03875 -3.2 -3.7 CBS domain-containing protein compare
MMJJ_RS00080 -3.2 -15.0 DUF166 domain-containing protein compare
MMJJ_RS07425 -3.2 -10.4 MBL fold metallo-hydrolase compare
MMJJ_RS04800 -3.1 -5.8 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS01600 -3.1 -2.1 radical SAM protein compare
MMJJ_RS00125 -3.1 -2.9 KEOPS complex subunit Cgi121 compare
MMJJ_RS06010 -3.1 -7.2 hypothetical protein compare
MMJJ_RS04980 -3.1 -4.6 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS06040 -3.1 -3.5 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS02200 -3.1 -9.9 chorismate pyruvate-lyase family protein compare
MMJJ_RS06625 -3.1 -1.6 pyruvate synthase subunit PorB compare
MMJJ_RS00270 -3.1 -2.1 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS07785 -3.1 -2.0 fumarate reductase subunit A compare
MMJJ_RS03150 -3.0 -6.2 2-phospho-L-lactate transferase compare
MMJJ_RS00560 -3.0 -3.5 homoisocitrate dehydrogenase compare
MMJJ_RS08175 -3.0 -9.1 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS08170 -3.0 -3.0 diaminopimelate decarboxylase compare
MMJJ_RS06930 -3.0 -3.3 type II methionyl aminopeptidase compare
MMJJ_RS00515 -3.0 -15.2 cobalt transporter CbiM compare
MMJJ_RS03760 -3.0 -2.8 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06050 -3.0 -14.6 molybdopterin molybdotransferase MoeA compare
MMJJ_RS06375 -3.0 -4.4 UbiX family flavin prenyltransferase compare
MMJJ_RS05935 -3.0 -2.3 Era-like GTP-binding protein compare
MMJJ_RS03005 -3.0 -3.4 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS07165 -3.0 -17.0 chromosome segregation protein SMC compare
MMJJ_RS06110 -2.9 -1.8 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS03190 -2.9 -2.0 phosphopyruvate hydratase compare
MMJJ_RS05490 -2.9 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS03660 -2.9 -3.3 DUF447 family protein compare
MMJJ_RS00530 -2.9 -15.2 cobalt ECF transporter T component CbiQ compare
MMJJ_RS07950 -2.9 -3.2 4Fe-4S binding protein compare
MMJJ_RS01360 -2.9 -1.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS05950 -2.9 -3.8 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS06020 -2.9 -7.8 hypothetical protein compare
MMJJ_RS05720 -2.8 -1.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS00205 -2.8 -5.6 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS08095 -2.8 -4.5 cobyric acid synthase CobQ compare
MMJJ_RS03110 -2.8 -4.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS02190 -2.8 -16.7 molybdopterin biosynthesis protein compare
MMJJ_RS05930 -2.8 -1.6 cell division protein SepF compare
MMJJ_RS06485 -2.8 -3.0 phosphoglycerate kinase compare
MMJJ_RS07190 -2.8 -2.6 RtcB family protein compare
MMJJ_RS03055 -2.8 -2.9 hypothetical protein compare
MMJJ_RS04995 -2.8 -5.6 Tfx family DNA-binding protein compare
MMJJ_RS03240 -2.8 -3.4 histone family protein compare
MMJJ_RS05070 -2.7 -2.0 DNA primase catalytic subunit PriS compare
MMJJ_RS08155 -2.7 -4.4 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS08535 -2.7 -3.9 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS00570 -2.7 -1.5 ribonuclease P compare
MMJJ_RS01830 -2.7 -4.5 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS08850 -2.7 -2.2 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS06695 -2.7 -2.5 amidohydrolase compare
MMJJ_RS08855 -2.7 -5.2 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS08320 -2.7 -2.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS00215 -2.7 -1.6 CCA tRNA nucleotidyltransferase compare
MMJJ_RS05415 -2.7 -1.5 hypothetical protein compare
MMJJ_RS00210 -2.7 -1.5 DUF530 family protein compare
MMJJ_RS07410 -2.6 -3.8 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS07995 -2.6 -8.0 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS02055 -2.6 -12.8 GTP 3',8-cyclase MoaA compare
MMJJ_RS06730 -2.6 -7.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS01690 -2.6 -2.5 methanogenesis marker 12 protein compare
MMJJ_RS04155 -2.6 -6.6 hypothetical protein compare
MMJJ_RS07155 -2.6 -11.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS02090 -2.6 -5.0 tyramine--L-glutamate ligase compare
MMJJ_RS06840 -2.6 -2.5 nickel-dependent hydrogenase large subunit compare
MMJJ_RS01820 -2.6 -5.7 MJ1244 family protein compare
MMJJ_RS05330 -2.5 -1.7 DNA polymerase II large subunit compare
MMJJ_RS07170 -2.5 -3.4 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS04790 -2.5 -4.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS04520 -2.5 -5.6 coenzyme F430 synthase compare
MMJJ_RS06715 -2.5 -10.1 lactaldehyde dehydrogenase compare
MMJJ_RS06250 -2.5 -1.7 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS06155 -2.5 -6.1 phosphatidylglycerophosphatase A compare
MMJJ_RS09175 -2.5 -0.9 anthranilate synthase component I compare
MMJJ_RS05595 -2.5 -4.2 hypothetical protein compare
MMJJ_RS01200 -2.5 -1.7 PRC-barrel domain-containing protein compare
MMJJ_RS08000 -2.5 -11.4 HesA/MoeB/ThiF family protein compare
MMJJ_RS04150 -2.5 -3.0 DUF5379 domain-containing protein compare
MMJJ_RS06565 -2.4 -7.3 segregation/condensation protein A compare
MMJJ_RS04145 -2.4 -9.1 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS09190 -2.4 -1.7 tryptophan synthase subunit beta compare
MMJJ_RS03965 -2.4 -1.9 DNA-directed RNA polymerase subunit L compare
MMJJ_RS06910 -2.4 -2.0 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS01415 -2.4 -2.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS08055 -2.4 -6.6 methanogenesis marker 14 protein compare
MMJJ_RS08430 -2.4 -5.4 small nuclear ribonucleoprotein compare
MMJJ_RS08340 -2.4 -4.9 archaeoflavoprotein AfpA compare
MMJJ_RS08810 -2.4 -1.3 DUF4040 domain-containing protein compare
MMJJ_RS04650 -2.4 -5.5 nitrogenase iron protein compare
MMJJ_RS00345 -2.3 -10.5 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS06015 -2.3 -9.3 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS04565 -2.3 -4.2 sirohydrochlorin nickelochelatase compare
MMJJ_RS06750 -2.3 -1.3 homoaconitase large subunit compare
MMJJ_RS05620 -2.3 -2.7 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS04615 -2.3 -5.6 methanogenesis marker 3 protein compare
MMJJ_RS05590 -2.3 -1.1 homoserine dehydrogenase compare
MMJJ_RS06655 -2.3 -10.2 transcriptional regulator compare
MMJJ_RS01960 -2.3 -6.6 glycosyltransferase family 2 protein compare
MMJJ_RS05995 -2.3 -2.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS07160 -2.3 -15.6 M20 family metallo-hydrolase compare
MMJJ_RS06705 -2.3 -3.6 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS07275 -2.2 -2.1 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS01755 -2.2 -1.5 ferrous iron transport protein B compare
MMJJ_RS01870 -2.2 -1.2 methanogenesis marker 15 protein compare
MMJJ_RS04985 -2.2 -3.2 glutamyl-tRNA reductase compare
MMJJ_RS08035 -2.2 -7.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS06760 -2.2 -4.0 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS06220 -2.2 -5.0 polyamine aminopropyltransferase compare
MMJJ_RS05650 -2.2 -1.5 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS06390 -2.2 -1.8 NADPH-dependent F420 reductase compare
MMJJ_RS03615 -2.1 -2.3 cobalt-precorrin-8 methylmutase compare
MMJJ_RS00425 -2.1 -3.9 hypothetical protein compare
MMJJ_RS06805 -2.1 -2.8 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS00355 -2.1 -2.6 ribonuclease P protein component 4 compare
MMJJ_RS07725 -2.1 -6.9 DNA primase DnaG compare
MMJJ_RS05810 -2.1 -5.1 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS04970 -2.1 -1.6 DUF655 domain-containing protein compare
MMJJ_RS03840 -2.1 -1.4 DHH family phosphoesterase compare
MMJJ_RS03800 -2.1 -8.6 aldolase compare
MMJJ_RS03095 -2.1 -2.0 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS06005 -2.1 -6.8 energy conserving hydrogenase EhbF compare


Specific Phenotypes

For 3 genes in this experiment

For nutrient t2 Sodium acetate in Methanococcus maripaludis JJ

For nutrient t2 Sodium acetate across organisms