Experiment set1IT053 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
AO353_13070 -4.6 -7.7 phosphoserine phosphatase compare
AO353_12115 -4.5 -3.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12090 -4.5 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12070 -4.4 -9.0 imidazoleglycerol-phosphate dehydratase compare
AO353_20635 -4.3 -13.4 3-isopropylmalate dehydrogenase compare
AO353_07210 -4.2 -5.8 indole-3-glycerol-phosphate synthase compare
AO353_20695 -4.2 -7.5 O-succinylhomoserine sulfhydrylase compare
AO353_14505 -4.2 -12.9 ketol-acid reductoisomerase compare
AO353_12520 -4.1 -13.0 glutamate synthase compare
AO353_12365 -4.1 -4.9 phosphoribosyl-AMP cyclohydrolase compare
AO353_07220 -4.1 -8.7 anthranilate synthase compare
AO353_20665 -4.1 -11.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_08345 -4.1 -9.1 dihydroxy-acid dehydratase compare
AO353_03360 -4.0 -9.7 glucose-6-phosphate dehydrogenase compare
AO353_02070 -4.0 -7.7 prephenate dehydratase compare
AO353_08185 -4.0 -11.3 methionine biosynthesis protein MetW compare
AO353_07230 -4.0 -18.0 anthranilate synthase compare
AO353_12515 -4.0 -22.7 glutamate synthase compare
AO353_02075 -4.0 -11.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_05115 -4.0 -11.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12075 -3.9 -8.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_12085 -3.8 -9.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_22800 -3.8 -5.2 sulfite reductase compare
AO353_05110 -3.8 -12.4 histidinol dehydrogenase compare
AO353_09240 -3.7 -4.4 acetylglutamate kinase compare
AO353_13165 -3.6 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_08180 -3.6 -14.7 homoserine O-acetyltransferase compare
AO353_08475 -3.6 -10.4 phosphoserine phosphatase compare
AO353_20625 -3.6 -5.5 3-isopropylmalate dehydratase compare
AO353_20620 -3.6 -8.4 isopropylmalate isomerase compare
AO353_10670 -3.5 -9.5 shikimate dehydrogenase compare
AO353_10710 -3.4 -6.6 tryptophan synthase subunit beta compare
AO353_00310 -3.4 -12.0 transaldolase compare
AO353_08685 -3.4 -10.3 N-acetylglutamate synthase compare
AO353_14495 -3.4 -13.5 acetolactate synthase 3 catalytic subunit compare
AO353_07215 -3.4 -9.4 anthranilate phosphoribosyltransferase compare
AO353_08510 -3.3 -6.6 3-phosphoglycerate dehydrogenase compare
AO353_14500 -3.2 -8.6 acetolactate synthase 3 regulatory subunit compare
AO353_20540 -3.1 -9.2 aromatic amino acid aminotransferase compare
AO353_04105 -3.1 -10.9 argininosuccinate synthase compare
AO353_08165 -3.1 -3.0 pyrroline-5-carboxylate reductase compare
AO353_14400 -3.0 -5.4 Fis family transcriptional regulator compare
AO353_10025 -3.0 -16.4 pyruvate carboxylase subunit B compare
AO353_04155 -3.0 -13.8 ornithine carbamoyltransferase compare
AO353_09000 -3.0 -7.6 argininosuccinate lyase compare
AO353_07155 -2.9 -9.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12360 -2.9 -10.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_10035 -2.9 -10.8 LysR family transcriptional regulator compare
AO353_02685 -2.9 -4.8 phosphoribosylglycinamide formyltransferase compare
AO353_12500 -2.9 -2.8 shikimate kinase compare
AO353_16940 -2.9 -7.8 deoxycytidine triphosphate deaminase compare
AO353_08015 -2.9 -9.0 5,10-methylenetetrahydrofolate reductase compare
AO353_10030 -2.8 -12.5 pyruvate carboxylase subunit A compare
AO353_00825 -2.6 -5.1 porin compare
AO353_15925 -2.5 -10.5 2-isopropylmalate synthase compare
AO353_14595 -2.5 -10.9 carbonate dehydratase compare
AO353_06495 -2.4 -6.7 gamma-glutamyl phosphate reductase compare
AO353_19060 -2.4 -6.3 CysB family transcriptional regulator compare
AO353_02250 -2.4 -4.4 chorismate synthase compare
AO353_07515 -2.4 -2.8 transporter compare
AO353_07525 -2.3 -13.5 biotin synthase compare
AO353_14115 -2.3 -7.6 gamma-glutamyl kinase compare
AO353_13140 -2.3 -7.4 tRNA dimethylallyltransferase compare
AO353_14370 -2.3 -7.7 glucose-6-phosphate isomerase compare
AO353_12145 -2.3 -5.6 nitrogen regulation protein NR(I) compare
AO353_03020 -2.2 -8.1 arginine N-succinyltransferase compare
AO353_09285 -2.1 -9.2 reactive intermediate/imine deaminase compare
AO353_20175 -2.1 -4.4 ATP-dependent Clp protease proteolytic subunit compare
AO353_05105 -2.1 -10.6 histidinol-phosphate aminotransferase compare
AO353_07520 -2.0 -12.3 8-amino-7-oxononanoate synthase compare
AO353_03420 -2.0 -5.8 phosphogluconate dehydratase compare
AO353_08045 -2.0 -12.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_14775 -1.9 -7.5 hypothetical protein compare
AO353_06045 -1.9 -8.3 exodeoxyribonuclease V subunit beta compare
AO353_06320 -1.9 -5.1 AsnC family transcriptional regulator compare
AO353_07355 -1.9 -6.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_01795 -1.8 -3.3 hypothetical protein compare
AO353_13640 -1.7 -4.6 histidine kinase compare
AO353_04355 -1.7 -2.6 homoserine dehydrogenase compare
AO353_21625 -1.7 -2.7 Fe/S biogenesis protein NfuA compare
AO353_05625 -1.6 -2.2 transcription elongation factor GreA compare
AO353_06040 -1.6 -4.2 exodeoxyribonuclease V subunit alpha compare
AO353_03425 -1.6 -8.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12510 -1.6 -9.2 cell division protein compare
AO353_09890 -1.6 -5.4 phosphate ABC transporter ATP-binding protein compare
AO353_13160 -1.6 -2.9 membrane protease HflC compare
AO353_07505 -1.5 -7.3 dethiobiotin synthetase compare
AO353_10445 -1.5 -2.5 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_27650 -1.5 -4.7 cell division protein FtsK compare
AO353_03795 -1.5 -4.9 fumarate hydratase compare
AO353_07510 -1.5 -8.5 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_10510 -1.5 -2.4 benzoate transporter compare
AO353_10455 -1.5 -2.3 tRNA modification GTPase MnmE compare
AO353_14420 -1.4 -4.3 molecular chaperone DnaK compare
AO353_11165 -1.4 -7.9 hypothetical protein compare
AO353_10705 -1.4 -3.0 tryptophan synthase subunit alpha compare
AO353_11730 -1.4 -8.2 glutamate--cysteine ligase compare
AO353_03585 -1.4 -3.1 ATP-dependent DNA helicase RuvA compare
AO353_05420 -1.4 -1.8 peptide chain release factor 3 compare
AO353_07315 -1.4 -2.5 rRNA methyltransferase compare
AO353_13225 -1.3 -3.5 50S ribosomal protein L9 compare
AO353_11850 -1.3 -3.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_18540 -1.3 -3.0 pseudouridine synthase compare
AO353_23410 -1.3 -1.7 hypothetical protein compare
AO353_01375 -1.3 -5.5 phosphate acyltransferase compare
AO353_16450 -1.3 -9.1 protein-PII uridylyltransferase compare
AO353_00515 -1.3 -3.2 hypothetical protein compare
AO353_03415 -1.3 -4.6 glucokinase compare
AO353_03015 -1.3 -4.2 arginine N-succinyltransferase compare
AO353_03245 -1.3 -6.4 permease DsdX compare
AO353_02970 -1.3 -3.2 carbon storage regulator compare
AO353_03715 -1.3 -2.7 H-NS histone compare
AO353_16805 -1.2 -5.3 recombinase RecA compare
AO353_02060 -1.2 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_02710 -1.2 -8.2 (p)ppGpp synthetase compare
AO353_13665 -1.2 -5.0 hypothetical protein compare
AO353_21640 -1.2 -2.5 cobalt transporter compare
AO353_12650 -1.2 -1.6 hypothetical protein compare
AO353_15185 -1.2 -4.6 ATPase compare
AO353_04175 -1.2 -4.3 glycerol uptake facilitator GlpF compare
AO353_16440 -1.2 -2.4 ArsC family transcriptional regulator compare
AO353_10040 -1.2 -6.8 transcriptional regulator compare
AO353_03615 -1.2 -3.0 cold-shock protein compare
AO353_09720 -1.2 -1.0 hypothetical protein compare
AO353_04220 -1.2 -4.4 chemotaxis protein CheY compare
AO353_23495 -1.2 -1.8 SAM-dependent methyltransferase compare
AO353_07445 -1.2 -2.1 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_07075 -1.2 -4.4 elongation factor Tu compare
AO353_03590 -1.2 -3.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_05075 -1.1 -7.2 adenylylsulfate kinase compare
AO353_03430 -1.1 -2.2 methylglyoxal synthase compare
AO353_10435 -1.1 -6.7 chromosome partitioning protein compare
AO353_08885 -1.1 -8.7 polyphosphate kinase compare
AO353_05080 -1.1 -7.2 sulfate adenylyltransferase compare
AO353_26080 -1.1 -2.4 hypothetical protein compare
AO353_27995 -1.1 -4.2 RpiR family transcriptional regulator compare
AO353_06050 -1.1 -5.1 exodeoxyribonuclease V subunit gamma compare
AO353_15445 -1.1 -2.9 disulfide bond formation protein B compare
AO353_03775 -1.1 -5.7 pyruvate kinase compare
AO353_08780 -1.1 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_17035 -1.0 -3.5 hypothetical protein compare
AO353_09905 -1.0 -6.0 phosphate-binding protein compare
AO353_02720 -1.0 -4.1 cysteine synthase compare
AO353_02810 -1.0 -5.6 histidine kinase compare
AO353_12105 -1.0 -4.7 peptidase S41 compare
AO353_03250 -1.0 -1.6 gluconokinase compare
AO353_04240 -1.0 -2.0 chemotaxis protein CheW compare
AO353_02975 -1.0 -2.0 aspartate kinase compare
AO353_08265 -1.0 -4.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_07645 -1.0 -1.5 sarcosine oxidase subunit gamma compare
AO353_08350 -1.0 -5.1 hypothetical protein compare
AO353_08880 -0.9 -2.1 exopolyphosphatase compare
AO353_09915 -0.9 -4.0 long-chain acyl-CoA thioester hydrolase compare
AO353_20185 -0.9 -4.1 DNA-binding protein compare
AO353_13605 -0.9 -5.5 oxidoreductase compare
AO353_11530 -0.9 -5.7 diguanylate cyclase compare
AO353_04565 -0.9 -3.8 nucleoid-associated protein compare
AO353_03580 -0.9 -2.7 ATP-dependent DNA helicase RuvB compare
AO353_12150 -0.9 -3.4 histidine kinase compare
AO353_12345 -0.9 -1.5 twin-arginine protein translocation system subunit TatC compare
AO353_24260 -0.9 -1.7 hypothetical protein compare
AO353_21615 -0.9 -5.8 methionine synthase compare
AO353_23220 -0.9 -1.8 hypothetical protein compare
AO353_10320 -0.9 -1.5 hypothetical protein compare
AO353_13200 -0.9 -6.2 exoribonuclease R compare
AO353_13245 -0.9 -4.8 hypothetical protein compare
AO353_02220 -0.9 -1.6 hypothetical protein compare
AO353_03630 -0.9 -6.5 porin compare
AO353_14990 -0.9 -1.3 hypothetical protein compare
AO353_13610 -0.9 -2.5 precorrin isomerase compare
AO353_12420 -0.9 -2.5 predicted FeS cluster maintenance protein (from data) compare
AO353_05140 -0.9 -5.1 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_02280 -0.9 -1.6 DNA mismatch repair protein MutS compare
AO353_16195 -0.8 -1.7 DNA mismatch repair protein MutT compare
AO353_16210 -0.8 -5.9 XRE family transcriptional regulator compare
AO353_27000 -0.8 -1.7 hypothetical protein compare
AO353_08600 -0.8 -2.5 TetR family transcriptional regulator compare
AO353_01685 -0.8 -1.6 hypothetical protein compare
AO353_14405 -0.8 -5.3 ATPase compare
AO353_25640 -0.8 -2.1 AsnC family transcriptional regulator compare
AO353_02610 -0.8 -4.2 adenosylcobinamide kinase compare
AO353_05145 -0.8 -3.7 ABC transporter permease compare
AO353_04500 -0.8 -1.7 DNA repair protein RecO compare
AO353_17540 -0.8 -2.4 helicase compare
AO353_14395 -0.8 -2.8 poly(A) polymerase compare
AO353_00750 -0.8 -2.7 GntR family transcriptional regulator compare
AO353_05690 -0.8 -2.2 SsrA-binding protein compare
AO353_18745 -0.8 -2.0 flagellar biosynthesis protein flip compare
AO353_00835 -0.8 -3.9 transporter compare
AO353_27855 -0.8 -1.8 MarR family transcriptional regulator compare
AO353_17750 -0.8 -2.1 transcriptional regulator compare
AO353_21540 -0.7 -2.0 type VI secretion protein compare
AO353_00490 -0.7 -2.0 PasA protein compare
AO353_20170 -0.7 -2.9 trigger factor compare
AO353_09860 -0.7 -4.9 histidine kinase compare
AO353_10615 -0.7 -2.6 pilus assembly protein PilZ compare
AO353_09405 -0.7 -2.7 type VI secretion protein compare
AO353_13460 -0.7 -1.8 phosphate starvation-inducible protein PsiF compare
AO353_10055 -0.7 -5.0 DNA helicase II compare
AO353_18410 -0.7 -2.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in carbon source experiments

For carbon source D-Glucose across organisms